Wall clock time and date at job start Mon Mar 30 2020 05:43:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46626 * 2 1 4 4 H 1.08992 * 109.47046 * 304.99570 * 3 2 1 5 5 C 1.52999 * 109.46811 * 184.99727 * 3 2 1 6 6 C 1.53000 * 117.49815 * 128.74694 * 5 3 2 7 7 C 1.52997 * 117.49913 * 60.08519 * 5 3 2 8 8 N 1.46496 * 109.47070 * 64.99833 * 3 2 1 9 9 C 1.46502 * 120.00077 * 60.00130 * 8 3 2 10 10 C 1.34776 * 119.99814 * 239.99784 * 8 3 2 11 11 O 1.21285 * 120.00360 * 359.97438 * 10 8 3 12 12 C 1.50706 * 120.00051 * 180.02562 * 10 8 3 13 13 H 1.09007 * 109.46603 * 319.99803 * 12 10 8 14 14 N 1.46900 * 109.47264 * 200.00250 * 12 10 8 15 15 C 1.52999 * 109.47090 * 79.99647 * 12 10 8 16 16 C 1.53008 * 109.46878 * 185.00163 * 15 12 10 17 17 C 1.50696 * 109.47204 * 180.02562 * 16 15 12 18 18 H 1.08009 * 119.99660 * 359.97438 * 17 16 15 19 19 C 1.37871 * 120.00172 * 179.97438 * 17 16 15 20 20 N 1.31514 * 120.00234 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 120.00038 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47223 * 60.00099 * 21 19 17 23 23 H 1.48498 * 109.47030 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.47193 * 300.00026 * 21 19 17 25 25 H 1.08993 * 109.47839 * 299.99931 * 1 2 3 26 26 H 1.09000 * 109.47160 * 60.00369 * 1 2 3 27 27 H 1.09002 * 109.46719 * 180.02562 * 1 2 3 28 28 H 1.08993 * 109.47839 * 240.00069 * 2 1 3 29 29 H 1.09000 * 109.47160 * 119.99631 * 2 1 3 30 30 H 1.08998 * 115.55143 * 274.41849 * 5 3 2 31 31 H 1.08999 * 117.49895 * 359.97438 * 6 5 3 32 32 H 1.09003 * 117.50125 * 145.01944 * 6 5 3 33 33 H 1.09006 * 117.50358 * 214.97668 * 7 5 3 34 34 H 1.08999 * 117.50336 * 0.02562 * 7 5 3 35 35 H 1.08998 * 109.47173 * 90.00000 * 9 8 3 36 36 H 1.09005 * 109.46843 * 209.99605 * 9 8 3 37 37 H 1.08998 * 109.46952 * 329.99336 * 9 8 3 38 38 H 1.00902 * 110.99403 * 299.99534 * 14 12 10 39 39 H 1.00894 * 111.00212 * 63.94357 * 14 12 10 40 40 H 1.08999 * 109.47371 * 304.99875 * 15 12 10 41 41 H 1.09002 * 109.47012 * 65.00576 * 15 12 10 42 42 H 1.08999 * 109.46885 * 300.00010 * 16 15 12 43 43 H 1.09001 * 109.47182 * 59.99879 * 16 15 12 44 44 H 0.96998 * 120.00333 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 3.5647 1.4445 -0.1257 6 6 4.1828 2.3251 -1.2135 7 6 4.1714 0.8030 -1.3751 8 7 1.6522 2.0975 1.2518 9 6 2.1137 1.5591 2.5337 10 6 0.8711 3.1955 1.2240 11 8 0.4894 3.6416 0.1627 12 6 0.4727 3.8696 2.5117 13 1 0.2454 3.1129 3.2627 14 7 -0.7149 4.7029 2.2812 15 6 1.6243 4.7480 3.0049 16 6 1.2690 5.3337 4.3731 17 6 2.4029 6.1994 4.8587 18 1 3.2886 6.3194 4.2523 19 6 2.3097 6.8382 6.0770 20 7 1.2314 6.6916 6.8155 21 14 3.7156 7.9107 6.6792 22 1 3.9458 9.0140 5.7124 23 1 3.3707 8.4792 8.0070 24 1 4.9481 7.0908 6.7974 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 4.1137 1.3409 0.8103 31 1 3.5031 2.9028 -1.8399 32 1 5.1386 2.8007 -0.9933 33 1 5.1197 0.2777 -1.2614 34 1 3.4842 0.3799 -2.1079 35 1 3.0650 2.0197 2.7999 36 1 1.3759 1.7768 3.3060 37 1 2.2434 0.4801 2.4490 38 1 -0.5296 5.4126 1.5883 39 1 -1.5075 4.1375 2.0165 40 1 2.5291 4.1463 3.0912 41 1 1.7929 5.5582 2.2955 42 1 0.3642 5.9354 4.2868 43 1 1.1003 4.5236 5.0825 44 1 1.1657 7.1413 7.6725 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691609968.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:43:45 Heat of formation + Delta-G solvation = -28.088452 kcal Electronic energy + Delta-G solvation = -21441.323442 eV Core-core repulsion = 18393.808939 eV Total energy + Delta-G solvation = -3047.514503 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.28783 -38.02410 -35.35793 -35.21365 -32.90350 -32.64244 -30.06909 -27.85837 -26.81234 -25.83596 -23.57810 -22.71257 -21.90369 -20.60156 -19.88432 -18.92864 -17.34364 -16.55952 -16.20291 -15.53978 -15.28628 -15.15606 -14.49802 -14.35192 -14.12270 -13.54720 -13.41355 -13.05021 -12.86973 -12.57324 -12.28390 -12.19620 -11.91141 -11.73236 -11.62660 -11.46249 -11.26549 -10.91288 -10.86198 -10.63954 -10.57468 -10.51948 -10.11745 -10.00221 -9.74506 -9.33800 -8.99394 -8.56985 -8.31793 -8.16650 -5.92495 -3.94598 2.80139 3.05288 3.36646 3.41256 3.43723 3.66859 4.39271 4.50846 4.69985 4.81716 4.84254 4.93035 4.99505 5.04590 5.06439 5.19600 5.31410 5.38057 5.43100 5.45281 5.60491 5.64859 5.71498 5.77229 5.79452 5.83820 5.86674 5.92123 5.97313 6.08088 6.16789 6.47379 6.59612 6.71427 7.10689 7.38333 7.56689 7.77141 7.82677 7.97781 8.14852 8.34024 8.50133 9.13165 9.68448 11.18381 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.022251 B = 0.004457 C = 0.004055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.073272 B = 6280.380830 C = 6903.879059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.130 4.130 3 C 0.167 3.833 4 H 0.098 0.902 5 C -0.163 4.163 6 C -0.175 4.175 7 C -0.174 4.174 8 N -0.604 5.604 9 C 0.072 3.928 10 C 0.486 3.514 11 O -0.556 6.556 12 C 0.078 3.922 13 H 0.098 0.902 14 N -0.808 5.808 15 C -0.094 4.094 16 C 0.033 3.967 17 C -0.522 4.522 18 H 0.051 0.949 19 C 0.059 3.941 20 N -0.893 5.893 21 Si 0.888 3.112 22 H -0.278 1.278 23 H -0.288 1.288 24 H -0.278 1.278 25 H 0.054 0.946 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.072 0.928 29 H 0.067 0.933 30 H 0.107 0.893 31 H 0.094 0.906 32 H 0.094 0.906 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.062 0.938 36 H 0.079 0.921 37 H 0.069 0.931 38 H 0.347 0.653 39 H 0.333 0.667 40 H 0.054 0.946 41 H 0.051 0.949 42 H 0.034 0.966 43 H 0.012 0.988 44 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.949 -15.464 -13.421 20.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.168 4.168 3 C 0.063 3.937 4 H 0.116 0.884 5 C -0.183 4.183 6 C -0.212 4.212 7 C -0.212 4.212 8 N -0.337 5.337 9 C -0.071 4.071 10 C 0.274 3.726 11 O -0.434 6.434 12 C -0.038 4.038 13 H 0.116 0.884 14 N -0.335 5.335 15 C -0.132 4.132 16 C -0.005 4.005 17 C -0.560 4.560 18 H 0.069 0.931 19 C -0.142 4.142 20 N -0.532 5.532 21 Si 0.716 3.284 22 H -0.203 1.203 23 H -0.213 1.213 24 H -0.204 1.204 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.090 0.910 29 H 0.086 0.914 30 H 0.125 0.875 31 H 0.113 0.887 32 H 0.112 0.888 33 H 0.112 0.888 34 H 0.112 0.888 35 H 0.080 0.920 36 H 0.098 0.902 37 H 0.088 0.912 38 H 0.161 0.839 39 H 0.144 0.856 40 H 0.072 0.928 41 H 0.070 0.930 42 H 0.053 0.947 43 H 0.030 0.970 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 1.715 -14.942 -13.016 19.890 hybrid contribution 1.001 0.167 -0.508 1.135 sum 2.716 -14.775 -13.524 20.213 Atomic orbital electron populations 1.21708 0.95443 1.01208 1.02217 1.21845 0.96350 0.96026 1.02555 1.20629 0.91439 0.93256 0.88368 0.88397 1.22627 0.95469 1.05680 0.94474 1.23017 1.02756 0.93107 1.02278 1.22931 1.02445 0.95923 0.99901 1.47923 1.50670 1.28492 1.06646 1.21897 1.01053 0.99201 0.84933 1.22713 0.77040 0.79339 0.93554 1.90616 1.55791 1.64157 1.32822 1.21882 0.94052 0.95944 0.91902 0.88438 1.59024 1.04674 1.16350 1.53482 1.21640 0.93420 0.97046 1.01141 1.19002 0.97367 0.95685 0.88404 1.21238 1.02747 1.28814 1.03248 0.93100 1.24976 0.95656 0.96709 0.96886 1.69961 1.27237 1.43669 1.12344 0.86726 0.82765 0.80948 0.77927 1.20332 1.21330 1.20391 0.92705 0.92812 0.92823 0.90969 0.91439 0.87450 0.88707 0.88788 0.88760 0.88799 0.91962 0.90199 0.91230 0.83901 0.85584 0.92770 0.93003 0.94731 0.96951 0.93058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 9.80 37.16 0.36 -1.12 16 2 C -0.13 -1.21 5.27 -26.73 -0.14 -1.35 16 3 C 0.17 1.94 2.26 -67.93 -0.15 1.79 16 4 H 0.10 1.37 6.66 -51.93 -0.35 1.02 16 5 C -0.16 -1.72 5.21 -90.62 -0.47 -2.20 16 6 C -0.17 -1.85 10.18 -26.69 -0.27 -2.12 16 7 C -0.17 -1.51 9.67 -26.69 -0.26 -1.77 16 8 N -0.60 -7.92 2.21 -173.93 -0.39 -8.31 16 9 C 0.07 0.81 8.54 59.85 0.51 1.32 16 10 C 0.49 7.86 6.92 -10.98 -0.08 7.79 16 11 O -0.56 -10.38 15.58 5.55 0.09 -10.29 16 12 C 0.08 1.33 2.42 -68.86 -0.17 1.16 16 13 H 0.10 1.58 6.31 -51.93 -0.33 1.25 16 14 N -0.81 -13.94 8.44 -5.65 -0.05 -13.99 16 15 C -0.09 -1.93 4.71 -26.73 -0.13 -2.05 16 16 C 0.03 0.83 4.86 -27.88 -0.14 0.70 16 17 C -0.52 -14.78 9.11 -34.44 -0.31 -15.09 16 18 H 0.05 1.41 7.74 -52.48 -0.41 1.00 16 19 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 20 N -0.89 -26.91 13.29 55.43 0.74 -26.18 16 21 Si 0.89 21.76 29.54 -169.99 -5.02 16.74 16 22 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 23 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 24 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 25 H 0.05 0.62 7.75 -51.93 -0.40 0.22 16 26 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 27 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.07 0.59 7.13 -51.93 -0.37 0.22 16 29 H 0.07 0.58 6.48 -51.93 -0.34 0.25 16 30 H 0.11 1.14 7.43 -51.93 -0.39 0.75 16 31 H 0.09 1.08 8.05 -51.93 -0.42 0.67 16 32 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 33 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.09 0.75 7.59 -51.93 -0.39 0.35 16 35 H 0.06 0.72 7.58 -51.93 -0.39 0.33 16 36 H 0.08 0.91 5.94 -51.93 -0.31 0.60 16 37 H 0.07 0.61 6.34 -51.93 -0.33 0.28 16 38 H 0.35 6.11 8.58 -39.29 -0.34 5.77 16 39 H 0.33 5.00 9.06 -39.29 -0.36 4.64 16 40 H 0.05 1.05 6.94 -51.93 -0.36 0.69 16 41 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 42 H 0.03 0.96 7.75 -51.93 -0.40 0.56 16 43 H 0.01 0.33 8.14 -51.93 -0.42 -0.10 16 44 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 349.28 15.07 5.26 5.26 Total: -1.00 -31.73 349.28 -8.25 -39.98 By element: Atomic # 1 Polarization: 15.68 SS G_CDS: -7.55 Total: 8.14 kcal Atomic # 6 Polarization: -10.02 SS G_CDS: -1.34 Total: -11.36 kcal Atomic # 7 Polarization: -48.78 SS G_CDS: 0.30 Total: -48.48 kcal Atomic # 8 Polarization: -10.38 SS G_CDS: 0.09 Total: -10.29 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -31.73 -8.25 -39.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691609968.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.895 kcal (2) G-P(sol) polarization free energy of solvation -31.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds