Wall clock time and date at job start Mon Mar 30 2020 05:00:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53007 * 109.46855 * 2 1 4 4 C 1.52998 * 109.47227 * 119.99728 * 2 1 3 5 5 N 1.46909 * 109.46794 * 62.72434 * 4 2 1 6 6 C 1.46909 * 110.99472 * 76.58592 * 5 4 2 7 7 C 1.50697 * 109.46933 * 283.08723 * 6 5 4 8 8 H 1.08001 * 120.00062 * 356.39039 * 7 6 5 9 9 C 1.37875 * 119.99691 * 176.38786 * 7 6 5 10 10 N 1.31517 * 120.00181 * 179.97438 * 9 7 6 11 11 Si 1.86796 * 120.00367 * 0.02562 * 9 7 6 12 12 H 1.48495 * 109.47328 * 89.99374 * 11 9 7 13 13 H 1.48496 * 109.47465 * 209.99967 * 11 9 7 14 14 H 1.48505 * 109.46857 * 329.99707 * 11 9 7 15 15 C 1.46891 * 110.99935 * 200.53641 * 5 4 2 16 16 C 1.52997 * 109.47082 * 164.02501 * 15 5 4 17 17 H 1.09001 * 110.43976 * 56.82069 * 16 15 5 18 18 C 1.54636 * 110.48963 * 179.50556 * 16 15 5 19 19 C 1.54473 * 101.76563 * 143.47469 * 18 16 15 20 20 N 1.46763 * 105.47678 * 334.58142 * 19 18 16 21 21 C 1.46494 * 124.35333 * 197.03644 * 20 19 18 22 22 C 1.34424 * 111.29605 * 17.02012 * 20 19 18 23 23 O 1.21280 * 124.93713 * 179.62713 * 22 20 19 24 24 H 1.08997 * 109.46822 * 55.01648 * 1 2 3 25 25 H 1.08995 * 109.46959 * 295.01505 * 1 2 3 26 26 H 1.08997 * 109.47127 * 175.01325 * 1 2 3 27 27 H 1.09003 * 109.47392 * 239.99930 * 2 1 3 28 28 H 1.08996 * 109.46911 * 60.00643 * 3 2 1 29 29 H 1.09002 * 109.46709 * 179.97438 * 3 2 1 30 30 H 1.08997 * 109.47107 * 299.99458 * 3 2 1 31 31 H 1.08995 * 109.47361 * 182.71867 * 4 2 1 32 32 H 1.08994 * 109.47225 * 302.72965 * 4 2 1 33 33 H 1.08993 * 109.47457 * 43.09439 * 6 5 4 34 34 H 1.09001 * 109.46466 * 163.08908 * 6 5 4 35 35 H 0.96993 * 120.00539 * 180.02562 * 10 9 7 36 36 H 1.09005 * 109.47517 * 284.02654 * 15 5 4 37 37 H 1.08996 * 109.47161 * 44.02573 * 15 5 4 38 38 H 1.09000 * 110.96574 * 261.59545 * 18 16 15 39 39 H 1.08999 * 110.96505 * 25.35550 * 18 16 15 40 40 H 1.09004 * 110.24241 * 215.58600 * 19 18 16 41 41 H 1.08996 * 110.32351 * 93.62229 * 19 18 16 42 42 H 1.09000 * 109.47502 * 179.97438 * 21 20 19 43 43 H 1.09003 * 109.47654 * 299.95896 * 21 20 19 44 44 H 1.09007 * 109.46954 * 59.95329 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 1.6048 -2.1239 1.2168 6 6 2.4210 -2.9067 0.2791 7 6 1.9848 -2.6126 -1.1331 8 1 1.1440 -1.9593 -1.3135 9 6 2.6593 -3.1775 -2.1946 10 7 2.2784 -2.9213 -3.4271 11 14 4.1132 -4.3079 -1.8825 12 1 3.6346 -5.7085 -1.7627 13 1 5.0705 -4.2070 -3.0133 14 1 4.7906 -3.9069 -0.6233 15 6 1.6343 -2.7155 2.5610 16 6 0.8184 -4.0097 2.5666 17 1 1.1987 -4.7027 1.8161 18 6 0.8439 -4.6596 3.9696 19 6 -0.5862 -5.2337 4.0768 20 7 -1.4076 -4.4081 3.1837 21 6 -2.8707 -4.3477 3.2267 22 6 -0.6448 -3.7143 2.3213 23 8 -1.0682 -2.9605 1.4707 24 1 -0.3633 0.5892 -0.8420 25 1 -0.3633 0.4345 0.9312 26 1 -0.3633 -1.0237 -0.0893 27 1 1.8934 -0.5138 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 3.1300 1.4426 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 3.1289 -0.6792 1.2740 32 1 1.6373 -0.2364 2.1385 33 1 3.4705 -2.6378 0.3988 34 1 2.2926 -3.9693 0.4853 35 1 2.7526 -3.3189 -4.1739 36 1 2.6652 -2.9346 2.8391 37 1 1.2065 -2.0132 3.2764 38 1 1.5880 -5.4546 4.0177 39 1 1.0232 -3.9121 4.7424 40 1 -0.9482 -5.1552 5.1020 41 1 -0.6022 -6.2734 3.7503 42 1 -3.2287 -3.6612 2.4595 43 1 -3.2809 -5.3411 3.0450 44 1 -3.1911 -3.9962 4.2075 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000692720410.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:00:10 Heat of formation + Delta-G solvation = -47.485616 kcal Electronic energy + Delta-G solvation = -22207.946477 eV Core-core repulsion = 19159.590850 eV Total energy + Delta-G solvation = -3048.355627 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.32100 -38.99156 -37.15835 -35.60622 -34.66682 -33.39624 -30.24582 -29.07546 -27.80459 -27.68797 -26.14624 -24.65554 -22.58760 -21.95795 -20.72293 -19.92879 -18.82659 -17.64700 -17.26203 -16.61669 -16.47244 -16.07022 -15.51822 -15.31654 -14.86524 -14.54855 -14.47810 -14.40467 -14.15321 -13.86313 -13.50783 -13.34853 -13.18008 -13.03518 -12.94487 -12.84844 -12.57001 -12.39745 -12.21861 -12.10451 -11.85045 -11.63597 -11.60635 -11.46547 -11.23877 -10.88614 -10.54020 -10.41735 -9.50714 -8.72488 -8.15032 -6.12957 1.34106 1.36036 1.45699 1.86240 2.27020 2.40364 3.15107 3.19337 3.64923 3.72333 3.96667 4.15861 4.28960 4.32342 4.37577 4.46525 4.51891 4.55871 4.67274 4.69443 4.73241 4.78654 4.82256 4.88423 4.90641 4.94076 4.98791 5.02685 5.08501 5.12900 5.19005 5.29548 5.31273 5.45277 5.68269 5.75737 5.84345 5.93687 6.19827 6.29563 6.59362 6.83942 6.96581 7.46229 7.51298 9.00723 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.015212 B = 0.007282 C = 0.005994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1840.259307 B = 3844.035722 C = 4669.860914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.111 4.111 3 C -0.133 4.133 4 C 0.085 3.915 5 N -0.530 5.530 6 C 0.174 3.826 7 C -0.494 4.494 8 H 0.059 0.941 9 C 0.001 3.999 10 N -0.953 5.953 11 Si 0.936 3.064 12 H -0.270 1.270 13 H -0.287 1.287 14 H -0.249 1.249 15 C 0.074 3.926 16 C -0.122 4.122 17 H 0.088 0.912 18 C -0.114 4.114 19 C 0.105 3.895 20 N -0.638 5.638 21 C 0.094 3.906 22 C 0.506 3.494 23 O -0.542 6.542 24 H 0.029 0.971 25 H 0.045 0.955 26 H 0.041 0.959 27 H 0.072 0.928 28 H 0.064 0.936 29 H 0.051 0.949 30 H 0.047 0.953 31 H 0.021 0.979 32 H 0.070 0.930 33 H -0.013 1.013 34 H 0.021 0.979 35 H 0.261 0.739 36 H 0.049 0.951 37 H 0.076 0.924 38 H 0.111 0.889 39 H 0.098 0.902 40 H 0.105 0.895 41 H 0.079 0.921 42 H 0.052 0.948 43 H 0.073 0.927 44 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.605 -3.566 20.805 21.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.130 4.130 3 C -0.191 4.191 4 C -0.043 4.043 5 N -0.254 5.254 6 C 0.047 3.953 7 C -0.532 4.532 8 H 0.077 0.923 9 C -0.194 4.194 10 N -0.596 5.596 11 Si 0.761 3.239 12 H -0.196 1.196 13 H -0.213 1.213 14 H -0.173 1.173 15 C -0.055 4.055 16 C -0.145 4.145 17 H 0.106 0.894 18 C -0.152 4.152 19 C -0.017 4.017 20 N -0.375 5.375 21 C -0.048 4.048 22 C 0.293 3.707 23 O -0.418 6.418 24 H 0.048 0.952 25 H 0.064 0.936 26 H 0.060 0.940 27 H 0.090 0.910 28 H 0.083 0.917 29 H 0.070 0.930 30 H 0.067 0.933 31 H 0.039 0.961 32 H 0.089 0.911 33 H 0.005 0.995 34 H 0.039 0.961 35 H 0.070 0.930 36 H 0.067 0.933 37 H 0.095 0.905 38 H 0.129 0.871 39 H 0.116 0.884 40 H 0.123 0.877 41 H 0.097 0.903 42 H 0.071 0.929 43 H 0.092 0.908 44 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -3.374 -3.209 20.035 20.569 hybrid contribution 1.156 -0.495 -0.699 1.438 sum -2.218 -3.704 19.337 19.813 Atomic orbital electron populations 1.21405 0.95752 1.00730 0.98847 1.21419 0.95927 0.95720 0.99944 1.21727 1.00467 0.95388 1.01505 1.21932 0.96150 0.88562 0.97621 1.61729 1.54993 1.01879 1.06762 1.20007 0.90219 0.93289 0.91826 1.21545 1.14500 1.27219 0.89953 0.92320 1.25801 1.00409 0.98455 0.94783 1.70069 1.43193 1.47090 0.99207 0.85875 0.79829 0.79720 0.78480 1.19556 1.21348 1.17277 1.21962 0.97996 0.94722 0.90788 1.22048 0.92947 0.98925 1.00538 0.89380 1.22689 0.97167 1.01692 0.93695 1.22248 0.89874 0.94547 0.95057 1.48418 1.07149 1.45597 1.36331 1.21570 0.77928 1.02503 1.02767 1.21198 0.89934 0.79279 0.80254 1.90751 1.78849 1.37368 1.34820 0.95184 0.93573 0.93964 0.90986 0.91739 0.93002 0.93340 0.96062 0.91137 0.99508 0.96147 0.93027 0.93318 0.90516 0.87060 0.88378 0.87663 0.90314 0.92864 0.90832 0.89967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.83 8.60 71.98 0.62 -4.21 16 2 C -0.11 -4.77 2.43 -10.79 -0.03 -4.79 16 3 C -0.13 -4.55 9.19 71.98 0.66 -3.89 16 4 C 0.09 3.34 4.42 86.30 0.38 3.72 16 5 N -0.53 -22.48 2.92 -900.81 -2.63 -25.11 16 6 C 0.17 8.45 3.68 85.55 0.31 8.76 16 7 C -0.49 -29.14 7.73 25.60 0.20 -28.94 16 8 H 0.06 3.89 5.28 -2.91 -0.02 3.87 16 9 C 0.00 0.07 5.47 84.65 0.46 0.53 16 10 N -0.95 -61.66 13.96 21.45 0.30 -61.36 16 11 Si 0.94 45.14 27.54 68.60 1.89 47.02 16 12 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 13 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 14 H -0.25 -11.08 6.44 99.48 0.64 -10.44 16 15 C 0.07 2.36 4.29 86.30 0.37 2.73 16 16 C -0.12 -3.62 2.94 -10.80 -0.03 -3.65 16 17 H 0.09 2.99 6.53 -2.39 -0.02 2.97 16 18 C -0.11 -1.89 6.70 31.65 0.21 -1.68 16 19 C 0.10 1.62 7.35 86.83 0.64 2.26 16 20 N -0.64 -16.06 3.33 -842.91 -2.81 -18.87 16 21 C 0.09 1.96 11.14 127.77 1.42 3.39 16 22 C 0.51 17.81 7.44 87.90 0.65 18.47 16 23 O -0.54 -25.30 15.83 -3.03 -0.05 -25.35 16 24 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 25 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 26 H 0.04 2.20 6.65 -2.39 -0.02 2.18 16 27 H 0.07 3.85 4.77 -2.39 -0.01 3.84 16 28 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 29 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 30 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.02 0.82 7.70 -2.39 -0.02 0.80 16 32 H 0.07 2.40 7.63 -2.39 -0.02 2.38 16 33 H -0.01 -0.61 6.50 -2.39 -0.02 -0.63 16 34 H 0.02 0.98 5.84 -2.39 -0.01 0.97 16 35 H 0.26 15.86 8.31 -92.71 -0.77 15.08 16 36 H 0.05 1.39 8.05 -2.38 -0.02 1.37 16 37 H 0.08 2.22 7.67 -2.39 -0.02 2.20 16 38 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 39 H 0.10 1.31 7.91 -2.39 -0.02 1.29 16 40 H 0.11 0.99 8.14 -2.38 -0.02 0.97 16 41 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 42 H 0.05 1.42 7.53 -2.39 -0.02 1.41 16 43 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 44 H 0.08 1.24 8.14 -2.38 -0.02 1.22 16 Total: -1.00 -78.11 337.43 3.47 -74.63 By element: Atomic # 1 Polarization: 15.44 SS G_CDS: 0.89 Total: 16.33 kcal Atomic # 6 Polarization: -13.18 SS G_CDS: 5.88 Total: -7.31 kcal Atomic # 7 Polarization: -100.20 SS G_CDS: -5.14 Total: -105.33 kcal Atomic # 8 Polarization: -25.30 SS G_CDS: -0.05 Total: -25.35 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 1.89 Total: 47.02 kcal Total: -78.11 3.47 -74.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692720410.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.147 kcal (2) G-P(sol) polarization free energy of solvation -78.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds