Wall clock time and date at job start Mon Mar 30 2020 05:00:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47245 * 2 1 4 4 C 1.53001 * 109.47365 * 120.00119 * 2 1 3 5 5 N 1.46899 * 109.47221 * 178.09586 * 4 2 1 6 6 C 1.46904 * 110.99709 * 282.12842 * 5 4 2 7 7 C 1.50698 * 109.47495 * 79.36439 * 6 5 4 8 8 H 1.08003 * 119.99626 * 359.09246 * 7 6 5 9 9 C 1.37878 * 120.00392 * 179.10086 * 7 6 5 10 10 N 1.31508 * 119.99718 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 120.00028 * 179.97438 * 9 7 6 12 12 H 1.48497 * 109.47089 * 269.99670 * 11 9 7 13 13 H 1.48503 * 109.46829 * 150.00009 * 11 9 7 14 14 H 1.48494 * 109.47015 * 29.99994 * 11 9 7 15 15 C 1.46900 * 111.00300 * 158.17542 * 5 4 2 16 16 C 1.52993 * 109.47226 * 211.89413 * 15 5 4 17 17 C 1.52994 * 110.43796 * 59.14813 * 16 15 5 18 18 C 1.54631 * 110.48866 * 181.69412 * 16 15 5 19 19 C 1.54478 * 101.76812 * 93.87407 * 18 16 15 20 20 N 1.46770 * 105.47086 * 25.42062 * 19 18 16 21 21 C 1.34423 * 111.29894 * 342.98037 * 20 19 18 22 22 O 1.21274 * 124.93770 * 180.45428 * 21 20 19 23 23 H 1.09000 * 109.47442 * 299.99809 * 1 2 3 24 24 H 1.09000 * 109.47390 * 60.00133 * 1 2 3 25 25 H 1.09005 * 109.46728 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47442 * 240.00190 * 2 1 3 27 27 H 1.09004 * 109.47111 * 303.91168 * 3 2 1 28 28 H 1.09006 * 109.46968 * 63.90329 * 3 2 1 29 29 H 1.08994 * 109.47723 * 183.91131 * 3 2 1 30 30 H 1.08998 * 109.47137 * 58.09236 * 4 2 1 31 31 H 1.08996 * 109.47120 * 298.09047 * 4 2 1 32 32 H 1.09000 * 109.46993 * 319.35680 * 6 5 4 33 33 H 1.08997 * 109.46928 * 199.36182 * 6 5 4 34 34 H 0.96998 * 120.00381 * 0.02562 * 10 9 7 35 35 H 1.09003 * 109.46588 * 331.89462 * 15 5 4 36 36 H 1.08998 * 109.47319 * 91.88783 * 15 5 4 37 37 H 1.09001 * 109.47440 * 64.74760 * 17 16 15 38 38 H 1.09000 * 109.47248 * 184.74666 * 17 16 15 39 39 H 1.09002 * 109.47544 * 304.75120 * 17 16 15 40 40 H 1.08994 * 110.97041 * 211.99744 * 18 16 15 41 41 H 1.09003 * 110.96208 * 335.72202 * 18 16 15 42 42 H 1.08993 * 110.24396 * 144.41612 * 19 18 16 43 43 H 1.08998 * 110.24832 * 266.42487 * 19 18 16 44 44 H 0.96996 * 124.34802 * 162.98257 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5083 -0.7612 1.2264 6 6 3.9924 -1.8022 0.3099 7 6 3.9193 -1.2969 -1.1080 8 1 3.5364 -0.3073 -1.3095 9 6 4.3410 -2.0979 -2.1480 10 7 4.8075 -3.3027 -1.9026 11 14 4.2497 -1.4717 -3.9056 12 1 2.9331 -1.8306 -4.4912 13 1 5.3342 -2.0914 -4.7088 14 1 4.4092 0.0046 -3.9139 15 6 4.0508 -0.9558 2.5776 16 6 5.3988 -0.2415 2.6937 17 6 5.2368 1.2539 2.4141 18 6 6.0117 -0.4667 4.0954 19 6 6.9170 -1.6941 3.8499 20 7 7.2462 -1.6581 2.4201 21 6 6.4060 -0.8542 1.7457 22 8 6.4486 -0.6505 0.5509 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.6205 1.9762 -0.8529 28 1 1.7349 1.9358 0.9230 29 1 3.1277 1.4434 -0.0701 30 1 1.6491 -1.7386 1.2665 31 1 1.7050 -0.1881 2.1389 32 1 3.3716 -2.6925 0.4108 33 1 5.0253 -2.0499 0.5544 34 1 4.8546 -3.6280 -0.9900 35 1 3.3569 -0.5438 3.3104 36 1 4.1866 -2.0209 2.7648 37 1 4.6106 1.7021 3.1855 38 1 6.2162 1.7324 2.4177 39 1 4.7682 1.3928 1.4398 40 1 6.6003 0.3961 4.4070 41 1 5.2369 -0.6931 4.8280 42 1 7.8250 -1.6187 4.4480 43 1 6.3811 -2.6123 4.0904 44 1 7.9762 -2.1509 2.0140 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000698276346.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:00:04 Heat of formation + Delta-G solvation = -59.531518 kcal Electronic energy + Delta-G solvation = -22823.124480 eV Core-core repulsion = 19774.246503 eV Total energy + Delta-G solvation = -3048.877976 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.67718 -38.87054 -37.33273 -35.53151 -34.94180 -33.35772 -29.55627 -28.83029 -27.85059 -27.57369 -25.79040 -25.06743 -22.80425 -22.61584 -20.65818 -19.72078 -18.87501 -18.06164 -16.95371 -16.83295 -16.13338 -15.64070 -15.53544 -15.43993 -15.15647 -14.71816 -14.46708 -14.40231 -14.05027 -13.58855 -13.51468 -13.14659 -12.98553 -12.88433 -12.85472 -12.66156 -12.48260 -12.40331 -12.11718 -12.00122 -11.94875 -11.83427 -11.54402 -11.22492 -11.01529 -10.57333 -10.42691 -10.31703 -9.87333 -8.93465 -8.45303 -6.07949 1.46493 1.58581 1.74024 1.88446 2.59478 2.60820 3.15381 3.33550 3.51882 3.76364 3.95437 4.11899 4.19775 4.26217 4.34107 4.44145 4.52224 4.57483 4.68914 4.73196 4.77996 4.81803 4.91380 4.92120 5.00292 5.01796 5.07316 5.12854 5.16115 5.21859 5.24299 5.27356 5.43837 5.53975 5.75712 5.83251 6.07346 6.12760 6.20009 6.23950 6.59381 6.64926 6.84711 7.55364 7.65340 8.90283 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.015339 B = 0.008849 C = 0.006495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1824.920247 B = 3163.541922 C = 4309.663555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.110 4.110 3 C -0.117 4.117 4 C 0.078 3.922 5 N -0.521 5.521 6 C 0.199 3.801 7 C -0.541 4.541 8 H 0.063 0.937 9 C -0.051 4.051 10 N -0.953 5.953 11 Si 1.109 2.891 12 H -0.272 1.272 13 H -0.291 1.291 14 H -0.276 1.276 15 C 0.070 3.930 16 C -0.083 4.083 17 C -0.112 4.112 18 C -0.114 4.114 19 C 0.099 3.901 20 N -0.747 5.747 21 C 0.499 3.501 22 O -0.542 6.542 23 H 0.069 0.931 24 H 0.057 0.943 25 H 0.041 0.959 26 H 0.062 0.938 27 H 0.043 0.957 28 H 0.061 0.939 29 H 0.039 0.961 30 H 0.000 1.000 31 H 0.086 0.914 32 H -0.070 1.070 33 H 0.016 0.984 34 H 0.244 0.756 35 H 0.106 0.894 36 H 0.017 0.983 37 H 0.086 0.914 38 H 0.046 0.954 39 H 0.047 0.953 40 H 0.102 0.898 41 H 0.115 0.885 42 H 0.108 0.892 43 H 0.069 0.931 44 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.588 7.938 16.736 18.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.129 4.129 3 C -0.174 4.174 4 C -0.050 4.050 5 N -0.244 5.244 6 C 0.073 3.927 7 C -0.579 4.579 8 H 0.081 0.919 9 C -0.246 4.246 10 N -0.594 5.594 11 Si 0.933 3.067 12 H -0.197 1.197 13 H -0.217 1.217 14 H -0.201 1.201 15 C -0.058 4.058 16 C -0.087 4.087 17 C -0.170 4.170 18 C -0.152 4.152 19 C -0.024 4.024 20 N -0.404 5.404 21 C 0.285 3.715 22 O -0.418 6.418 23 H 0.088 0.912 24 H 0.076 0.924 25 H 0.060 0.940 26 H 0.081 0.919 27 H 0.062 0.938 28 H 0.080 0.920 29 H 0.058 0.942 30 H 0.019 0.981 31 H 0.104 0.896 32 H -0.052 1.052 33 H 0.033 0.967 34 H 0.053 0.947 35 H 0.124 0.876 36 H 0.035 0.965 37 H 0.105 0.895 38 H 0.065 0.935 39 H 0.066 0.934 40 H 0.121 0.879 41 H 0.134 0.866 42 H 0.126 0.874 43 H 0.087 0.913 44 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -1.205 8.184 14.425 16.629 hybrid contribution 0.120 -1.414 1.202 1.860 sum -1.085 6.770 15.627 17.065 Atomic orbital electron populations 1.21734 0.94317 1.00934 1.02192 1.21354 0.95249 0.97212 0.99036 1.21506 1.00576 0.94735 1.00579 1.22119 0.87141 0.97010 0.98759 1.61862 1.07819 1.47923 1.06764 1.19753 0.93105 0.86702 0.93167 1.22263 1.41309 1.02487 0.91879 0.91886 1.27027 0.94134 0.94748 1.08651 1.70875 1.47513 1.19327 1.21652 0.83035 0.76989 0.75319 0.71376 1.19742 1.21723 1.20096 1.22110 0.95215 0.96918 0.91605 1.21410 0.93734 0.98064 0.95508 1.21474 1.01237 0.91472 1.02800 1.22807 0.99694 0.98508 0.94207 1.22271 1.01069 0.99223 0.79879 1.46457 1.33936 1.48823 1.11135 1.21487 0.82694 0.79292 0.88017 1.90886 1.72085 1.62555 1.16239 0.91244 0.92437 0.94028 0.91947 0.93803 0.91967 0.94182 0.98125 0.89586 1.05236 0.96660 0.94743 0.87623 0.96508 0.89505 0.93493 0.93408 0.87909 0.86624 0.87418 0.91265 0.75903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.98 9.19 71.98 0.66 -3.32 16 2 C -0.11 -4.15 2.44 -10.79 -0.03 -4.17 16 3 C -0.12 -4.04 8.62 71.98 0.62 -3.42 16 4 C 0.08 2.91 4.43 86.30 0.38 3.29 16 5 N -0.52 -22.05 2.79 -900.81 -2.52 -24.57 16 6 C 0.20 10.98 2.91 85.56 0.25 11.23 16 7 C -0.54 -32.49 7.16 25.60 0.18 -32.31 16 8 H 0.06 3.75 5.07 -2.91 -0.01 3.74 16 9 C -0.05 -3.20 5.46 84.66 0.46 -2.74 16 10 N -0.95 -64.02 13.65 21.45 0.29 -63.73 16 11 Si 1.11 56.39 29.90 68.60 2.05 58.44 16 12 H -0.27 -12.77 7.11 99.48 0.71 -12.06 16 13 H -0.29 -14.84 7.11 99.48 0.71 -14.13 16 14 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 15 C 0.07 2.31 4.18 86.30 0.36 2.68 16 16 C -0.08 -2.48 0.70 -52.19 -0.04 -2.52 16 17 C -0.11 -3.27 8.32 71.98 0.60 -2.67 16 18 C -0.11 -2.04 6.23 31.65 0.20 -1.84 16 19 C 0.10 1.90 7.78 86.83 0.68 2.58 16 20 N -0.75 -22.95 6.24 -459.81 -2.87 -25.82 16 21 C 0.50 19.92 5.50 87.90 0.48 20.40 16 22 O -0.54 -29.09 15.23 -3.01 -0.05 -29.14 16 23 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 24 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 25 H 0.04 1.25 8.14 -2.38 -0.02 1.24 16 26 H 0.06 3.00 4.99 -2.39 -0.01 2.99 16 27 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 28 H 0.06 1.78 8.14 -2.38 -0.02 1.76 16 29 H 0.04 1.65 6.59 -2.39 -0.02 1.63 16 30 H 0.00 0.02 7.64 -2.39 -0.02 0.00 16 31 H 0.09 2.55 7.45 -2.39 -0.02 2.53 16 32 H -0.07 -4.26 7.53 -2.39 -0.02 -4.28 16 33 H 0.02 0.93 4.35 -2.39 -0.01 0.92 16 34 H 0.24 16.75 7.22 -92.71 -0.67 16.08 16 35 H 0.11 2.64 7.35 -2.39 -0.02 2.62 16 36 H 0.02 0.59 7.81 -2.39 -0.02 0.57 16 37 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 38 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 39 H 0.05 1.79 6.87 -2.39 -0.02 1.78 16 40 H 0.10 1.45 7.91 -2.39 -0.02 1.43 16 41 H 0.12 1.42 7.90 -2.39 -0.02 1.40 16 42 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 43 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 44 H 0.40 12.08 8.96 -92.71 -0.83 11.25 16 Total: -1.00 -82.34 332.97 1.97 -80.36 By element: Atomic # 1 Polarization: 17.00 SS G_CDS: 0.25 Total: 17.25 kcal Atomic # 6 Polarization: -17.62 SS G_CDS: 4.81 Total: -12.81 kcal Atomic # 7 Polarization: -109.02 SS G_CDS: -5.09 Total: -114.11 kcal Atomic # 8 Polarization: -29.09 SS G_CDS: -0.05 Total: -29.14 kcal Atomic # 14 Polarization: 56.39 SS G_CDS: 2.05 Total: 58.44 kcal Total: -82.34 1.97 -80.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000698276346.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.833 kcal (2) G-P(sol) polarization free energy of solvation -82.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds