Wall clock time and date at job start Mon Mar 30 2020 05:00:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46903 * 110.99667 * 2 1 4 4 C 1.53788 * 113.61260 * 204.99659 * 3 2 1 5 5 C 1.53780 * 87.08216 * 220.02502 * 4 3 2 6 6 C 1.50703 * 113.61258 * 270.88739 * 5 4 3 7 7 O 1.21284 * 119.99611 * 355.48497 * 6 5 4 8 8 N 1.34779 * 120.00140 * 175.48718 * 6 5 4 9 9 C 1.46494 * 120.00044 * 185.48467 * 8 6 5 10 10 C 1.50697 * 109.47261 * 90.00041 * 9 8 6 11 11 H 1.07998 * 120.00021 * 359.97438 * 10 9 8 12 12 C 1.37880 * 119.99859 * 180.02562 * 10 9 8 13 13 N 1.31517 * 119.99749 * 180.02562 * 12 10 9 14 14 Si 1.86801 * 120.00383 * 359.97438 * 12 10 9 15 15 H 1.48504 * 109.47060 * 89.99869 * 14 12 10 16 16 H 1.48491 * 109.47212 * 210.00098 * 14 12 10 17 17 H 1.48496 * 109.46646 * 330.00185 * 14 12 10 18 18 C 1.46497 * 120.00002 * 5.48617 * 8 6 5 19 19 C 1.52994 * 109.47233 * 96.83479 * 18 8 6 20 20 C 1.53001 * 109.47227 * 174.09986 * 19 18 8 21 21 C 1.52997 * 109.47585 * 294.09912 * 19 18 8 22 22 C 1.53784 * 113.61052 * 107.50428 * 3 2 1 23 23 H 1.09010 * 109.46974 * 59.99856 * 1 2 3 24 24 H 1.08996 * 109.47103 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47249 * 299.99943 * 1 2 3 26 26 H 1.00905 * 111.00224 * 236.05181 * 2 1 3 27 27 H 1.08990 * 112.91341 * 336.25367 * 3 2 1 28 28 H 1.09001 * 113.61209 * 105.47153 * 4 3 2 29 29 H 1.09004 * 113.61440 * 334.57233 * 4 3 2 30 30 H 1.08993 * 113.61738 * 139.98364 * 5 4 3 31 31 H 1.08998 * 109.47340 * 210.00097 * 9 8 6 32 32 H 1.09004 * 109.47195 * 329.99925 * 9 8 6 33 33 H 0.96993 * 119.99921 * 180.02562 * 13 12 10 34 34 H 1.08996 * 109.47412 * 216.84256 * 18 8 6 35 35 H 1.09008 * 109.46895 * 336.83729 * 18 8 6 36 36 H 1.09004 * 109.47069 * 54.10367 * 19 18 8 37 37 H 1.09001 * 109.47255 * 60.00070 * 20 19 18 38 38 H 1.08998 * 109.47431 * 180.02562 * 20 19 18 39 39 H 1.09001 * 109.47449 * 300.00752 * 20 19 18 40 40 H 1.08999 * 109.47743 * 304.53661 * 21 19 18 41 41 H 1.09004 * 109.46797 * 64.53976 * 21 19 18 42 42 H 1.08998 * 109.47619 * 184.53315 * 21 19 18 43 43 H 1.08997 * 113.61430 * 25.43170 * 22 3 2 44 44 H 1.08995 * 113.61363 * 254.52513 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 3.4084 1.4890 -0.5954 5 6 3.7137 2.4925 0.5291 6 6 3.3871 3.9192 0.1701 7 8 3.0061 4.1909 -0.9489 8 7 3.5183 4.8932 1.0924 9 6 3.0878 6.2586 0.7821 10 6 1.6427 6.4308 1.1731 11 1 1.0991 5.6055 1.6087 12 6 1.0141 7.6417 0.9736 13 7 -0.2470 7.7920 1.3153 14 14 1.9540 9.0690 0.2195 15 1 1.8085 9.0320 -1.2580 16 1 1.4098 10.3494 0.7385 17 1 3.3908 8.9601 0.5783 18 6 4.0916 4.5864 2.4052 19 6 5.5796 4.9421 2.4076 20 6 6.1450 4.7610 3.8178 21 6 6.3253 4.0236 1.4375 22 6 2.6117 1.7947 1.3439 23 1 -0.3633 0.5139 -0.8901 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8306 -0.5261 -0.7814 27 1 1.2895 2.0969 -0.4043 28 1 3.4270 1.9306 -1.5918 29 1 3.9884 0.5684 -0.5285 30 1 4.7101 2.3799 0.9562 31 1 3.7014 6.9681 1.3373 32 1 3.1992 6.4407 -0.2869 33 1 -0.6893 8.6437 1.1747 34 1 3.5778 5.1676 3.1708 35 1 3.9718 3.5234 2.6145 36 1 5.7059 5.9790 2.0960 37 1 6.0188 3.7242 4.1295 38 1 7.2050 5.0148 3.8197 39 1 5.6138 5.4153 4.5090 40 1 6.1333 2.9836 1.7014 41 1 5.9785 4.2105 0.4211 42 1 7.3952 4.2223 1.4986 43 1 2.9739 0.9578 1.9409 44 1 1.9873 2.4831 1.9131 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000693604715.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:00:33 Heat of formation + Delta-G solvation = -44.809506 kcal Electronic energy + Delta-G solvation = -21949.041355 eV Core-core repulsion = 18900.801773 eV Total energy + Delta-G solvation = -3048.239582 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.70295 -39.08791 -37.69307 -35.51295 -34.87239 -34.20085 -30.49404 -28.24476 -27.46121 -26.92230 -26.57004 -25.26181 -23.61490 -21.76938 -21.00857 -19.31195 -19.05938 -18.07860 -17.20046 -17.04611 -16.41800 -16.26196 -15.68709 -15.62773 -15.48382 -14.80289 -14.54598 -14.43094 -13.96658 -13.88695 -13.49235 -13.38917 -13.27698 -12.98893 -12.84995 -12.81900 -12.66631 -12.54917 -12.32819 -12.25147 -11.92374 -11.79410 -11.74258 -11.60248 -11.41947 -11.18364 -10.86939 -10.56746 -9.51087 -9.37521 -8.37949 -6.42765 1.28068 1.31803 1.40596 1.74699 2.26530 2.29030 2.96164 3.27115 3.55337 3.56405 3.65735 3.80593 3.94241 4.05336 4.21635 4.29266 4.45355 4.47958 4.54739 4.59468 4.67734 4.76728 4.80395 4.85283 4.88935 4.91959 4.97331 4.99078 5.02104 5.08867 5.10495 5.11948 5.26588 5.29989 5.41613 5.45620 5.51346 5.66024 5.98651 6.21035 6.46343 6.58186 6.71907 7.17989 7.41657 8.78956 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.013474 B = 0.007239 C = 0.005368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2077.625400 B = 3866.829652 C = 5214.472948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.671 5.671 3 C 0.052 3.948 4 C -0.110 4.110 5 C -0.137 4.137 6 C 0.519 3.481 7 O -0.598 6.598 8 N -0.593 5.593 9 C 0.226 3.774 10 C -0.535 4.535 11 H 0.028 0.972 12 C 0.013 3.987 13 N -0.943 5.943 14 Si 0.945 3.055 15 H -0.277 1.277 16 H -0.272 1.272 17 H -0.240 1.240 18 C 0.109 3.891 19 C -0.113 4.113 20 C -0.136 4.136 21 C -0.145 4.145 22 C -0.100 4.100 23 H 0.011 0.989 24 H 0.092 0.908 25 H 0.051 0.949 26 H 0.352 0.648 27 H 0.031 0.969 28 H 0.058 0.942 29 H 0.131 0.869 30 H 0.139 0.861 31 H 0.045 0.955 32 H 0.015 0.985 33 H 0.269 0.731 34 H 0.064 0.936 35 H 0.099 0.901 36 H 0.054 0.946 37 H 0.073 0.927 38 H 0.069 0.931 39 H 0.052 0.948 40 H 0.077 0.923 41 H 0.029 0.971 42 H 0.071 0.929 43 H 0.130 0.870 44 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.738 -14.242 2.907 20.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.302 5.302 3 C -0.058 4.058 4 C -0.148 4.148 5 C -0.158 4.158 6 C 0.309 3.691 7 O -0.479 6.479 8 N -0.323 5.323 9 C 0.104 3.896 10 C -0.574 4.574 11 H 0.047 0.953 12 C -0.185 4.185 13 N -0.584 5.584 14 Si 0.768 3.232 15 H -0.203 1.203 16 H -0.197 1.197 17 H -0.164 1.164 18 C -0.013 4.013 19 C -0.133 4.133 20 C -0.194 4.194 21 C -0.202 4.202 22 C -0.139 4.139 23 H 0.030 0.970 24 H 0.111 0.889 25 H 0.070 0.930 26 H 0.171 0.829 27 H 0.049 0.951 28 H 0.076 0.924 29 H 0.150 0.850 30 H 0.157 0.843 31 H 0.063 0.937 32 H 0.034 0.966 33 H 0.078 0.922 34 H 0.083 0.917 35 H 0.118 0.882 36 H 0.072 0.928 37 H 0.092 0.908 38 H 0.088 0.912 39 H 0.071 0.929 40 H 0.096 0.904 41 H 0.048 0.952 42 H 0.090 0.910 43 H 0.148 0.852 44 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 13.432 -14.034 3.041 19.663 hybrid contribution -0.987 1.637 -1.408 2.374 sum 12.445 -12.397 1.633 17.642 Atomic orbital electron populations 1.22269 0.87938 1.02715 0.99641 1.60611 1.07958 1.12039 1.49579 1.22959 0.95253 0.89786 0.97822 1.23089 0.95304 0.99130 0.97318 1.22458 1.03115 0.89259 1.00965 1.20788 0.76330 0.88072 0.83958 1.90600 1.49393 1.84376 1.23572 1.47863 1.60130 1.09150 1.15109 1.19244 0.93516 0.81082 0.95791 1.21543 0.96488 0.97878 1.41464 0.95347 1.25820 0.95703 1.01691 0.95312 1.70044 1.12473 1.26440 1.49397 0.85752 0.80438 0.78272 0.78744 1.20256 1.19697 1.16366 1.21889 0.93597 1.02466 0.83367 1.21522 0.93754 0.99989 0.98012 1.21721 1.01111 1.02874 0.93702 1.21940 1.00577 0.99932 0.97707 1.23005 0.95242 0.99528 0.96096 0.97000 0.88931 0.93008 0.82901 0.95089 0.92367 0.85050 0.84348 0.93746 0.96643 0.92242 0.91726 0.88245 0.92782 0.90841 0.91215 0.92892 0.90388 0.95195 0.90966 0.85222 0.93864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.57 10.54 127.69 1.35 1.92 16 2 N -0.67 -15.70 6.91 -511.85 -3.54 -19.24 16 3 C 0.05 1.55 3.84 45.44 0.17 1.72 16 4 C -0.11 -2.87 7.04 31.12 0.22 -2.65 16 5 C -0.14 -3.91 2.74 -11.01 -0.03 -3.94 16 6 C 0.52 21.55 5.68 87.66 0.50 22.05 16 7 O -0.60 -30.76 15.41 -3.04 -0.05 -30.81 16 8 N -0.59 -24.77 2.26 -826.18 -1.87 -26.64 16 9 C 0.23 11.43 4.29 85.63 0.37 11.79 16 10 C -0.54 -32.29 9.94 25.60 0.25 -32.03 16 11 H 0.03 1.91 8.06 -2.91 -0.02 1.89 16 12 C 0.01 0.78 5.47 84.65 0.46 1.24 16 13 N -0.94 -60.55 13.96 21.45 0.30 -60.25 16 14 Si 0.95 45.59 27.47 68.60 1.88 47.48 16 15 H -0.28 -13.44 7.11 99.48 0.71 -12.73 16 16 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 17 H -0.24 -10.52 6.54 99.48 0.65 -9.87 16 18 C 0.11 3.40 4.86 86.38 0.42 3.82 16 19 C -0.11 -2.78 3.11 -10.80 -0.03 -2.82 16 20 C -0.14 -2.44 9.19 71.98 0.66 -1.78 16 21 C -0.14 -3.06 7.69 71.98 0.55 -2.51 16 22 C -0.10 -2.76 6.60 31.12 0.21 -2.56 16 23 H 0.01 0.30 8.13 -2.38 -0.02 0.28 16 24 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 25 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 26 H 0.35 6.65 8.63 -89.69 -0.77 5.87 16 27 H 0.03 1.23 7.86 -2.39 -0.02 1.21 16 28 H 0.06 1.81 7.39 -2.39 -0.02 1.79 16 29 H 0.13 2.33 8.14 -2.38 -0.02 2.31 16 30 H 0.14 2.99 4.61 -2.39 -0.01 2.98 16 31 H 0.04 2.09 6.98 -2.39 -0.02 2.08 16 32 H 0.02 0.85 6.78 -2.38 -0.02 0.83 16 33 H 0.27 16.00 8.31 -92.71 -0.77 15.23 16 34 H 0.06 2.21 8.12 -2.39 -0.02 2.19 16 35 H 0.10 2.55 5.68 -2.38 -0.01 2.54 16 36 H 0.05 1.55 7.99 -2.38 -0.02 1.53 16 37 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.08 1.29 6.30 -2.39 -0.02 1.28 16 41 H 0.03 0.79 6.97 -2.38 -0.02 0.77 16 42 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 43 H 0.13 2.69 8.14 -2.39 -0.02 2.68 16 44 H 0.04 1.44 8.08 -2.39 -0.02 1.43 16 Total: -1.00 -77.40 342.79 1.97 -75.42 By element: Atomic # 1 Polarization: 19.64 SS G_CDS: 0.14 Total: 19.78 kcal Atomic # 6 Polarization: -10.84 SS G_CDS: 5.10 Total: -5.74 kcal Atomic # 7 Polarization: -101.03 SS G_CDS: -5.11 Total: -106.13 kcal Atomic # 8 Polarization: -30.76 SS G_CDS: -0.05 Total: -30.81 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 1.88 Total: 47.48 kcal Total: -77.40 1.97 -75.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693604715.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.615 kcal (2) G-P(sol) polarization free energy of solvation -77.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds