Wall clock time and date at job start Mon Mar 30 2020 04:48:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47127 * 2 1 4 4 C 1.52996 * 109.47131 * 179.97438 * 3 2 1 5 5 H 1.09007 * 109.46739 * 55.00050 * 4 3 2 6 6 N 1.46501 * 109.47377 * 295.00488 * 4 3 2 7 7 C 1.34774 * 119.99941 * 155.00075 * 6 4 3 8 8 O 1.21277 * 120.00419 * 359.97438 * 7 6 4 9 9 C 1.50700 * 119.99553 * 179.97438 * 7 6 4 10 10 H 1.08997 * 109.47439 * 319.99648 * 9 7 6 11 11 N 1.46902 * 109.46959 * 199.99439 * 9 7 6 12 12 C 1.53001 * 109.47122 * 80.00225 * 9 7 6 13 13 C 1.53004 * 109.47241 * 184.99861 * 12 9 7 14 14 C 1.50696 * 109.47126 * 179.97438 * 13 12 9 15 15 H 1.08005 * 120.00289 * 359.97438 * 14 13 12 16 16 C 1.37879 * 120.00097 * 180.02562 * 14 13 12 17 17 N 1.31516 * 120.00086 * 180.02562 * 16 14 13 18 18 Si 1.86809 * 119.99871 * 359.97438 * 16 14 13 19 19 H 1.48502 * 109.46840 * 90.00031 * 18 16 14 20 20 H 1.48494 * 109.46935 * 210.00409 * 18 16 14 21 21 H 1.48494 * 109.46865 * 330.00523 * 18 16 14 22 22 C 1.52992 * 109.47153 * 174.99932 * 4 3 2 23 23 C 1.53010 * 117.50287 * 248.74828 * 22 4 3 24 24 C 1.53001 * 117.49951 * 180.08951 * 22 4 3 25 25 H 1.09001 * 109.47002 * 299.99574 * 1 2 3 26 26 H 1.08993 * 109.46955 * 60.00011 * 1 2 3 27 27 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46801 * 120.00272 * 2 1 3 29 29 H 1.09001 * 109.46998 * 239.99868 * 2 1 3 30 30 H 1.08996 * 109.46952 * 300.00302 * 3 2 1 31 31 H 1.09001 * 109.46832 * 60.00321 * 3 2 1 32 32 H 0.96999 * 119.99400 * 334.99790 * 6 4 3 33 33 H 1.00897 * 111.00665 * 300.00269 * 11 9 7 34 34 H 1.00909 * 110.99701 * 63.96146 * 11 9 7 35 35 H 1.09008 * 109.47144 * 304.99421 * 12 9 7 36 36 H 1.08995 * 109.47621 * 64.99373 * 12 9 7 37 37 H 1.08998 * 109.46730 * 299.99821 * 13 12 9 38 38 H 1.08999 * 109.47000 * 59.99734 * 13 12 9 39 39 H 0.97006 * 119.99428 * 179.97438 * 17 16 14 40 40 H 1.09001 * 115.55376 * 34.42206 * 22 4 3 41 41 H 1.08997 * 117.49326 * 359.97438 * 23 22 4 42 42 H 1.08997 * 117.49679 * 145.02166 * 23 22 4 43 43 H 1.09010 * 117.50146 * 214.98267 * 24 22 4 44 44 H 1.09001 * 117.50161 * 359.97438 * 24 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9337 0.8529 -0.8410 6 7 4.0579 0.8588 1.2527 7 6 5.2798 0.2923 1.3009 8 8 5.9754 0.2653 0.3078 9 6 5.7818 -0.3075 2.5891 10 1 5.4934 0.3311 3.4240 11 7 7.2459 -0.4178 2.5400 12 6 5.1718 -1.6981 2.7759 13 6 5.5816 -2.2557 4.1405 14 6 4.9802 -3.6251 4.3248 15 1 4.3666 -4.0547 3.5467 16 6 5.2124 -4.3293 5.4872 17 7 4.6879 -5.5246 5.6478 18 14 6.2731 -3.5861 6.8335 19 1 5.4168 -2.8115 7.7673 20 1 6.9611 -4.6716 7.5774 21 1 7.2843 -2.6845 6.2257 22 6 4.0801 2.8794 -0.1251 23 6 4.7799 3.2692 -1.4287 24 6 5.5951 3.0921 -0.1452 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5139 0.8900 29 1 1.8934 -0.5139 -0.8900 30 1 1.6767 1.9563 -0.8899 31 1 1.6767 1.9562 0.8900 32 1 3.5014 0.8802 2.0469 33 1 7.5389 -1.0052 1.7738 34 1 7.6754 0.4935 2.4818 35 1 4.0852 -1.6283 2.7235 36 1 5.5315 -2.3614 1.9894 37 1 6.6681 -2.3256 4.1929 38 1 5.2218 -1.5924 4.9270 39 1 4.8516 -6.0202 6.4656 40 1 3.4718 3.6389 0.3661 41 1 4.8773 2.5018 -2.1965 42 1 4.6323 4.2852 -1.7948 43 1 5.9835 3.9917 0.3325 44 1 6.2285 2.2083 -0.0685 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691626921.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:48:47 Heat of formation + Delta-G solvation = -64.590325 kcal Electronic energy + Delta-G solvation = -21092.986658 eV Core-core repulsion = 18043.889315 eV Total energy + Delta-G solvation = -3049.097343 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.30971 -38.77690 -36.72506 -36.28175 -34.76477 -34.28629 -32.26851 -30.27588 -28.26614 -25.64578 -24.71317 -23.23268 -22.27053 -21.94578 -21.27941 -21.16955 -18.95729 -18.22993 -17.48677 -16.93574 -16.61510 -16.22202 -15.89224 -15.79373 -15.29909 -14.96666 -14.75735 -14.51610 -14.21793 -13.99965 -13.60823 -13.46762 -12.93512 -12.80192 -12.63256 -12.51835 -12.40430 -12.19388 -11.94320 -11.89642 -11.70923 -11.59908 -11.55950 -11.29482 -11.25895 -11.06103 -10.95615 -10.70032 -9.96455 -9.60731 -8.24428 -6.27579 1.40119 1.43905 1.57628 1.58417 2.17454 2.42243 2.99306 3.12293 3.52434 3.60136 3.87881 3.94055 4.05845 4.11146 4.14311 4.16526 4.26721 4.29745 4.37563 4.61693 4.72189 4.73359 4.78475 4.82466 4.86582 4.91058 5.02252 5.07377 5.15469 5.22479 5.28232 5.30844 5.35178 5.45718 5.50651 5.59710 5.66603 5.74789 6.10003 6.33228 6.49691 6.59629 6.81100 7.25103 7.37072 8.92502 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.019320 B = 0.004597 C = 0.003898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.948345 B = 6089.770095 C = 7181.250782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.129 4.129 3 C -0.111 4.111 4 C 0.172 3.828 5 H 0.060 0.940 6 N -0.707 5.707 7 C 0.490 3.510 8 O -0.575 6.575 9 C 0.084 3.916 10 H 0.117 0.883 11 N -0.819 5.819 12 C -0.077 4.077 13 C 0.003 3.997 14 C -0.531 4.531 15 H 0.027 0.973 16 C 0.003 3.997 17 N -0.955 5.955 18 Si 0.952 3.048 19 H -0.264 1.264 20 H -0.289 1.289 21 H -0.245 1.245 22 C -0.160 4.160 23 C -0.166 4.166 24 C -0.198 4.198 25 H 0.062 0.938 26 H 0.063 0.937 27 H 0.047 0.953 28 H 0.052 0.948 29 H 0.048 0.952 30 H 0.092 0.908 31 H 0.086 0.914 32 H 0.411 0.589 33 H 0.345 0.655 34 H 0.348 0.652 35 H 0.064 0.936 36 H 0.037 0.963 37 H 0.028 0.972 38 H 0.022 0.978 39 H 0.265 0.735 40 H 0.122 0.878 41 H 0.083 0.917 42 H 0.111 0.889 43 H 0.095 0.905 44 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.695 21.524 -10.823 24.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.167 4.167 3 C -0.149 4.149 4 C 0.067 3.933 5 H 0.078 0.922 6 N -0.359 5.359 7 C 0.276 3.724 8 O -0.456 6.456 9 C -0.032 4.032 10 H 0.135 0.865 11 N -0.348 5.348 12 C -0.116 4.116 13 C -0.035 4.035 14 C -0.569 4.569 15 H 0.046 0.954 16 C -0.193 4.193 17 N -0.597 5.597 18 Si 0.775 3.225 19 H -0.189 1.189 20 H -0.215 1.215 21 H -0.169 1.169 22 C -0.179 4.179 23 C -0.203 4.203 24 C -0.235 4.235 25 H 0.081 0.919 26 H 0.082 0.918 27 H 0.066 0.934 28 H 0.071 0.929 29 H 0.067 0.933 30 H 0.110 0.890 31 H 0.104 0.896 32 H 0.248 0.752 33 H 0.158 0.842 34 H 0.161 0.839 35 H 0.083 0.917 36 H 0.056 0.944 37 H 0.046 0.954 38 H 0.040 0.960 39 H 0.073 0.927 40 H 0.140 0.860 41 H 0.101 0.899 42 H 0.129 0.871 43 H 0.113 0.887 44 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -4.285 21.027 -10.688 23.974 hybrid contribution 0.049 -0.144 -0.104 0.184 sum -4.236 20.883 -10.792 23.886 Atomic orbital electron populations 1.21740 0.94674 1.01709 1.02505 1.21540 0.96812 0.96852 1.01448 1.21816 0.91472 0.97115 1.04506 1.20600 0.94825 0.91291 0.86547 0.92176 1.46135 1.17201 1.58286 1.14232 1.22226 0.81775 0.76842 0.91595 1.90582 1.57578 1.59686 1.37706 1.21649 0.89735 0.97787 0.94032 0.86530 1.59013 1.04557 1.18892 1.52337 1.21237 0.99309 0.92717 0.98328 1.19367 0.97042 0.93368 0.93710 1.21566 1.30731 1.02341 1.02258 0.95436 1.26008 0.97047 0.95011 1.01247 1.70088 1.47351 1.14041 1.28179 0.85632 0.79825 0.78424 0.78618 1.18864 1.21546 1.16865 1.22731 0.95159 0.97546 1.02499 1.22955 1.03751 1.02873 0.90728 1.23191 0.94381 1.03512 1.02397 0.91910 0.91775 0.93387 0.92948 0.93286 0.88990 0.89591 0.75238 0.84174 0.83904 0.91699 0.94393 0.95354 0.96003 0.92674 0.85998 0.89884 0.87079 0.88683 0.89149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.30 9.91 71.98 0.71 -1.59 16 2 C -0.13 -2.34 5.82 30.60 0.18 -2.16 16 3 C -0.11 -1.61 4.74 30.59 0.14 -1.46 16 4 C 0.17 3.35 2.27 44.99 0.10 3.45 16 5 H 0.06 1.52 7.34 -2.38 -0.02 1.50 16 6 N -0.71 -15.19 4.51 -442.55 -2.00 -17.19 16 7 C 0.49 13.64 6.40 87.66 0.56 14.20 16 8 O -0.58 -19.13 13.28 -3.02 -0.04 -19.17 16 9 C 0.08 2.46 3.15 44.17 0.14 2.60 16 10 H 0.12 2.97 8.14 -2.39 -0.02 2.95 16 11 N -0.82 -24.40 8.44 -171.80 -1.45 -25.85 16 12 C -0.08 -2.93 4.78 30.60 0.15 -2.79 16 13 C 0.00 0.12 3.93 29.85 0.12 0.24 16 14 C -0.53 -30.80 9.66 25.60 0.25 -30.55 16 15 H 0.03 1.76 7.99 -2.91 -0.02 1.74 16 16 C 0.00 0.18 5.47 84.65 0.46 0.64 16 17 N -0.96 -60.73 13.96 21.45 0.30 -60.44 16 18 Si 0.95 44.82 27.47 68.60 1.88 46.70 16 19 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 20 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 21 H -0.25 -10.90 6.54 99.48 0.65 -10.25 16 22 C -0.16 -2.79 5.36 -10.79 -0.06 -2.85 16 23 C -0.17 -2.93 10.18 30.62 0.31 -2.62 16 24 C -0.20 -4.17 9.74 30.62 0.30 -3.87 16 25 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 26 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 27 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 28 H 0.05 1.11 7.75 -2.39 -0.02 1.10 16 29 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.41 7.24 8.60 -92.71 -0.80 6.44 16 33 H 0.34 10.89 8.58 -89.70 -0.77 10.12 16 34 H 0.35 8.75 9.06 -89.69 -0.81 7.93 16 35 H 0.06 2.34 8.14 -2.38 -0.02 2.32 16 36 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.03 1.34 6.81 -2.39 -0.02 1.33 16 38 H 0.02 0.95 7.57 -2.39 -0.02 0.93 16 39 H 0.26 15.70 8.31 -92.70 -0.77 14.93 16 40 H 0.12 1.68 8.11 -2.39 -0.02 1.66 16 41 H 0.08 1.64 8.05 -2.39 -0.02 1.62 16 42 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 43 H 0.09 1.77 8.14 -2.38 -0.02 1.75 16 44 H 0.09 2.49 5.02 -2.39 -0.01 2.48 16 Total: -1.00 -70.05 352.57 0.62 -69.43 By element: Atomic # 1 Polarization: 34.71 SS G_CDS: -1.44 Total: 33.27 kcal Atomic # 6 Polarization: -30.14 SS G_CDS: 3.36 Total: -26.77 kcal Atomic # 7 Polarization: -100.32 SS G_CDS: -3.15 Total: -103.47 kcal Atomic # 8 Polarization: -19.13 SS G_CDS: -0.04 Total: -19.17 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 1.88 Total: 46.70 kcal Total: -70.05 0.62 -69.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691626921.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.842 kcal (2) G-P(sol) polarization free energy of solvation -70.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds