Wall clock time and date at job start Mon Mar 30 2020 04:48:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46626 * 2 1 4 4 C 1.53006 * 109.47000 * 180.02562 * 3 2 1 5 5 H 1.08998 * 109.46741 * 54.99859 * 4 3 2 6 6 N 1.46500 * 109.46857 * 295.00659 * 4 3 2 7 7 C 1.34778 * 119.99992 * 154.99962 * 6 4 3 8 8 O 1.21279 * 120.00090 * 359.97438 * 7 6 4 9 9 C 1.50699 * 119.99861 * 179.97438 * 7 6 4 10 10 H 1.08996 * 109.47281 * 40.00333 * 9 7 6 11 11 N 1.46912 * 109.46687 * 160.00123 * 9 7 6 12 12 C 1.52994 * 109.47436 * 279.99849 * 9 7 6 13 13 C 1.53001 * 109.47143 * 175.00241 * 12 9 7 14 14 C 1.50705 * 109.47243 * 180.02562 * 13 12 9 15 15 H 1.07995 * 119.99722 * 359.97438 * 14 13 12 16 16 C 1.37874 * 119.99988 * 180.02562 * 14 13 12 17 17 N 1.31520 * 120.00106 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 120.00005 * 179.97438 * 16 14 13 19 19 H 1.48505 * 109.47118 * 59.99713 * 18 16 14 20 20 H 1.48499 * 109.47246 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.47119 * 299.99967 * 18 16 14 22 22 C 1.52999 * 109.47184 * 175.00261 * 4 3 2 23 23 C 1.52993 * 117.49796 * 248.74678 * 22 4 3 24 24 C 1.52997 * 117.49796 * 180.08815 * 22 4 3 25 25 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47050 * 299.99699 * 1 2 3 27 27 H 1.09001 * 109.46801 * 59.99811 * 1 2 3 28 28 H 1.08993 * 109.46955 * 120.00472 * 2 1 3 29 29 H 1.09000 * 109.47050 * 240.00301 * 2 1 3 30 30 H 1.08993 * 109.47839 * 299.99931 * 3 2 1 31 31 H 1.09000 * 109.47160 * 60.00369 * 3 2 1 32 32 H 0.97002 * 119.99969 * 334.98842 * 6 4 3 33 33 H 1.00893 * 110.99916 * 59.99871 * 11 9 7 34 34 H 1.00901 * 110.99784 * 183.95671 * 11 9 7 35 35 H 1.09000 * 109.47702 * 295.00275 * 12 9 7 36 36 H 1.08996 * 109.46946 * 55.00235 * 12 9 7 37 37 H 1.09000 * 109.47117 * 299.99821 * 13 12 9 38 38 H 1.08996 * 109.47205 * 60.00152 * 13 12 9 39 39 H 0.97002 * 119.99824 * 180.02562 * 17 16 14 40 40 H 1.08996 * 115.55105 * 34.41713 * 22 4 3 41 41 H 1.09005 * 117.50251 * 0.02562 * 23 22 4 42 42 H 1.09004 * 117.49991 * 145.02129 * 23 22 4 43 43 H 1.09001 * 117.49925 * 214.98366 * 24 22 4 44 44 H 1.09001 * 117.49904 * 359.97438 * 24 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 1 3.9329 0.8533 -0.8427 6 7 4.0588 0.8586 1.2508 7 6 5.2809 0.2921 1.2980 8 8 5.9756 0.2654 0.3043 9 6 5.7839 -0.3082 2.5855 10 1 4.9695 -0.8338 3.0839 11 7 6.8704 -1.2530 2.2936 12 6 6.3064 0.8041 3.4969 13 6 6.7014 0.2107 4.8507 14 6 7.2155 1.3063 5.7487 15 1 7.2568 2.3240 5.3895 16 6 7.6342 1.0093 7.0283 17 7 7.5844 -0.2301 7.4655 18 14 8.2721 2.3673 8.1411 19 1 7.2094 3.3857 8.3385 20 1 8.6554 1.7914 9.4551 21 1 9.4580 3.0046 7.5145 22 6 4.0799 2.8797 -0.1263 23 6 4.7786 3.2699 -1.4303 24 6 5.5948 3.0924 -0.1476 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 1.8934 -0.5138 -0.8900 30 1 1.6767 1.9564 -0.8899 31 1 1.6766 1.9563 0.8900 32 1 3.5031 0.8798 2.0456 33 1 7.6380 -0.7895 1.8310 34 1 7.1815 -1.7170 3.1338 35 1 7.1771 1.2716 3.0372 36 1 5.5265 1.5517 3.6415 37 1 5.8307 -0.2568 5.3105 38 1 7.4813 -0.5369 4.7061 39 1 7.8786 -0.4389 8.3659 40 1 3.4719 3.6389 0.3656 41 1 4.8747 2.5029 -2.1989 42 1 4.6306 4.2860 -1.7961 43 1 5.9835 3.9918 0.3301 44 1 6.2283 2.2086 -0.0717 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691626924.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:48:53 Heat of formation + Delta-G solvation = -65.831137 kcal Electronic energy + Delta-G solvation = -21041.537369 eV Core-core repulsion = 17992.386221 eV Total energy + Delta-G solvation = -3049.151148 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.21892 -38.72674 -36.92095 -36.24474 -34.82164 -34.23210 -31.67399 -30.25819 -28.01847 -25.86134 -24.86449 -23.23889 -22.48323 -21.90998 -21.26349 -21.12016 -18.86555 -18.10604 -17.41740 -16.64778 -16.49461 -16.08207 -15.89035 -15.70840 -15.39243 -15.10757 -14.63932 -14.35943 -14.18430 -13.90910 -13.60002 -13.42645 -12.93303 -12.88578 -12.68574 -12.59410 -12.51722 -12.30476 -12.12878 -11.88549 -11.79236 -11.70410 -11.50785 -11.31923 -11.24678 -10.98919 -10.60570 -10.55307 -9.91279 -9.62194 -8.21241 -6.31700 1.39691 1.41159 1.49223 1.67889 2.15195 2.40013 3.00461 3.12322 3.55632 3.77741 3.86206 3.97386 4.09674 4.15121 4.16603 4.19896 4.27589 4.30571 4.40909 4.64892 4.67914 4.77458 4.80603 4.84777 4.88189 4.94981 5.05470 5.09638 5.11750 5.25500 5.30336 5.34623 5.38000 5.46621 5.50124 5.63791 5.66358 5.80866 6.09110 6.21583 6.48160 6.63008 6.83551 7.34016 7.37381 8.89329 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.019076 B = 0.004120 C = 0.003956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.434205 B = 6793.952993 C = 7076.187512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.126 4.126 3 C -0.113 4.113 4 C 0.176 3.824 5 H 0.067 0.933 6 N -0.711 5.711 7 C 0.530 3.470 8 O -0.564 6.564 9 C 0.079 3.921 10 H 0.105 0.895 11 N -0.830 5.830 12 C -0.117 4.117 13 C 0.030 3.970 14 C -0.545 4.545 15 H 0.054 0.946 16 C 0.006 3.994 17 N -0.927 5.927 18 Si 0.958 3.042 19 H -0.267 1.267 20 H -0.282 1.282 21 H -0.272 1.272 22 C -0.163 4.163 23 C -0.158 4.158 24 C -0.206 4.206 25 H 0.053 0.947 26 H 0.059 0.941 27 H 0.060 0.940 28 H 0.056 0.944 29 H 0.053 0.947 30 H 0.092 0.908 31 H 0.081 0.919 32 H 0.410 0.590 33 H 0.343 0.657 34 H 0.351 0.649 35 H 0.042 0.958 36 H 0.064 0.936 37 H 0.001 0.999 38 H 0.001 0.999 39 H 0.264 0.736 40 H 0.118 0.882 41 H 0.089 0.911 42 H 0.110 0.890 43 H 0.086 0.914 44 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.465 4.548 -14.986 20.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.164 4.164 3 C -0.151 4.151 4 C 0.072 3.928 5 H 0.085 0.915 6 N -0.362 5.362 7 C 0.317 3.683 8 O -0.443 6.443 9 C -0.036 4.036 10 H 0.123 0.877 11 N -0.361 5.361 12 C -0.157 4.157 13 C -0.007 4.007 14 C -0.583 4.583 15 H 0.072 0.928 16 C -0.192 4.192 17 N -0.567 5.567 18 Si 0.783 3.217 19 H -0.192 1.192 20 H -0.208 1.208 21 H -0.197 1.197 22 C -0.182 4.182 23 C -0.195 4.195 24 C -0.243 4.243 25 H 0.072 0.928 26 H 0.078 0.922 27 H 0.080 0.920 28 H 0.074 0.926 29 H 0.072 0.928 30 H 0.111 0.889 31 H 0.100 0.900 32 H 0.246 0.754 33 H 0.156 0.844 34 H 0.166 0.834 35 H 0.060 0.940 36 H 0.083 0.917 37 H 0.020 0.980 38 H 0.019 0.981 39 H 0.073 0.927 40 H 0.136 0.864 41 H 0.108 0.892 42 H 0.128 0.872 43 H 0.104 0.896 44 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -13.495 4.020 -16.012 21.323 hybrid contribution 1.102 1.015 1.902 2.421 sum -12.393 5.035 -14.110 19.443 Atomic orbital electron populations 1.21746 0.94654 1.01887 1.02342 1.21524 0.96703 0.96386 1.01751 1.21830 0.91117 0.97719 1.04388 1.20605 0.94966 0.90859 0.86380 0.91488 1.45983 1.17067 1.58872 1.14310 1.20561 0.81467 0.76766 0.89497 1.90557 1.57295 1.58937 1.37479 1.21418 0.96565 0.93605 0.92007 0.87687 1.58769 1.14112 1.32460 1.30719 1.22080 1.00090 0.97476 0.96021 1.18965 0.95236 0.95282 0.91209 1.21588 1.42823 0.95101 0.98824 0.92783 1.25855 0.95914 0.97761 0.99695 1.70057 1.48460 1.19798 1.18339 0.85609 0.79009 0.79293 0.77801 1.19190 1.20776 1.19679 1.22788 0.94822 0.98080 1.02494 1.22953 1.03092 1.02982 0.90515 1.23163 0.94818 1.03325 1.03001 0.92810 0.92189 0.92050 0.92554 0.92835 0.88932 0.89999 0.75420 0.84420 0.83441 0.93963 0.91732 0.98036 0.98056 0.92730 0.86391 0.89239 0.87151 0.89589 0.89241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.87 9.91 71.98 0.71 -1.16 16 2 C -0.13 -1.95 5.82 30.60 0.18 -1.77 16 3 C -0.11 -1.63 4.74 30.60 0.14 -1.49 16 4 C 0.18 3.70 2.27 44.99 0.10 3.80 16 5 H 0.07 1.71 7.34 -2.39 -0.02 1.69 16 6 N -0.71 -17.07 4.51 -442.53 -2.00 -19.06 16 7 C 0.53 16.79 6.41 87.66 0.56 17.35 16 8 O -0.56 -21.04 13.28 -3.03 -0.04 -21.08 16 9 C 0.08 2.66 3.21 44.16 0.14 2.80 16 10 H 0.11 3.29 8.14 -2.39 -0.02 3.28 16 11 N -0.83 -28.90 8.94 -171.79 -1.54 -30.43 16 12 C -0.12 -4.57 4.78 30.59 0.15 -4.42 16 13 C 0.03 1.49 4.74 29.85 0.14 1.63 16 14 C -0.55 -30.04 9.11 25.60 0.23 -29.81 16 15 H 0.05 2.90 7.74 -2.91 -0.02 2.88 16 16 C 0.01 0.35 5.46 84.65 0.46 0.81 16 17 N -0.93 -54.45 13.29 21.45 0.28 -54.17 16 18 Si 0.96 43.39 29.54 68.60 2.03 45.41 16 19 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 20 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 21 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 22 C -0.16 -3.43 5.36 -10.80 -0.06 -3.49 16 23 C -0.16 -3.26 10.18 30.61 0.31 -2.95 16 24 C -0.21 -5.50 9.74 30.62 0.30 -5.20 16 25 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 26 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 27 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.06 0.98 7.75 -2.39 -0.02 0.96 16 29 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.41 8.25 8.60 -92.71 -0.80 7.45 16 33 H 0.34 12.23 8.58 -89.70 -0.77 11.46 16 34 H 0.35 12.45 7.55 -89.69 -0.68 11.77 16 35 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 36 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 37 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 38 H 0.00 0.06 6.87 -2.39 -0.02 0.04 16 39 H 0.26 14.68 8.31 -92.71 -0.77 13.91 16 40 H 0.12 2.12 8.11 -2.39 -0.02 2.10 16 41 H 0.09 1.90 8.05 -2.38 -0.02 1.89 16 42 H 0.11 1.82 8.14 -2.39 -0.02 1.80 16 43 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 44 H 0.09 3.01 5.02 -2.39 -0.01 2.99 16 Total: -1.00 -64.48 354.22 0.86 -63.62 By element: Atomic # 1 Polarization: 40.85 SS G_CDS: -1.25 Total: 39.60 kcal Atomic # 6 Polarization: -27.26 SS G_CDS: 3.38 Total: -23.88 kcal Atomic # 7 Polarization: -100.42 SS G_CDS: -3.25 Total: -103.66 kcal Atomic # 8 Polarization: -21.04 SS G_CDS: -0.04 Total: -21.08 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.41 kcal Total: -64.48 0.86 -63.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691626924.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.213 kcal (2) G-P(sol) polarization free energy of solvation -64.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds