Wall clock time and date at job start Mon Mar 30 2020 05:00:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47245 * 2 1 4 4 C 1.53001 * 109.47365 * 120.00119 * 2 1 3 5 5 N 1.46899 * 109.47221 * 178.09586 * 4 2 1 6 6 C 1.46904 * 110.99709 * 282.12842 * 5 4 2 7 7 C 1.50698 * 109.47495 * 79.36439 * 6 5 4 8 8 H 1.08003 * 119.99626 * 359.09246 * 7 6 5 9 9 C 1.37878 * 120.00392 * 179.10086 * 7 6 5 10 10 N 1.31508 * 119.99718 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 120.00028 * 179.97438 * 9 7 6 12 12 H 1.48497 * 109.47089 * 269.99670 * 11 9 7 13 13 H 1.48503 * 109.46829 * 150.00009 * 11 9 7 14 14 H 1.48494 * 109.47015 * 29.99994 * 11 9 7 15 15 C 1.46900 * 111.00300 * 158.17542 * 5 4 2 16 16 C 1.52993 * 109.47226 * 211.89413 * 15 5 4 17 17 C 1.52994 * 110.43796 * 59.14813 * 16 15 5 18 18 C 1.54631 * 110.48866 * 181.69412 * 16 15 5 19 19 C 1.54478 * 101.76812 * 93.87407 * 18 16 15 20 20 N 1.46770 * 105.47086 * 25.42062 * 19 18 16 21 21 C 1.34423 * 111.29894 * 342.98037 * 20 19 18 22 22 O 1.21274 * 124.93770 * 180.45428 * 21 20 19 23 23 H 1.09000 * 109.47442 * 299.99809 * 1 2 3 24 24 H 1.09000 * 109.47390 * 60.00133 * 1 2 3 25 25 H 1.09005 * 109.46728 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47442 * 240.00190 * 2 1 3 27 27 H 1.09004 * 109.47111 * 303.91168 * 3 2 1 28 28 H 1.09006 * 109.46968 * 63.90329 * 3 2 1 29 29 H 1.08994 * 109.47723 * 183.91131 * 3 2 1 30 30 H 1.08998 * 109.47137 * 58.09236 * 4 2 1 31 31 H 1.08996 * 109.47120 * 298.09047 * 4 2 1 32 32 H 1.09000 * 109.46993 * 319.35680 * 6 5 4 33 33 H 1.08997 * 109.46928 * 199.36182 * 6 5 4 34 34 H 0.96998 * 120.00381 * 0.02562 * 10 9 7 35 35 H 1.09003 * 109.46588 * 331.89462 * 15 5 4 36 36 H 1.08998 * 109.47319 * 91.88783 * 15 5 4 37 37 H 1.09001 * 109.47440 * 64.74760 * 17 16 15 38 38 H 1.09000 * 109.47248 * 184.74666 * 17 16 15 39 39 H 1.09002 * 109.47544 * 304.75120 * 17 16 15 40 40 H 1.08994 * 110.97041 * 211.99744 * 18 16 15 41 41 H 1.09003 * 110.96208 * 335.72202 * 18 16 15 42 42 H 1.08993 * 110.24396 * 144.41612 * 19 18 16 43 43 H 1.08998 * 110.24832 * 266.42487 * 19 18 16 44 44 H 0.96996 * 124.34802 * 162.98257 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5083 -0.7612 1.2264 6 6 3.9924 -1.8022 0.3099 7 6 3.9193 -1.2969 -1.1080 8 1 3.5364 -0.3073 -1.3095 9 6 4.3410 -2.0979 -2.1480 10 7 4.8075 -3.3027 -1.9026 11 14 4.2497 -1.4717 -3.9056 12 1 2.9331 -1.8306 -4.4912 13 1 5.3342 -2.0914 -4.7088 14 1 4.4092 0.0046 -3.9139 15 6 4.0508 -0.9558 2.5776 16 6 5.3988 -0.2415 2.6937 17 6 5.2368 1.2539 2.4141 18 6 6.0117 -0.4667 4.0954 19 6 6.9170 -1.6941 3.8499 20 7 7.2462 -1.6581 2.4201 21 6 6.4060 -0.8542 1.7457 22 8 6.4486 -0.6505 0.5509 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.6205 1.9762 -0.8529 28 1 1.7349 1.9358 0.9230 29 1 3.1277 1.4434 -0.0701 30 1 1.6491 -1.7386 1.2665 31 1 1.7050 -0.1881 2.1389 32 1 3.3716 -2.6925 0.4108 33 1 5.0253 -2.0499 0.5544 34 1 4.8546 -3.6280 -0.9900 35 1 3.3569 -0.5438 3.3104 36 1 4.1866 -2.0209 2.7648 37 1 4.6106 1.7021 3.1855 38 1 6.2162 1.7324 2.4177 39 1 4.7682 1.3928 1.4398 40 1 6.6003 0.3961 4.4070 41 1 5.2369 -0.6931 4.8280 42 1 7.8250 -1.6187 4.4480 43 1 6.3811 -2.6123 4.0904 44 1 7.9762 -2.1509 2.0140 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000698276346.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:00:05 Heat of formation + Delta-G solvation = -34.461835 kcal Electronic energy + Delta-G solvation = -22822.037377 eV Core-core repulsion = 19774.246503 eV Total energy + Delta-G solvation = -3047.790873 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.33516 -37.25365 -35.85932 -34.09152 -32.92692 -31.77727 -28.43239 -26.89243 -26.42764 -26.15122 -24.45031 -23.13018 -21.59824 -20.96705 -19.09329 -18.39270 -16.76037 -16.65807 -15.72527 -15.19954 -14.64792 -14.08349 -13.91424 -13.72880 -13.53221 -13.28136 -13.14643 -12.78439 -12.50181 -12.35314 -12.02985 -11.82160 -11.60978 -11.57106 -11.23776 -11.09650 -10.93894 -10.75367 -10.65232 -10.54273 -10.24647 -10.08998 -9.96292 -9.68127 -9.38360 -8.90802 -8.58920 -8.40767 -8.03899 -7.17694 -6.07522 -3.70550 3.35669 3.55769 3.62918 3.77037 3.79009 4.49332 4.66740 4.74349 4.89125 5.04286 5.33245 5.46925 5.57076 5.60627 5.63921 5.67524 5.73865 5.80736 5.86230 5.97451 5.97508 6.08232 6.14408 6.25334 6.26195 6.29813 6.35532 6.44594 6.54263 6.69437 6.81821 6.85085 7.18275 7.20575 7.25740 7.32714 7.44400 7.55076 8.06212 8.22689 8.55640 8.86271 8.98003 9.15325 9.95319 11.30043 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.015339 B = 0.008849 C = 0.006495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1824.920247 B = 3163.541922 C = 4309.663555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.107 4.107 3 C -0.127 4.127 4 C 0.079 3.921 5 N -0.518 5.518 6 C 0.179 3.821 7 C -0.553 4.553 8 H 0.065 0.935 9 C 0.011 3.989 10 N -0.923 5.923 11 Si 1.067 2.933 12 H -0.293 1.293 13 H -0.288 1.288 14 H -0.289 1.289 15 C 0.074 3.926 16 C -0.082 4.082 17 C -0.118 4.118 18 C -0.129 4.129 19 C 0.106 3.894 20 N -0.749 5.749 21 C 0.516 3.484 22 O -0.465 6.465 23 H 0.040 0.960 24 H 0.048 0.952 25 H 0.045 0.955 26 H 0.113 0.887 27 H 0.034 0.966 28 H 0.033 0.967 29 H 0.072 0.928 30 H 0.020 0.980 31 H 0.046 0.954 32 H -0.032 1.032 33 H 0.034 0.966 34 H 0.261 0.739 35 H 0.066 0.934 36 H 0.028 0.972 37 H 0.051 0.949 38 H 0.043 0.957 39 H 0.087 0.913 40 H 0.080 0.920 41 H 0.083 0.917 42 H 0.070 0.930 43 H 0.062 0.938 44 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.502 6.012 13.854 15.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.126 4.126 3 C -0.184 4.184 4 C -0.050 4.050 5 N -0.242 5.242 6 C 0.054 3.946 7 C -0.592 4.592 8 H 0.083 0.917 9 C -0.191 4.191 10 N -0.562 5.562 11 Si 0.897 3.103 12 H -0.220 1.220 13 H -0.214 1.214 14 H -0.215 1.215 15 C -0.055 4.055 16 C -0.086 4.086 17 C -0.176 4.176 18 C -0.168 4.168 19 C -0.019 4.019 20 N -0.408 5.408 21 C 0.300 3.700 22 O -0.335 6.335 23 H 0.059 0.941 24 H 0.067 0.933 25 H 0.065 0.935 26 H 0.131 0.869 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.091 0.909 30 H 0.038 0.962 31 H 0.065 0.935 32 H -0.015 1.015 33 H 0.052 0.948 34 H 0.072 0.928 35 H 0.084 0.916 36 H 0.046 0.954 37 H 0.070 0.930 38 H 0.062 0.938 39 H 0.106 0.894 40 H 0.098 0.902 41 H 0.102 0.898 42 H 0.089 0.911 43 H 0.080 0.920 44 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -0.114 6.260 11.458 13.057 hybrid contribution -0.237 -0.828 1.976 2.155 sum -0.351 5.433 13.434 14.495 Atomic orbital electron populations 1.21830 0.97209 1.00627 1.00391 1.21448 0.92773 0.97067 1.01282 1.21634 1.02828 0.95275 0.98711 1.22016 0.88383 0.97514 0.97042 1.61955 1.06559 1.50454 1.05200 1.20166 0.94800 0.86865 0.92724 1.21954 1.43668 1.03064 0.90475 0.91676 1.25620 0.94257 0.94855 1.04401 1.70735 1.44587 1.17890 1.22951 0.83576 0.76187 0.75152 0.75417 1.21994 1.21444 1.21468 1.21906 0.93608 0.96945 0.93082 1.21332 0.95455 0.98449 0.93397 1.21538 1.00710 0.91454 1.03876 1.22736 0.99097 0.97897 0.97026 1.21889 0.99027 0.98545 0.82427 1.46273 1.35003 1.50455 1.09115 1.20632 0.81838 0.79222 0.88315 1.90944 1.69832 1.59726 1.12961 0.94050 0.93271 0.93536 0.86926 0.94658 0.94834 0.90890 0.96216 0.93525 1.01475 0.94837 0.92848 0.91603 0.95357 0.93017 0.93834 0.89394 0.90176 0.89795 0.91129 0.91993 0.75803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.27 9.19 37.16 0.34 -1.93 16 2 C -0.11 -2.06 2.44 -90.62 -0.22 -2.28 16 3 C -0.13 -2.29 8.62 37.16 0.32 -1.97 16 4 C 0.08 1.51 4.43 -3.82 -0.02 1.49 16 5 N -0.52 -10.88 2.79 -236.08 -0.66 -11.54 16 6 C 0.18 4.69 2.91 -4.98 -0.01 4.68 16 7 C -0.55 -15.81 7.16 -34.44 -0.25 -16.05 16 8 H 0.07 1.85 5.07 -52.48 -0.27 1.59 16 9 C 0.01 0.32 5.46 -17.82 -0.10 0.22 16 10 N -0.92 -29.44 13.65 55.43 0.76 -28.68 16 11 Si 1.07 27.09 29.90 -169.99 -5.08 22.01 16 12 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 13 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 14 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 15 C 0.07 1.28 4.18 -3.83 -0.02 1.27 16 16 C -0.08 -1.30 0.70 -154.52 -0.11 -1.41 16 17 C -0.12 -1.84 8.32 37.15 0.31 -1.53 16 18 C -0.13 -1.44 6.23 -25.10 -0.16 -1.60 16 19 C 0.11 1.19 7.78 -3.12 -0.02 1.17 16 20 N -0.75 -11.61 6.24 -59.20 -0.37 -11.98 16 21 C 0.52 10.10 5.50 -10.86 -0.06 10.04 16 22 O -0.47 -11.78 15.23 5.56 0.08 -11.70 16 23 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 25 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.11 2.63 4.99 -51.93 -0.26 2.37 16 27 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.07 1.50 6.59 -51.93 -0.34 1.16 16 30 H 0.02 0.40 7.64 -51.93 -0.40 0.01 16 31 H 0.05 0.78 7.45 -51.93 -0.39 0.39 16 32 H -0.03 -0.92 7.53 -51.93 -0.39 -1.31 16 33 H 0.03 0.94 4.35 -51.93 -0.23 0.72 16 34 H 0.26 8.40 7.22 -40.82 -0.29 8.11 16 35 H 0.07 0.97 7.35 -51.93 -0.38 0.59 16 36 H 0.03 0.51 7.81 -51.93 -0.41 0.11 16 37 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 38 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.09 1.66 6.87 -51.93 -0.36 1.31 16 40 H 0.08 0.79 7.91 -51.93 -0.41 0.37 16 41 H 0.08 0.77 7.90 -51.93 -0.41 0.36 16 42 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 44 H 0.40 5.91 8.96 -40.82 -0.37 5.54 16 LS Contribution 332.97 15.07 5.02 5.02 Total: -1.00 -34.12 332.97 -7.74 -41.86 By element: Atomic # 1 Polarization: 10.41 SS G_CDS: -7.49 Total: 2.92 kcal Atomic # 6 Polarization: -7.91 SS G_CDS: 0.01 Total: -7.90 kcal Atomic # 7 Polarization: -51.93 SS G_CDS: -0.27 Total: -52.20 kcal Atomic # 8 Polarization: -11.78 SS G_CDS: 0.08 Total: -11.70 kcal Atomic # 14 Polarization: 27.09 SS G_CDS: -5.08 Total: 22.01 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -34.12 -7.74 -41.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000698276346.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.394 kcal (2) G-P(sol) polarization free energy of solvation -34.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds