Wall clock time and date at job start Mon Mar 30 2020 05:06:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47194 * 2 1 4 4 C 1.50698 * 109.47490 * 239.99342 * 2 1 3 5 5 H 1.07996 * 120.00096 * 240.00318 * 4 2 1 6 6 C 1.37885 * 119.99249 * 60.00084 * 4 2 1 7 7 N 1.31507 * 120.00543 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99561 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.47119 * 60.00158 * 8 6 4 10 10 H 1.48492 * 109.47000 * 180.02562 * 8 6 4 11 11 H 1.48504 * 109.47097 * 300.00383 * 8 6 4 12 12 C 1.53005 * 109.46967 * 119.99673 * 2 1 3 13 13 N 1.46502 * 109.47031 * 300.00288 * 12 2 1 14 14 C 1.34781 * 120.00125 * 179.97438 * 13 12 2 15 15 O 1.21277 * 119.99443 * 0.02562 * 14 13 12 16 16 C 1.50698 * 119.99839 * 179.97438 * 14 13 12 17 17 C 1.53004 * 109.46870 * 185.93538 * 16 14 13 18 18 H 1.09000 * 109.47247 * 182.42739 * 17 16 14 19 19 C 1.53000 * 109.47159 * 62.42417 * 17 16 14 20 20 N 1.46899 * 109.47007 * 64.02246 * 19 17 16 21 21 C 1.53003 * 109.46825 * 302.42784 * 17 16 14 22 22 C 1.52998 * 117.51326 * 231.28192 * 21 17 16 23 23 C 1.52992 * 117.49809 * 299.90927 * 21 17 16 24 24 H 1.09005 * 109.47855 * 300.00609 * 1 2 3 25 25 H 1.09001 * 109.46964 * 60.00263 * 1 2 3 26 26 H 1.09000 * 109.47741 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47049 * 179.97438 * 3 2 1 28 28 H 1.09001 * 109.46951 * 299.99745 * 3 2 1 29 29 H 1.09004 * 109.47484 * 59.99736 * 3 2 1 30 30 H 0.96996 * 120.00399 * 179.97438 * 7 6 4 31 31 H 1.08999 * 109.47207 * 180.02562 * 12 2 1 32 32 H 1.09000 * 109.46833 * 59.99514 * 12 2 1 33 33 H 0.97003 * 120.00085 * 359.97438 * 13 12 2 34 34 H 1.08997 * 109.47129 * 65.93719 * 16 14 13 35 35 H 1.09007 * 109.47226 * 305.92997 * 16 14 13 36 36 H 1.09003 * 109.47513 * 184.01769 * 19 17 16 37 37 H 1.08999 * 109.47543 * 304.02596 * 19 17 16 38 38 H 1.00901 * 111.00282 * 174.19383 * 20 19 17 39 39 H 1.00907 * 110.99977 * 298.14219 * 20 19 17 40 40 H 1.09003 * 115.54895 * 85.58765 * 21 17 16 41 41 H 1.09004 * 117.49979 * 214.97196 * 22 21 17 42 42 H 1.08999 * 117.50353 * 359.97438 * 22 21 17 43 43 H 1.09004 * 117.50081 * 359.97438 * 23 21 17 44 44 H 1.09004 * 117.49470 * 145.00194 * 23 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 -1.2303 5 1 2.6533 -1.5886 -1.1311 6 6 1.6993 -0.2395 -2.4827 7 7 0.9436 0.8300 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 1.8281 -2.5200 -4.0080 10 1 1.8280 -0.4195 -5.2203 11 1 3.8076 -1.1192 -4.0075 12 6 2.0399 -0.7212 1.2493 13 7 1.5515 -0.0305 2.4455 14 6 1.8766 -0.4912 3.6697 15 8 2.5739 -1.4773 3.7809 16 6 1.3747 0.2196 4.9000 17 6 2.0022 -0.4108 6.1449 18 1 1.6064 0.0747 7.0369 19 6 3.5208 -0.2306 6.0974 20 7 3.8461 1.2007 6.1559 21 6 1.6667 -1.9031 6.1850 22 6 1.0678 -2.4583 7.4788 23 6 0.1884 -2.2936 6.2377 24 1 -0.3635 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6766 1.9564 0.8900 30 1 0.7096 1.1616 -3.4844 31 1 3.1299 -0.7208 1.2496 32 1 1.6765 -1.7488 1.2494 33 1 0.9941 0.7583 2.3564 34 1 0.2898 0.1293 4.9546 35 1 1.6495 1.2732 4.8485 36 1 3.9741 -0.7412 6.9472 37 1 3.9082 -0.6536 5.1705 38 1 4.8430 1.3426 6.2214 39 1 3.4625 1.6914 5.3621 40 1 2.3389 -2.5513 5.6228 41 1 1.3459 -3.4719 7.7678 42 1 0.9131 -1.7606 8.3018 43 1 -0.5452 -1.4874 6.2442 44 1 -0.1121 -3.1989 5.7101 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000700745598.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:06:01 Heat of formation + Delta-G solvation = -30.561751 kcal Electronic energy + Delta-G solvation = -21451.214708 eV Core-core repulsion = 18403.592955 eV Total energy + Delta-G solvation = -3047.621753 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.88372 -37.70834 -36.22656 -34.76445 -33.26051 -31.26011 -30.52637 -26.93507 -25.74946 -25.46390 -24.49225 -22.27356 -22.15872 -20.64066 -19.45706 -18.69878 -16.78564 -16.55303 -15.77187 -15.21610 -15.05264 -14.99686 -14.74839 -14.42695 -13.63651 -13.50478 -13.11469 -12.91226 -12.76526 -12.26558 -12.14328 -11.72052 -11.44246 -11.32956 -11.22326 -11.14063 -10.95594 -10.83567 -10.74124 -10.40004 -10.22674 -10.17282 -9.86442 -9.65333 -9.44688 -9.13884 -8.81455 -8.62475 -8.43702 -8.27470 -6.03772 -4.14024 3.10334 3.28406 3.32921 3.36205 3.77981 3.89886 4.38373 4.45650 4.83387 4.86305 4.96000 5.14933 5.22863 5.27771 5.31865 5.54359 5.60366 5.68665 5.71199 5.85857 5.96106 6.09339 6.15500 6.20342 6.24510 6.31534 6.49207 6.55592 6.77612 6.80285 6.92015 6.99656 7.06218 7.09949 7.33913 7.36748 7.53568 7.67368 7.98881 8.06882 8.16098 8.37024 8.75649 8.86912 9.51838 10.97527 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.029558 B = 0.004118 C = 0.003967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.076534 B = 6798.074284 C = 7056.902464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.056 3.944 3 C -0.130 4.130 4 C -0.507 4.507 5 H 0.056 0.944 6 C 0.067 3.933 7 N -0.886 5.886 8 Si 0.893 3.107 9 H -0.277 1.277 10 H -0.287 1.287 11 H -0.277 1.277 12 C 0.133 3.867 13 N -0.719 5.719 14 C 0.504 3.496 15 O -0.546 6.546 16 C -0.141 4.141 17 C -0.033 4.033 18 H 0.078 0.922 19 C 0.057 3.943 20 N -0.855 5.855 21 C -0.132 4.132 22 C -0.189 4.189 23 C -0.181 4.181 24 H 0.006 0.994 25 H 0.085 0.915 26 H 0.026 0.974 27 H 0.025 0.975 28 H 0.085 0.915 29 H 0.006 0.994 30 H 0.260 0.740 31 H 0.051 0.949 32 H 0.052 0.948 33 H 0.396 0.604 34 H 0.090 0.910 35 H 0.088 0.912 36 H 0.067 0.933 37 H 0.055 0.945 38 H 0.339 0.661 39 H 0.337 0.663 40 H 0.121 0.879 41 H 0.088 0.912 42 H 0.089 0.911 43 H 0.089 0.911 44 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.180 0.578 15.425 15.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.055 3.945 3 C -0.187 4.187 4 C -0.545 4.545 5 H 0.074 0.926 6 C -0.135 4.135 7 N -0.524 5.524 8 Si 0.721 3.279 9 H -0.203 1.203 10 H -0.213 1.213 11 H -0.203 1.203 12 C 0.011 3.989 13 N -0.370 5.370 14 C 0.290 3.710 15 O -0.425 6.425 16 C -0.181 4.181 17 C -0.052 4.052 18 H 0.096 0.904 19 C -0.073 4.073 20 N -0.384 5.384 21 C -0.150 4.150 22 C -0.226 4.226 23 C -0.218 4.218 24 H 0.025 0.975 25 H 0.104 0.896 26 H 0.045 0.955 27 H 0.044 0.956 28 H 0.104 0.896 29 H 0.025 0.975 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.231 0.769 34 H 0.109 0.891 35 H 0.106 0.894 36 H 0.086 0.914 37 H 0.073 0.927 38 H 0.151 0.849 39 H 0.149 0.851 40 H 0.139 0.861 41 H 0.107 0.893 42 H 0.108 0.892 43 H 0.108 0.892 44 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -0.181 -0.018 16.003 16.004 hybrid contribution 0.448 -0.253 -1.865 1.935 sum 0.267 -0.271 14.138 14.143 Atomic orbital electron populations 1.21820 0.97771 0.99119 1.00049 1.18349 0.92781 0.92728 0.90642 1.21820 0.98462 0.98390 1.00061 1.20946 1.31551 1.12103 0.89947 0.92581 1.24874 0.94840 0.94912 0.98825 1.69785 1.36623 1.22699 1.23334 0.86642 0.79233 0.79814 0.82220 1.20280 1.21302 1.20301 1.21660 0.97876 0.95743 0.83643 1.46380 1.52686 1.31753 1.06179 1.20569 0.80753 0.84898 0.84797 1.90584 1.38605 1.26628 1.86721 1.21792 1.02217 1.00556 0.93518 1.20453 0.95251 0.93161 0.96336 0.90393 1.21949 0.95340 0.88301 1.01735 1.58826 1.18335 1.11366 1.49873 1.22417 0.96406 0.96590 0.99616 1.23029 1.05613 1.02033 0.91952 1.22863 0.94053 1.03123 1.01788 0.97507 0.89646 0.95513 0.95567 0.89627 0.97519 0.92942 0.93015 0.92917 0.76873 0.89119 0.89376 0.91442 0.92723 0.84936 0.85056 0.86075 0.89331 0.89238 0.89245 0.89164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.90 8.08 37.16 0.30 -2.60 16 2 C 0.06 1.27 0.50 -155.66 -0.08 1.19 16 3 C -0.13 -2.87 8.08 37.16 0.30 -2.57 16 4 C -0.51 -13.19 8.01 -34.44 -0.28 -13.46 16 5 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 6 C 0.07 1.75 5.15 -17.82 -0.09 1.65 16 7 N -0.89 -23.44 9.35 55.43 0.52 -22.92 16 8 Si 0.89 20.62 29.54 -169.99 -5.02 15.60 16 9 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 10 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 12 C 0.13 2.77 4.50 -4.04 -0.02 2.76 16 13 N -0.72 -12.21 4.96 -60.29 -0.30 -12.51 16 14 C 0.50 8.02 7.17 -10.98 -0.08 7.95 16 15 O -0.55 -10.21 11.90 5.56 0.07 -10.15 16 16 C -0.14 -1.68 5.10 -27.88 -0.14 -1.82 16 17 C -0.03 -0.39 2.50 -90.62 -0.23 -0.61 16 18 H 0.08 0.87 7.90 -51.93 -0.41 0.46 16 19 C 0.06 0.70 6.00 -3.82 -0.02 0.67 16 20 N -0.85 -9.19 9.56 -10.37 -0.10 -9.29 16 21 C -0.13 -1.65 3.89 -90.62 -0.35 -2.00 16 22 C -0.19 -2.01 10.18 -26.73 -0.27 -2.28 16 23 C -0.18 -2.09 9.76 -26.74 -0.26 -2.36 16 24 H 0.01 0.12 6.86 -51.93 -0.36 -0.24 16 25 H 0.08 2.11 6.07 -51.93 -0.32 1.80 16 26 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.09 2.11 6.07 -51.93 -0.32 1.79 16 29 H 0.01 0.11 6.86 -51.93 -0.36 -0.24 16 30 H 0.26 6.68 8.31 -40.82 -0.34 6.35 16 31 H 0.05 1.14 8.14 -51.93 -0.42 0.71 16 32 H 0.05 1.17 8.14 -51.93 -0.42 0.74 16 33 H 0.40 6.15 6.16 -40.82 -0.25 5.89 16 34 H 0.09 0.99 7.38 -51.93 -0.38 0.60 16 35 H 0.09 0.92 6.68 -51.93 -0.35 0.58 16 36 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 37 H 0.05 0.81 5.87 -51.93 -0.30 0.50 16 38 H 0.34 3.20 9.08 -39.29 -0.36 2.84 16 39 H 0.34 3.55 7.37 -39.29 -0.29 3.26 16 40 H 0.12 1.83 6.66 -51.93 -0.35 1.48 16 41 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.09 0.86 8.05 -51.93 -0.42 0.44 16 43 H 0.09 0.95 7.64 -51.93 -0.40 0.55 16 44 H 0.09 1.08 8.14 -51.93 -0.42 0.65 16 LS Contribution 337.24 15.07 5.08 5.08 Total: -1.00 -27.15 337.24 -8.32 -35.47 By element: Atomic # 1 Polarization: 19.54 SS G_CDS: -7.35 Total: 12.19 kcal Atomic # 6 Polarization: -12.26 SS G_CDS: -1.22 Total: -13.48 kcal Atomic # 7 Polarization: -44.84 SS G_CDS: 0.12 Total: -44.71 kcal Atomic # 8 Polarization: -10.21 SS G_CDS: 0.07 Total: -10.15 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -27.15 -8.32 -35.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700745598.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.910 kcal (2) G-P(sol) polarization free energy of solvation -27.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds