Wall clock time and date at job start Mon Mar 30 2020 05:06:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47194 * 2 1 4 4 C 1.50698 * 109.47490 * 239.99342 * 2 1 3 5 5 H 1.07996 * 120.00096 * 240.00318 * 4 2 1 6 6 C 1.37885 * 119.99249 * 60.00084 * 4 2 1 7 7 N 1.31507 * 120.00543 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99561 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.47119 * 60.00158 * 8 6 4 10 10 H 1.48492 * 109.47000 * 180.02562 * 8 6 4 11 11 H 1.48504 * 109.47097 * 300.00383 * 8 6 4 12 12 C 1.53005 * 109.46967 * 119.99673 * 2 1 3 13 13 N 1.46502 * 109.47031 * 300.00288 * 12 2 1 14 14 C 1.34781 * 120.00125 * 179.97438 * 13 12 2 15 15 O 1.21277 * 119.99443 * 0.02562 * 14 13 12 16 16 C 1.50698 * 119.99839 * 179.97438 * 14 13 12 17 17 C 1.53004 * 109.46870 * 185.93538 * 16 14 13 18 18 H 1.09000 * 109.47247 * 182.42739 * 17 16 14 19 19 C 1.53000 * 109.47159 * 62.42417 * 17 16 14 20 20 N 1.46899 * 109.47007 * 64.02246 * 19 17 16 21 21 C 1.53003 * 109.46825 * 302.42784 * 17 16 14 22 22 C 1.52998 * 117.51326 * 231.28192 * 21 17 16 23 23 C 1.52992 * 117.49809 * 299.90927 * 21 17 16 24 24 H 1.09005 * 109.47855 * 300.00609 * 1 2 3 25 25 H 1.09001 * 109.46964 * 60.00263 * 1 2 3 26 26 H 1.09000 * 109.47741 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47049 * 179.97438 * 3 2 1 28 28 H 1.09001 * 109.46951 * 299.99745 * 3 2 1 29 29 H 1.09004 * 109.47484 * 59.99736 * 3 2 1 30 30 H 0.96996 * 120.00399 * 179.97438 * 7 6 4 31 31 H 1.08999 * 109.47207 * 180.02562 * 12 2 1 32 32 H 1.09000 * 109.46833 * 59.99514 * 12 2 1 33 33 H 0.97003 * 120.00085 * 359.97438 * 13 12 2 34 34 H 1.08997 * 109.47129 * 65.93719 * 16 14 13 35 35 H 1.09007 * 109.47226 * 305.92997 * 16 14 13 36 36 H 1.09003 * 109.47513 * 184.01769 * 19 17 16 37 37 H 1.08999 * 109.47543 * 304.02596 * 19 17 16 38 38 H 1.00901 * 111.00282 * 174.19383 * 20 19 17 39 39 H 1.00907 * 110.99977 * 298.14219 * 20 19 17 40 40 H 1.09003 * 115.54895 * 85.58765 * 21 17 16 41 41 H 1.09004 * 117.49979 * 214.97196 * 22 21 17 42 42 H 1.08999 * 117.50353 * 359.97438 * 22 21 17 43 43 H 1.09004 * 117.50081 * 359.97438 * 23 21 17 44 44 H 1.09004 * 117.49470 * 145.00194 * 23 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 -1.2303 5 1 2.6533 -1.5886 -1.1311 6 6 1.6993 -0.2395 -2.4827 7 7 0.9436 0.8300 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 1.8281 -2.5200 -4.0080 10 1 1.8280 -0.4195 -5.2203 11 1 3.8076 -1.1192 -4.0075 12 6 2.0399 -0.7212 1.2493 13 7 1.5515 -0.0305 2.4455 14 6 1.8766 -0.4912 3.6697 15 8 2.5739 -1.4773 3.7809 16 6 1.3747 0.2196 4.9000 17 6 2.0022 -0.4108 6.1449 18 1 1.6064 0.0747 7.0369 19 6 3.5208 -0.2306 6.0974 20 7 3.8461 1.2007 6.1559 21 6 1.6667 -1.9031 6.1850 22 6 1.0678 -2.4583 7.4788 23 6 0.1884 -2.2936 6.2377 24 1 -0.3635 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6766 1.9564 0.8900 30 1 0.7096 1.1616 -3.4844 31 1 3.1299 -0.7208 1.2496 32 1 1.6765 -1.7488 1.2494 33 1 0.9941 0.7583 2.3564 34 1 0.2898 0.1293 4.9546 35 1 1.6495 1.2732 4.8485 36 1 3.9741 -0.7412 6.9472 37 1 3.9082 -0.6536 5.1705 38 1 4.8430 1.3426 6.2214 39 1 3.4625 1.6914 5.3621 40 1 2.3389 -2.5513 5.6228 41 1 1.3459 -3.4719 7.7678 42 1 0.9131 -1.7606 8.3018 43 1 -0.5452 -1.4874 6.2442 44 1 -0.1121 -3.1989 5.7101 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000700745598.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:06:01 Heat of formation + Delta-G solvation = -47.557858 kcal Electronic energy + Delta-G solvation = -21451.951715 eV Core-core repulsion = 18403.592955 eV Total energy + Delta-G solvation = -3048.358760 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.11580 -38.93675 -37.77441 -35.70416 -34.91432 -32.85006 -31.73334 -28.13853 -27.56150 -27.32600 -26.03866 -23.22075 -23.06163 -21.84932 -20.72504 -20.39173 -18.17149 -17.60052 -17.45821 -16.72831 -16.34195 -16.22684 -15.93866 -15.75543 -14.87819 -14.81085 -14.51245 -14.42616 -14.05956 -13.88361 -13.34805 -13.13451 -13.07679 -12.72445 -12.63255 -12.58578 -12.27680 -12.23336 -12.15627 -12.08161 -11.90078 -11.47661 -11.23151 -11.08342 -10.79573 -10.72239 -10.40533 -10.38812 -9.85342 -9.50975 -8.02760 -6.18564 1.42662 1.44118 1.50506 1.84099 2.38440 2.54933 2.98255 3.20644 3.54580 3.86810 3.97323 4.03702 4.18294 4.24489 4.38849 4.48173 4.52405 4.59870 4.70139 4.72515 4.78232 4.83813 4.94812 5.00262 5.05683 5.06642 5.12240 5.17483 5.19945 5.28015 5.31592 5.39055 5.55865 5.66286 5.67454 5.71162 6.15581 6.21686 6.22422 6.43521 6.56017 6.79439 6.85738 7.47557 7.49142 8.95703 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.029558 B = 0.004118 C = 0.003967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.076534 B = 6798.074284 C = 7056.902464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.050 3.950 3 C -0.118 4.118 4 C -0.530 4.530 5 H 0.042 0.958 6 C 0.030 3.970 7 N -0.898 5.898 8 Si 0.943 3.057 9 H -0.278 1.278 10 H -0.282 1.282 11 H -0.278 1.278 12 C 0.152 3.848 13 N -0.716 5.716 14 C 0.502 3.498 15 O -0.575 6.575 16 C -0.131 4.131 17 C -0.027 4.027 18 H 0.096 0.904 19 C 0.062 3.938 20 N -0.849 5.849 21 C -0.148 4.148 22 C -0.173 4.173 23 C -0.184 4.184 24 H 0.038 0.962 25 H 0.061 0.939 26 H 0.015 0.985 27 H 0.016 0.984 28 H 0.061 0.939 29 H 0.039 0.961 30 H 0.260 0.740 31 H 0.033 0.967 32 H 0.032 0.968 33 H 0.407 0.593 34 H 0.111 0.889 35 H 0.111 0.889 36 H 0.069 0.931 37 H 0.023 0.977 38 H 0.346 0.654 39 H 0.340 0.660 40 H 0.088 0.912 41 H 0.091 0.909 42 H 0.107 0.893 43 H 0.104 0.896 44 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.967 1.674 17.122 17.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.050 3.950 3 C -0.176 4.176 4 C -0.569 4.569 5 H 0.060 0.940 6 C -0.170 4.170 7 N -0.537 5.537 8 Si 0.769 3.231 9 H -0.203 1.203 10 H -0.207 1.207 11 H -0.203 1.203 12 C 0.028 3.972 13 N -0.368 5.368 14 C 0.290 3.710 15 O -0.456 6.456 16 C -0.171 4.171 17 C -0.046 4.046 18 H 0.114 0.886 19 C -0.068 4.068 20 N -0.379 5.379 21 C -0.167 4.167 22 C -0.210 4.210 23 C -0.221 4.221 24 H 0.057 0.943 25 H 0.080 0.920 26 H 0.034 0.966 27 H 0.035 0.965 28 H 0.080 0.920 29 H 0.058 0.942 30 H 0.070 0.930 31 H 0.051 0.949 32 H 0.050 0.950 33 H 0.243 0.757 34 H 0.129 0.871 35 H 0.129 0.871 36 H 0.087 0.913 37 H 0.041 0.959 38 H 0.158 0.842 39 H 0.152 0.848 40 H 0.106 0.894 41 H 0.110 0.890 42 H 0.126 0.874 43 H 0.123 0.877 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -0.973 1.095 17.716 17.777 hybrid contribution 0.728 -0.636 -2.357 2.548 sum -0.245 0.459 15.359 15.368 Atomic orbital electron populations 1.21653 0.97148 0.98489 1.00398 1.18355 0.93211 0.93074 0.90390 1.21648 0.97752 0.97801 1.00430 1.21251 1.31768 1.12147 0.91737 0.94014 1.25430 0.95138 0.95584 1.00882 1.69890 1.36919 1.23201 1.23647 0.85859 0.78622 0.78835 0.79739 1.20348 1.20725 1.20316 1.21141 0.96576 0.94829 0.84641 1.46219 1.53111 1.31983 1.05460 1.21331 0.79829 0.84495 0.85344 1.90601 1.39761 1.28102 1.87111 1.21826 1.03228 1.01076 0.90978 1.20437 0.94735 0.92627 0.96792 0.88585 1.21823 0.95855 0.88970 1.00191 1.58841 1.19058 1.10224 1.49788 1.22271 0.96530 0.96783 1.01094 1.23097 1.03742 1.02503 0.91622 1.22923 0.93675 1.03192 1.02323 0.94295 0.92013 0.96574 0.96498 0.92030 0.94233 0.93017 0.94855 0.94956 0.75668 0.87086 0.87114 0.91284 0.95867 0.84150 0.84762 0.89409 0.89044 0.87447 0.87744 0.90225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.23 8.08 71.98 0.58 -4.65 16 2 C 0.05 2.30 0.50 -52.93 -0.03 2.27 16 3 C -0.12 -5.16 8.08 71.98 0.58 -4.58 16 4 C -0.53 -28.04 8.01 25.60 0.21 -27.84 16 5 H 0.04 2.26 7.74 -2.91 -0.02 2.24 16 6 C 0.03 1.55 5.15 84.66 0.44 1.99 16 7 N -0.90 -47.64 9.35 21.45 0.20 -47.44 16 8 Si 0.94 42.54 29.54 68.60 2.03 44.57 16 9 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 10 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 11 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 12 C 0.15 6.37 4.50 86.38 0.39 6.76 16 13 N -0.72 -23.32 4.96 -463.05 -2.30 -25.61 16 14 C 0.50 15.38 7.17 87.66 0.63 16.01 16 15 O -0.58 -21.72 11.90 -3.02 -0.04 -21.76 16 16 C -0.13 -2.75 5.10 29.85 0.15 -2.60 16 17 C -0.03 -0.57 2.50 -10.79 -0.03 -0.59 16 18 H 0.10 1.76 7.90 -2.39 -0.02 1.74 16 19 C 0.06 1.44 6.00 86.30 0.52 1.96 16 20 N -0.85 -16.40 9.56 -186.72 -1.78 -18.18 16 21 C -0.15 -3.54 3.89 -10.80 -0.04 -3.58 16 22 C -0.17 -3.28 10.18 30.59 0.31 -2.97 16 23 C -0.18 -3.91 9.76 30.59 0.30 -3.62 16 24 H 0.04 1.41 6.86 -2.38 -0.02 1.39 16 25 H 0.06 3.03 6.07 -2.39 -0.01 3.01 16 26 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 27 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.06 3.00 6.07 -2.39 -0.01 2.99 16 29 H 0.04 1.41 6.86 -2.38 -0.02 1.40 16 30 H 0.26 13.35 8.31 -92.71 -0.77 12.58 16 31 H 0.03 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.03 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.41 11.49 6.16 -92.71 -0.57 10.92 16 34 H 0.11 1.96 7.38 -2.39 -0.02 1.94 16 35 H 0.11 1.88 6.68 -2.38 -0.02 1.86 16 36 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.02 0.69 5.87 -2.39 -0.01 0.67 16 38 H 0.35 5.92 9.08 -89.69 -0.81 5.11 16 39 H 0.34 6.28 7.37 -89.69 -0.66 5.62 16 40 H 0.09 2.72 6.66 -2.39 -0.02 2.70 16 41 H 0.09 1.67 8.14 -2.38 -0.02 1.65 16 42 H 0.11 1.68 8.05 -2.39 -0.02 1.66 16 43 H 0.10 1.89 7.64 -2.38 -0.02 1.87 16 44 H 0.08 1.84 8.14 -2.38 -0.02 1.82 16 Total: -1.00 -59.15 337.24 1.08 -58.07 By element: Atomic # 1 Polarization: 32.83 SS G_CDS: -1.04 Total: 31.80 kcal Atomic # 6 Polarization: -25.44 SS G_CDS: 4.01 Total: -21.43 kcal Atomic # 7 Polarization: -87.36 SS G_CDS: -3.88 Total: -91.24 kcal Atomic # 8 Polarization: -21.72 SS G_CDS: -0.04 Total: -21.76 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 2.03 Total: 44.57 kcal Total: -59.15 1.08 -58.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700745598.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.509 kcal (2) G-P(sol) polarization free energy of solvation -59.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds