Wall clock time and date at job start Mon Mar 30 2020 05:00:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53011 * 109.47006 * 2 1 4 4 C 1.52998 * 109.47412 * 119.99700 * 2 1 3 5 5 N 1.46902 * 109.47171 * 174.65565 * 4 2 1 6 6 C 1.46900 * 110.99820 * 163.93423 * 5 4 2 7 7 C 1.50705 * 109.46931 * 296.41762 * 6 5 4 8 8 H 1.08002 * 119.99931 * 359.97438 * 7 6 5 9 9 C 1.37871 * 119.99928 * 180.02562 * 7 6 5 10 10 N 1.31516 * 120.00044 * 359.97438 * 9 7 6 11 11 Si 1.86803 * 120.00087 * 179.97438 * 9 7 6 12 12 H 1.48504 * 109.46866 * 59.99441 * 11 9 7 13 13 H 1.48495 * 109.47374 * 179.97438 * 11 9 7 14 14 H 1.48502 * 109.46832 * 299.99843 * 11 9 7 15 15 C 1.46905 * 110.99574 * 287.87909 * 5 4 2 16 16 C 1.53002 * 109.46686 * 163.39412 * 15 5 4 17 17 H 1.09003 * 110.43838 * 333.42595 * 16 15 5 18 18 C 1.54630 * 110.48493 * 210.74263 * 16 15 5 19 19 C 1.54480 * 101.76616 * 266.11959 * 18 16 15 20 20 N 1.46762 * 105.47426 * 334.58790 * 19 18 16 21 21 C 1.46494 * 124.34969 * 196.99615 * 20 19 18 22 22 C 1.34419 * 111.29814 * 17.01266 * 20 19 18 23 23 O 1.21289 * 124.93927 * 179.63003 * 22 20 19 24 24 H 1.09005 * 109.47309 * 60.00113 * 1 2 3 25 25 H 1.08994 * 109.46820 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47294 * 300.00202 * 1 2 3 27 27 H 1.08997 * 109.47303 * 240.00488 * 2 1 3 28 28 H 1.08999 * 109.46724 * 175.50610 * 3 2 1 29 29 H 1.09004 * 109.46732 * 295.50527 * 3 2 1 30 30 H 1.08994 * 109.47289 * 55.50293 * 3 2 1 31 31 H 1.08997 * 109.47415 * 294.65444 * 4 2 1 32 32 H 1.08998 * 109.47210 * 54.65316 * 4 2 1 33 33 H 1.08995 * 109.47427 * 56.41395 * 6 5 4 34 34 H 1.08997 * 109.46696 * 176.41739 * 6 5 4 35 35 H 0.97003 * 119.99552 * 180.02562 * 10 9 7 36 36 H 1.08994 * 109.47715 * 283.39901 * 15 5 4 37 37 H 1.09000 * 109.46902 * 43.40271 * 15 5 4 38 38 H 1.08998 * 110.96841 * 24.24329 * 18 16 15 39 39 H 1.09002 * 110.96533 * 148.00074 * 18 16 15 40 40 H 1.08993 * 110.24546 * 215.58245 * 19 18 16 41 41 H 1.08999 * 110.31805 * 93.62462 * 19 18 16 42 42 H 1.08995 * 109.47329 * 179.97438 * 21 20 19 43 43 H 1.08997 * 109.47030 * 299.99735 * 21 20 19 44 44 H 1.08996 * 109.47429 * 59.99440 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 3.5034 -0.8339 1.1864 6 6 4.0629 -1.1642 2.5039 7 6 3.7791 -0.0399 3.4665 8 1 3.2375 0.8329 3.1327 9 6 4.2116 -0.1251 4.7728 10 7 4.8714 -1.1877 5.1791 11 14 3.8603 1.2688 5.9658 12 1 2.3925 1.4599 6.0854 13 1 4.4258 0.9349 7.2976 14 1 4.4829 2.5196 5.4626 15 6 3.9125 -1.8209 0.1783 16 6 5.3923 -1.6240 -0.1570 17 1 5.6887 -0.5904 0.0214 18 6 5.6728 -2.0249 -1.6239 19 6 6.1168 -3.4964 -1.4689 20 7 6.6455 -3.6042 -0.1040 21 6 7.4951 -4.6998 0.3691 22 6 6.2496 -2.5687 0.6561 23 8 6.5383 -2.4139 1.8239 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 1.8933 -0.5137 -0.8900 28 1 3.1270 1.4436 0.0805 29 1 1.7438 1.9326 -0.9276 30 1 1.6124 1.9792 0.8469 31 1 1.7570 -0.1550 2.1366 32 1 1.6007 -1.7174 1.2985 33 1 3.6060 -2.0824 2.8729 34 1 5.1403 -1.3042 2.4162 35 1 5.1754 -1.2477 6.0983 36 1 3.7595 -2.8261 0.5708 37 1 3.3149 -1.6882 -0.7236 38 1 4.7685 -1.9518 -2.2280 39 1 6.4733 -1.4185 -2.0477 40 1 6.8945 -3.7341 -2.1946 41 1 5.2650 -4.1643 -1.5973 42 1 7.7472 -4.5375 1.4170 43 1 6.9611 -5.6444 0.2657 44 1 8.4093 -4.7326 -0.2233 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000692720413.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:00:14 Heat of formation + Delta-G solvation = -32.008865 kcal Electronic energy + Delta-G solvation = -21995.857636 eV Core-core repulsion = 18948.173131 eV Total energy + Delta-G solvation = -3047.684505 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.23773 -37.31136 -36.00234 -34.21921 -32.84341 -31.80314 -28.37671 -26.89361 -26.64438 -26.53903 -24.93591 -23.28349 -21.44537 -20.35899 -19.20460 -18.98715 -16.33019 -16.28398 -15.88106 -15.17802 -14.95476 -14.50940 -14.19043 -13.85151 -13.48751 -13.48179 -13.22040 -12.80002 -12.48586 -12.37831 -12.20436 -12.04349 -11.85384 -11.78515 -11.62394 -11.23885 -10.96686 -10.83232 -10.71562 -10.55369 -10.54176 -10.43051 -10.11544 -9.82489 -9.47646 -9.20303 -8.73887 -8.44325 -8.14156 -7.11605 -5.78595 -3.79582 3.12695 3.29580 3.43845 3.47793 3.50347 4.55502 4.60651 4.64949 4.88411 5.00458 5.28002 5.38010 5.42571 5.44293 5.48208 5.53733 5.55152 5.69455 5.76272 5.84178 5.88830 5.95204 5.99012 6.02728 6.09202 6.13994 6.26600 6.32040 6.45863 6.51769 6.60224 6.65007 6.80808 6.97080 7.00918 7.38322 7.60115 7.71654 7.98403 8.38399 8.41548 8.76278 8.76956 9.28520 9.81283 11.31129 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.012959 B = 0.007735 C = 0.005196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2160.157793 B = 3619.091022 C = 5387.681659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.092 4.092 3 C -0.134 4.134 4 C 0.064 3.936 5 N -0.531 5.531 6 C 0.168 3.832 7 C -0.507 4.507 8 H 0.059 0.941 9 C 0.056 3.944 10 N -0.888 5.888 11 Si 0.890 3.110 12 H -0.280 1.280 13 H -0.290 1.290 14 H -0.278 1.278 15 C 0.075 3.925 16 C -0.114 4.114 17 H 0.117 0.883 18 C -0.128 4.128 19 C 0.107 3.893 20 N -0.636 5.636 21 C 0.097 3.903 22 C 0.510 3.490 23 O -0.484 6.484 24 H 0.048 0.952 25 H 0.047 0.953 26 H 0.053 0.947 27 H 0.059 0.941 28 H 0.071 0.929 29 H 0.035 0.965 30 H 0.048 0.952 31 H 0.087 0.913 32 H 0.014 0.986 33 H -0.022 1.022 34 H 0.080 0.920 35 H 0.258 0.742 36 H 0.022 0.978 37 H 0.071 0.929 38 H 0.088 0.912 39 H 0.080 0.920 40 H 0.071 0.929 41 H 0.065 0.935 42 H 0.082 0.918 43 H 0.054 0.946 44 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.677 -4.015 -16.670 17.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.111 4.111 3 C -0.191 4.191 4 C -0.064 4.064 5 N -0.255 5.255 6 C 0.043 3.957 7 C -0.545 4.545 8 H 0.077 0.923 9 C -0.145 4.145 10 N -0.527 5.527 11 Si 0.718 3.282 12 H -0.205 1.205 13 H -0.215 1.215 14 H -0.203 1.203 15 C -0.055 4.055 16 C -0.136 4.136 17 H 0.135 0.865 18 C -0.166 4.166 19 C -0.017 4.017 20 N -0.374 5.374 21 C -0.045 4.045 22 C 0.297 3.703 23 O -0.356 6.356 24 H 0.067 0.933 25 H 0.066 0.934 26 H 0.073 0.927 27 H 0.078 0.922 28 H 0.090 0.910 29 H 0.054 0.946 30 H 0.067 0.933 31 H 0.105 0.895 32 H 0.032 0.968 33 H -0.004 1.004 34 H 0.098 0.902 35 H 0.067 0.933 36 H 0.040 0.960 37 H 0.089 0.911 38 H 0.107 0.893 39 H 0.098 0.902 40 H 0.089 0.911 41 H 0.083 0.917 42 H 0.101 0.899 43 H 0.073 0.927 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.180 -3.620 -15.936 16.343 hybrid contribution -0.501 -0.293 0.973 1.133 sum -0.681 -3.913 -14.963 15.481 Atomic orbital electron populations 1.21821 0.96282 1.00964 1.01231 1.21149 0.94087 0.97317 0.98548 1.21678 1.02908 0.94960 0.99580 1.22074 0.88736 0.97601 0.98009 1.62266 1.08452 1.45101 1.09711 1.20323 0.98686 0.94450 0.82226 1.21108 1.35546 1.03779 0.94112 0.92270 1.24964 0.95619 0.95702 0.98264 1.70015 1.38023 1.27907 1.16788 0.86703 0.78252 0.82898 0.80317 1.20548 1.21542 1.20324 1.21873 0.92062 0.94538 0.97000 1.22026 0.96650 1.01412 0.93508 0.86488 1.22703 1.02503 0.94850 0.96540 1.21968 0.98506 0.97667 0.83521 1.48197 1.52093 1.24593 1.12489 1.21452 0.93192 0.88578 1.01321 1.21057 0.80136 0.82163 0.86980 1.90840 1.55690 1.74501 1.14534 0.93328 0.93389 0.92738 0.92246 0.90961 0.94625 0.93328 0.89462 0.96779 1.00386 0.90231 0.93276 0.96016 0.91105 0.89336 0.90174 0.91059 0.91714 0.89889 0.92739 0.92745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 9.19 37.16 0.34 -1.59 16 2 C -0.09 -1.43 2.94 -90.62 -0.27 -1.69 16 3 C -0.13 -2.09 9.14 37.16 0.34 -1.75 16 4 C 0.06 1.26 4.19 -3.82 -0.02 1.25 16 5 N -0.53 -11.48 3.75 -236.07 -0.89 -12.36 16 6 C 0.17 4.61 4.45 -4.97 -0.02 4.59 16 7 C -0.51 -14.91 8.26 -34.44 -0.28 -15.20 16 8 H 0.06 1.70 7.08 -52.49 -0.37 1.33 16 9 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 10 N -0.89 -28.33 13.29 55.43 0.74 -27.59 16 11 Si 0.89 22.75 29.54 -169.99 -5.02 17.73 16 12 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 13 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 14 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 15 C 0.07 1.33 4.71 -3.82 -0.02 1.31 16 16 C -0.11 -1.87 2.74 -90.63 -0.25 -2.12 16 17 H 0.12 2.13 8.04 -51.93 -0.42 1.71 16 18 C -0.13 -1.39 6.71 -25.10 -0.17 -1.56 16 19 C 0.11 1.13 7.35 -3.12 -0.02 1.11 16 20 N -0.64 -9.40 3.33 -180.30 -0.60 -10.00 16 21 C 0.10 1.21 11.14 59.84 0.67 1.88 16 22 C 0.51 9.85 6.86 -10.86 -0.07 9.77 16 23 O -0.48 -12.17 14.40 5.55 0.08 -12.09 16 24 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 26 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.06 0.86 6.41 -51.93 -0.33 0.52 16 28 H 0.07 1.26 7.64 -51.93 -0.40 0.86 16 29 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.09 1.95 6.39 -51.93 -0.33 1.62 16 32 H 0.01 0.28 8.05 -51.93 -0.42 -0.14 16 33 H -0.02 -0.67 8.14 -51.93 -0.42 -1.09 16 34 H 0.08 2.37 4.06 -51.93 -0.21 2.16 16 35 H 0.26 7.81 8.31 -40.82 -0.34 7.47 16 36 H 0.02 0.42 7.70 -51.93 -0.40 0.02 16 37 H 0.07 1.04 5.55 -51.93 -0.29 0.75 16 38 H 0.09 0.79 7.48 -51.93 -0.39 0.40 16 39 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 40 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.08 1.23 7.53 -51.93 -0.39 0.84 16 43 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 342.57 15.07 5.16 5.16 Total: -1.00 -35.05 342.57 -8.13 -43.18 By element: Atomic # 1 Polarization: 6.12 SS G_CDS: -7.73 Total: -1.61 kcal Atomic # 6 Polarization: -2.55 SS G_CDS: 0.13 Total: -2.42 kcal Atomic # 7 Polarization: -49.21 SS G_CDS: -0.75 Total: -49.96 kcal Atomic # 8 Polarization: -12.17 SS G_CDS: 0.08 Total: -12.09 kcal Atomic # 14 Polarization: 22.75 SS G_CDS: -5.02 Total: 17.73 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -35.05 -8.13 -43.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692720413.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.170 kcal (2) G-P(sol) polarization free energy of solvation -35.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds