Wall clock time and date at job start Mon Mar 30 2020 04:48:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46626 * 2 1 4 4 C 1.53006 * 109.47000 * 180.02562 * 3 2 1 5 5 H 1.08998 * 109.46741 * 54.99859 * 4 3 2 6 6 N 1.46500 * 109.46857 * 295.00659 * 4 3 2 7 7 C 1.34778 * 119.99992 * 154.99962 * 6 4 3 8 8 O 1.21279 * 120.00090 * 359.97438 * 7 6 4 9 9 C 1.50699 * 119.99861 * 179.97438 * 7 6 4 10 10 H 1.08996 * 109.47281 * 40.00333 * 9 7 6 11 11 N 1.46912 * 109.46687 * 160.00123 * 9 7 6 12 12 C 1.52994 * 109.47436 * 279.99849 * 9 7 6 13 13 C 1.53001 * 109.47143 * 175.00241 * 12 9 7 14 14 C 1.50705 * 109.47243 * 180.02562 * 13 12 9 15 15 H 1.07995 * 119.99722 * 359.97438 * 14 13 12 16 16 C 1.37874 * 119.99988 * 180.02562 * 14 13 12 17 17 N 1.31520 * 120.00106 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 120.00005 * 179.97438 * 16 14 13 19 19 H 1.48505 * 109.47118 * 59.99713 * 18 16 14 20 20 H 1.48499 * 109.47246 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.47119 * 299.99967 * 18 16 14 22 22 C 1.52999 * 109.47184 * 175.00261 * 4 3 2 23 23 C 1.52993 * 117.49796 * 248.74678 * 22 4 3 24 24 C 1.52997 * 117.49796 * 180.08815 * 22 4 3 25 25 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47050 * 299.99699 * 1 2 3 27 27 H 1.09001 * 109.46801 * 59.99811 * 1 2 3 28 28 H 1.08993 * 109.46955 * 120.00472 * 2 1 3 29 29 H 1.09000 * 109.47050 * 240.00301 * 2 1 3 30 30 H 1.08993 * 109.47839 * 299.99931 * 3 2 1 31 31 H 1.09000 * 109.47160 * 60.00369 * 3 2 1 32 32 H 0.97002 * 119.99969 * 334.98842 * 6 4 3 33 33 H 1.00893 * 110.99916 * 59.99871 * 11 9 7 34 34 H 1.00901 * 110.99784 * 183.95671 * 11 9 7 35 35 H 1.09000 * 109.47702 * 295.00275 * 12 9 7 36 36 H 1.08996 * 109.46946 * 55.00235 * 12 9 7 37 37 H 1.09000 * 109.47117 * 299.99821 * 13 12 9 38 38 H 1.08996 * 109.47205 * 60.00152 * 13 12 9 39 39 H 0.97002 * 119.99824 * 180.02562 * 17 16 14 40 40 H 1.08996 * 115.55105 * 34.41713 * 22 4 3 41 41 H 1.09005 * 117.50251 * 0.02562 * 23 22 4 42 42 H 1.09004 * 117.49991 * 145.02129 * 23 22 4 43 43 H 1.09001 * 117.49925 * 214.98366 * 24 22 4 44 44 H 1.09001 * 117.49904 * 359.97438 * 24 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 1 3.9329 0.8533 -0.8427 6 7 4.0588 0.8586 1.2508 7 6 5.2809 0.2921 1.2980 8 8 5.9756 0.2654 0.3043 9 6 5.7839 -0.3082 2.5855 10 1 4.9695 -0.8338 3.0839 11 7 6.8704 -1.2530 2.2936 12 6 6.3064 0.8041 3.4969 13 6 6.7014 0.2107 4.8507 14 6 7.2155 1.3063 5.7487 15 1 7.2568 2.3240 5.3895 16 6 7.6342 1.0093 7.0283 17 7 7.5844 -0.2301 7.4655 18 14 8.2721 2.3673 8.1411 19 1 7.2094 3.3857 8.3385 20 1 8.6554 1.7914 9.4551 21 1 9.4580 3.0046 7.5145 22 6 4.0799 2.8797 -0.1263 23 6 4.7786 3.2699 -1.4303 24 6 5.5948 3.0924 -0.1476 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 1.8934 -0.5138 -0.8900 30 1 1.6767 1.9564 -0.8899 31 1 1.6766 1.9563 0.8900 32 1 3.5031 0.8798 2.0456 33 1 7.6380 -0.7895 1.8310 34 1 7.1815 -1.7170 3.1338 35 1 7.1771 1.2716 3.0372 36 1 5.5265 1.5517 3.6415 37 1 5.8307 -0.2568 5.3105 38 1 7.4813 -0.5369 4.7061 39 1 7.8786 -0.4389 8.3659 40 1 3.4719 3.6389 0.3656 41 1 4.8747 2.5029 -2.1989 42 1 4.6306 4.2860 -1.7961 43 1 5.9835 3.9918 0.3301 44 1 6.2283 2.2086 -0.0717 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691626924.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:48:53 Heat of formation + Delta-G solvation = -46.683330 kcal Electronic energy + Delta-G solvation = -21040.707058 eV Core-core repulsion = 17992.386221 eV Total energy + Delta-G solvation = -3048.320837 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.02880 -37.62922 -35.40543 -35.33768 -33.26418 -32.82574 -29.88205 -29.33709 -26.42580 -24.54390 -23.60491 -22.24300 -21.19611 -20.86267 -20.25505 -19.76538 -17.32512 -16.44010 -16.11248 -15.61934 -15.03603 -14.93227 -14.63981 -14.41145 -14.04022 -13.74429 -13.49332 -13.04609 -12.84917 -12.81312 -12.16877 -12.14118 -11.77917 -11.67290 -11.40768 -11.30724 -11.16906 -11.03939 -10.88396 -10.84435 -10.70093 -10.31316 -10.06429 -9.96974 -9.84042 -9.27434 -9.16345 -8.80548 -8.43375 -8.15803 -6.08144 -4.11239 2.96797 3.25892 3.28489 3.33362 3.35834 3.99328 4.39289 4.40052 4.78416 4.80877 4.99455 5.04535 5.10890 5.13817 5.20493 5.26778 5.28132 5.36556 5.53788 5.57964 5.61023 5.62909 5.70252 5.79854 5.84764 5.89451 6.00246 6.07533 6.13589 6.19254 6.30501 6.44892 6.54369 6.68185 6.89427 7.46912 7.52918 7.62946 7.78125 7.88923 7.92761 8.31789 8.55168 8.94562 9.53578 11.02728 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.019076 B = 0.004120 C = 0.003956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.434205 B = 6793.952993 C = 7076.187512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.126 4.126 3 C -0.123 4.123 4 C 0.176 3.824 5 H 0.086 0.914 6 N -0.725 5.725 7 C 0.529 3.471 8 O -0.538 6.538 9 C 0.074 3.926 10 H 0.094 0.906 11 N -0.831 5.831 12 C -0.136 4.136 13 C 0.024 3.976 14 C -0.524 4.524 15 H 0.054 0.946 16 C 0.059 3.941 17 N -0.893 5.893 18 Si 0.892 3.108 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.277 1.277 22 C -0.171 4.171 23 C -0.174 4.174 24 C -0.180 4.180 25 H 0.053 0.947 26 H 0.054 0.946 27 H 0.052 0.948 28 H 0.066 0.934 29 H 0.061 0.939 30 H 0.076 0.924 31 H 0.069 0.931 32 H 0.399 0.601 33 H 0.345 0.655 34 H 0.353 0.647 35 H 0.054 0.946 36 H 0.056 0.944 37 H 0.018 0.982 38 H 0.017 0.983 39 H 0.262 0.738 40 H 0.101 0.899 41 H 0.092 0.908 42 H 0.089 0.911 43 H 0.086 0.914 44 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.917 3.029 -14.642 19.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.163 4.163 3 C -0.161 4.161 4 C 0.072 3.928 5 H 0.104 0.896 6 N -0.377 5.377 7 C 0.316 3.684 8 O -0.414 6.414 9 C -0.041 4.041 10 H 0.112 0.888 11 N -0.362 5.362 12 C -0.175 4.175 13 C -0.013 4.013 14 C -0.562 4.562 15 H 0.072 0.928 16 C -0.143 4.143 17 N -0.532 5.532 18 Si 0.720 3.280 19 H -0.202 1.202 20 H -0.212 1.212 21 H -0.202 1.202 22 C -0.190 4.190 23 C -0.212 4.212 24 C -0.216 4.216 25 H 0.072 0.928 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.084 0.916 29 H 0.080 0.920 30 H 0.095 0.905 31 H 0.087 0.913 32 H 0.234 0.766 33 H 0.158 0.842 34 H 0.168 0.832 35 H 0.072 0.928 36 H 0.074 0.926 37 H 0.036 0.964 38 H 0.036 0.964 39 H 0.072 0.928 40 H 0.119 0.881 41 H 0.111 0.889 42 H 0.107 0.893 43 H 0.104 0.896 44 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -11.911 2.489 -15.662 19.834 hybrid contribution 0.623 1.517 1.825 2.454 sum -11.288 4.006 -13.837 18.301 Atomic orbital electron populations 1.21772 0.95839 1.01629 1.01675 1.21536 0.95690 0.96492 1.02619 1.21870 0.93653 0.97507 1.03022 1.20487 0.93079 0.91345 0.87915 0.89576 1.46076 1.18223 1.60180 1.13231 1.20816 0.80619 0.76525 0.90397 1.90554 1.56275 1.57805 1.36794 1.21476 0.96447 0.94523 0.91691 0.88799 1.58751 1.14018 1.32484 1.30993 1.22353 1.00312 0.96800 0.98064 1.19098 0.96610 0.96268 0.89289 1.21145 1.42756 0.94345 0.97962 0.92799 1.25006 0.95705 0.95463 0.98089 1.69941 1.47540 1.17887 1.17866 0.86652 0.79398 0.82103 0.79828 1.20235 1.21208 1.20226 1.22696 0.96302 0.97757 1.02281 1.22898 1.05093 1.01893 0.91286 1.23290 0.93708 1.04451 1.00185 0.92779 0.92700 0.92901 0.91559 0.91992 0.90499 0.91280 0.76625 0.84200 0.83161 0.92755 0.92574 0.96396 0.96442 0.92836 0.88103 0.88944 0.89283 0.89568 0.86232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.91 37.16 0.37 -0.76 16 2 C -0.13 -1.09 5.82 -26.73 -0.16 -1.24 16 3 C -0.12 -1.05 4.74 -26.73 -0.13 -1.18 16 4 C 0.18 1.99 2.27 -67.93 -0.15 1.83 16 5 H 0.09 1.13 7.34 -51.93 -0.38 0.75 16 6 N -0.73 -9.12 4.51 -53.80 -0.24 -9.36 16 7 C 0.53 8.44 6.41 -10.99 -0.07 8.37 16 8 O -0.54 -9.91 13.28 5.56 0.07 -9.84 16 9 C 0.07 1.24 3.21 -68.86 -0.22 1.02 16 10 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 11 N -0.83 -14.27 8.94 -5.65 -0.05 -14.32 16 12 C -0.14 -2.64 4.78 -26.73 -0.13 -2.77 16 13 C 0.02 0.59 4.74 -27.88 -0.13 0.46 16 14 C -0.52 -14.37 9.11 -34.44 -0.31 -14.68 16 15 H 0.05 1.45 7.74 -52.49 -0.41 1.05 16 16 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 17 N -0.89 -26.04 13.29 55.43 0.74 -25.30 16 18 Si 0.89 21.29 29.54 -169.99 -5.02 16.26 16 19 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 20 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 21 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 22 C -0.17 -1.97 5.36 -90.62 -0.49 -2.45 16 23 C -0.17 -1.95 10.18 -26.70 -0.27 -2.22 16 24 C -0.18 -2.44 9.74 -26.70 -0.26 -2.70 16 25 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.07 0.62 7.75 -51.93 -0.40 0.22 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.40 4.38 8.60 -40.82 -0.35 4.03 16 33 H 0.34 6.01 8.58 -39.30 -0.34 5.67 16 34 H 0.35 6.13 7.55 -39.29 -0.30 5.83 16 35 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.02 0.44 6.87 -51.93 -0.36 0.08 16 39 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 40 H 0.10 1.07 8.11 -51.93 -0.42 0.65 16 41 H 0.09 1.04 8.05 -51.93 -0.42 0.62 16 42 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.09 1.14 8.14 -51.93 -0.42 0.71 16 44 H 0.12 1.96 5.02 -51.93 -0.26 1.70 16 LS Contribution 354.22 15.07 5.34 5.34 Total: -1.00 -30.07 354.22 -9.05 -39.12 By element: Atomic # 1 Polarization: 20.70 SS G_CDS: -7.84 Total: 12.86 kcal Atomic # 6 Polarization: -12.72 SS G_CDS: -2.05 Total: -14.77 kcal Atomic # 7 Polarization: -49.43 SS G_CDS: 0.44 Total: -48.98 kcal Atomic # 8 Polarization: -9.91 SS G_CDS: 0.07 Total: -9.84 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -30.07 -9.05 -39.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691626924.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.559 kcal (2) G-P(sol) polarization free energy of solvation -30.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds