Wall clock time and date at job start Mon Mar 30 2020 05:00:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53007 * 109.46855 * 2 1 4 4 C 1.52998 * 109.47227 * 119.99728 * 2 1 3 5 5 N 1.46909 * 109.46794 * 62.72434 * 4 2 1 6 6 C 1.46909 * 110.99472 * 76.58592 * 5 4 2 7 7 C 1.50697 * 109.46933 * 283.08723 * 6 5 4 8 8 H 1.08001 * 120.00062 * 356.39039 * 7 6 5 9 9 C 1.37875 * 119.99691 * 176.38786 * 7 6 5 10 10 N 1.31517 * 120.00181 * 179.97438 * 9 7 6 11 11 Si 1.86796 * 120.00367 * 0.02562 * 9 7 6 12 12 H 1.48495 * 109.47328 * 89.99374 * 11 9 7 13 13 H 1.48496 * 109.47465 * 209.99967 * 11 9 7 14 14 H 1.48505 * 109.46857 * 329.99707 * 11 9 7 15 15 C 1.46891 * 110.99935 * 200.53641 * 5 4 2 16 16 C 1.52997 * 109.47082 * 164.02501 * 15 5 4 17 17 H 1.09001 * 110.43976 * 56.82069 * 16 15 5 18 18 C 1.54636 * 110.48963 * 179.50556 * 16 15 5 19 19 C 1.54473 * 101.76563 * 143.47469 * 18 16 15 20 20 N 1.46763 * 105.47678 * 334.58142 * 19 18 16 21 21 C 1.46494 * 124.35333 * 197.03644 * 20 19 18 22 22 C 1.34424 * 111.29605 * 17.02012 * 20 19 18 23 23 O 1.21280 * 124.93713 * 179.62713 * 22 20 19 24 24 H 1.08997 * 109.46822 * 55.01648 * 1 2 3 25 25 H 1.08995 * 109.46959 * 295.01505 * 1 2 3 26 26 H 1.08997 * 109.47127 * 175.01325 * 1 2 3 27 27 H 1.09003 * 109.47392 * 239.99930 * 2 1 3 28 28 H 1.08996 * 109.46911 * 60.00643 * 3 2 1 29 29 H 1.09002 * 109.46709 * 179.97438 * 3 2 1 30 30 H 1.08997 * 109.47107 * 299.99458 * 3 2 1 31 31 H 1.08995 * 109.47361 * 182.71867 * 4 2 1 32 32 H 1.08994 * 109.47225 * 302.72965 * 4 2 1 33 33 H 1.08993 * 109.47457 * 43.09439 * 6 5 4 34 34 H 1.09001 * 109.46466 * 163.08908 * 6 5 4 35 35 H 0.96993 * 120.00539 * 180.02562 * 10 9 7 36 36 H 1.09005 * 109.47517 * 284.02654 * 15 5 4 37 37 H 1.08996 * 109.47161 * 44.02573 * 15 5 4 38 38 H 1.09000 * 110.96574 * 261.59545 * 18 16 15 39 39 H 1.08999 * 110.96505 * 25.35550 * 18 16 15 40 40 H 1.09004 * 110.24241 * 215.58600 * 19 18 16 41 41 H 1.08996 * 110.32351 * 93.62229 * 19 18 16 42 42 H 1.09000 * 109.47502 * 179.97438 * 21 20 19 43 43 H 1.09003 * 109.47654 * 299.95896 * 21 20 19 44 44 H 1.09007 * 109.46954 * 59.95329 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 1.6048 -2.1239 1.2168 6 6 2.4210 -2.9067 0.2791 7 6 1.9848 -2.6126 -1.1331 8 1 1.1440 -1.9593 -1.3135 9 6 2.6593 -3.1775 -2.1946 10 7 2.2784 -2.9213 -3.4271 11 14 4.1132 -4.3079 -1.8825 12 1 3.6346 -5.7085 -1.7627 13 1 5.0705 -4.2070 -3.0133 14 1 4.7906 -3.9069 -0.6233 15 6 1.6343 -2.7155 2.5610 16 6 0.8184 -4.0097 2.5666 17 1 1.1987 -4.7027 1.8161 18 6 0.8439 -4.6596 3.9696 19 6 -0.5862 -5.2337 4.0768 20 7 -1.4076 -4.4081 3.1837 21 6 -2.8707 -4.3477 3.2267 22 6 -0.6448 -3.7143 2.3213 23 8 -1.0682 -2.9605 1.4707 24 1 -0.3633 0.5892 -0.8420 25 1 -0.3633 0.4345 0.9312 26 1 -0.3633 -1.0237 -0.0893 27 1 1.8934 -0.5138 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 3.1300 1.4426 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 3.1289 -0.6792 1.2740 32 1 1.6373 -0.2364 2.1385 33 1 3.4705 -2.6378 0.3988 34 1 2.2926 -3.9693 0.4853 35 1 2.7526 -3.3189 -4.1739 36 1 2.6652 -2.9346 2.8391 37 1 1.2065 -2.0132 3.2764 38 1 1.5880 -5.4546 4.0177 39 1 1.0232 -3.9121 4.7424 40 1 -0.9482 -5.1552 5.1020 41 1 -0.6022 -6.2734 3.7503 42 1 -3.2287 -3.6612 2.4595 43 1 -3.2809 -5.3411 3.0450 44 1 -3.1911 -3.9962 4.2075 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000692720410.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:00:11 Heat of formation + Delta-G solvation = -25.231285 kcal Electronic energy + Delta-G solvation = -22206.981457 eV Core-core repulsion = 19159.590850 eV Total energy + Delta-G solvation = -3047.390607 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.14150 -37.37865 -35.87768 -34.15517 -32.68036 -31.96811 -28.64593 -27.55306 -26.66088 -26.19510 -24.74951 -22.95707 -21.43867 -20.42699 -19.00336 -18.68834 -16.90667 -16.38588 -16.11861 -15.05571 -14.92204 -14.51814 -14.03295 -13.66964 -13.58030 -13.42607 -12.94707 -12.74984 -12.49227 -12.41556 -12.29692 -12.04519 -12.01928 -11.70555 -11.50950 -11.36806 -11.12108 -10.89420 -10.76696 -10.45111 -10.21669 -9.98650 -9.83149 -9.74185 -9.49173 -9.08481 -8.82144 -8.45552 -8.38709 -7.11635 -5.92541 -3.86133 3.16307 3.27014 3.32087 3.40164 3.40904 4.48034 4.50780 4.61107 4.77052 5.01969 5.27835 5.34669 5.37432 5.42002 5.45867 5.59641 5.72868 5.77879 5.78175 5.85878 5.88953 5.91437 6.07191 6.15028 6.21083 6.35459 6.38452 6.47731 6.65755 6.75536 6.77465 6.86328 6.88958 7.02343 7.13031 7.40992 7.60455 7.65589 7.80294 8.07882 8.22735 8.76589 8.81986 9.23866 9.69492 11.19664 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.015212 B = 0.007282 C = 0.005994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1840.259307 B = 3844.035722 C = 4669.860914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.111 4.111 3 C -0.142 4.142 4 C 0.083 3.917 5 N -0.511 5.511 6 C 0.160 3.840 7 C -0.497 4.497 8 H 0.100 0.900 9 C 0.065 3.935 10 N -0.901 5.901 11 Si 0.866 3.134 12 H -0.279 1.279 13 H -0.288 1.288 14 H -0.269 1.269 15 C 0.075 3.925 16 C -0.118 4.118 17 H 0.111 0.889 18 C -0.130 4.130 19 C 0.109 3.891 20 N -0.641 5.641 21 C 0.099 3.901 22 C 0.522 3.478 23 O -0.478 6.478 24 H 0.030 0.970 25 H 0.026 0.974 26 H 0.082 0.918 27 H 0.122 0.878 28 H 0.038 0.962 29 H 0.044 0.956 30 H 0.048 0.952 31 H 0.019 0.981 32 H 0.046 0.954 33 H -0.011 1.011 34 H 0.017 0.983 35 H 0.261 0.739 36 H 0.030 0.970 37 H 0.062 0.938 38 H 0.086 0.914 39 H 0.079 0.921 40 H 0.070 0.930 41 H 0.065 0.935 42 H 0.081 0.919 43 H 0.053 0.947 44 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.705 -2.506 16.863 17.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.129 4.129 3 C -0.200 4.200 4 C -0.045 4.045 5 N -0.234 5.234 6 C 0.034 3.966 7 C -0.535 4.535 8 H 0.117 0.883 9 C -0.135 4.135 10 N -0.541 5.541 11 Si 0.694 3.306 12 H -0.205 1.205 13 H -0.214 1.214 14 H -0.194 1.194 15 C -0.054 4.054 16 C -0.140 4.140 17 H 0.128 0.872 18 C -0.168 4.168 19 C -0.015 4.015 20 N -0.380 5.380 21 C -0.044 4.044 22 C 0.308 3.692 23 O -0.348 6.348 24 H 0.049 0.951 25 H 0.045 0.955 26 H 0.101 0.899 27 H 0.140 0.860 28 H 0.057 0.943 29 H 0.063 0.937 30 H 0.067 0.933 31 H 0.038 0.962 32 H 0.064 0.936 33 H 0.006 0.994 34 H 0.035 0.965 35 H 0.071 0.929 36 H 0.048 0.952 37 H 0.081 0.919 38 H 0.105 0.895 39 H 0.098 0.902 40 H 0.089 0.911 41 H 0.083 0.917 42 H 0.100 0.900 43 H 0.072 0.928 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -4.463 -2.112 16.013 16.757 hybrid contribution 1.655 -0.852 0.482 1.923 sum -2.808 -2.964 16.495 16.992 Atomic orbital electron populations 1.21592 0.95281 1.03253 0.98026 1.21556 0.96396 0.93686 1.01296 1.21828 1.00071 0.97798 1.00254 1.21930 0.96077 0.88999 0.97491 1.61868 1.55414 1.01441 1.04654 1.20296 0.90239 0.92696 0.93362 1.21298 1.16080 1.28807 0.87364 0.88281 1.24919 0.96977 0.96409 0.95216 1.69890 1.41135 1.45016 0.98039 0.87008 0.83742 0.81910 0.77951 1.20488 1.21412 1.19400 1.21833 0.96586 0.93907 0.93123 1.22034 0.94664 0.99680 0.97615 0.87150 1.22642 0.96088 1.00949 0.97123 1.21918 0.90803 0.94664 0.94080 1.48245 1.06132 1.46575 1.37051 1.21417 0.79011 1.01864 1.02061 1.20691 0.88479 0.79572 0.80465 1.90777 1.77645 1.34315 1.32083 0.95084 0.95464 0.89883 0.86020 0.94335 0.93723 0.93272 0.96240 0.93596 0.99359 0.96544 0.92918 0.95175 0.91949 0.89547 0.90217 0.91127 0.91693 0.89998 0.92843 0.92925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.62 8.60 37.16 0.32 -2.30 16 2 C -0.11 -2.32 2.43 -90.62 -0.22 -2.54 16 3 C -0.14 -2.48 9.19 37.16 0.34 -2.14 16 4 C 0.08 1.65 4.42 -3.82 -0.02 1.64 16 5 N -0.51 -10.80 2.92 -236.08 -0.69 -11.49 16 6 C 0.16 3.87 3.68 -4.97 -0.02 3.85 16 7 C -0.50 -14.01 7.73 -34.44 -0.27 -14.28 16 8 H 0.10 3.04 5.28 -52.49 -0.28 2.76 16 9 C 0.07 1.90 5.47 -17.82 -0.10 1.80 16 10 N -0.90 -27.76 13.96 55.43 0.77 -26.99 16 11 Si 0.87 21.56 27.54 -169.99 -4.68 16.88 16 12 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 13 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 14 H -0.27 -6.45 6.44 56.52 0.36 -6.08 16 15 C 0.07 1.27 4.29 -3.83 -0.02 1.25 16 16 C -0.12 -1.84 2.94 -90.63 -0.27 -2.11 16 17 H 0.11 1.91 6.53 -51.93 -0.34 1.57 16 18 C -0.13 -1.35 6.70 -25.10 -0.17 -1.51 16 19 C 0.11 1.07 7.35 -3.13 -0.02 1.05 16 20 N -0.64 -8.69 3.33 -180.29 -0.60 -9.30 16 21 C 0.10 1.11 11.14 59.84 0.67 1.78 16 22 C 0.52 9.22 7.44 -10.86 -0.08 9.14 16 23 O -0.48 -10.63 15.83 5.56 0.09 -10.54 16 24 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 25 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.08 2.03 6.65 -51.93 -0.35 1.69 16 27 H 0.12 3.06 4.77 -51.93 -0.25 2.81 16 28 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 30 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.02 0.39 7.70 -51.93 -0.40 -0.01 16 32 H 0.05 0.83 7.63 -51.93 -0.40 0.43 16 33 H -0.01 -0.28 6.50 -51.93 -0.34 -0.61 16 34 H 0.02 0.40 5.84 -51.93 -0.30 0.09 16 35 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 36 H 0.03 0.48 8.05 -51.93 -0.42 0.06 16 37 H 0.06 0.99 7.67 -51.93 -0.40 0.59 16 38 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.08 0.74 7.91 -51.93 -0.41 0.33 16 40 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.08 1.07 7.53 -51.93 -0.39 0.68 16 43 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 LS Contribution 337.43 15.07 5.09 5.09 Total: -1.00 -32.92 337.43 -7.54 -40.45 By element: Atomic # 1 Polarization: 7.94 SS G_CDS: -7.67 Total: 0.27 kcal Atomic # 6 Polarization: -4.53 SS G_CDS: 0.15 Total: -4.37 kcal Atomic # 7 Polarization: -47.26 SS G_CDS: -0.52 Total: -47.78 kcal Atomic # 8 Polarization: -10.63 SS G_CDS: 0.09 Total: -10.54 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.68 Total: 16.88 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -32.92 -7.54 -40.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692720410.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.221 kcal (2) G-P(sol) polarization free energy of solvation -32.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds