Wall clock time and date at job start Mon Mar 30 2020 05:06:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47296 * 2 1 4 4 C 1.50704 * 109.46850 * 240.00740 * 2 1 3 5 5 H 1.08004 * 119.99523 * 239.99351 * 4 2 1 6 6 C 1.37876 * 120.00199 * 59.99671 * 4 2 1 7 7 N 1.31509 * 119.99829 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99732 * 179.97438 * 6 4 2 9 9 H 1.48495 * 109.47076 * 0.02562 * 8 6 4 10 10 H 1.48499 * 109.46798 * 120.00412 * 8 6 4 11 11 H 1.48498 * 109.47092 * 239.99779 * 8 6 4 12 12 C 1.52994 * 109.47341 * 120.00345 * 2 1 3 13 13 N 1.46497 * 109.47290 * 299.99848 * 12 2 1 14 14 C 1.34777 * 120.00165 * 180.02562 * 13 12 2 15 15 O 1.21281 * 119.99899 * 359.97438 * 14 13 12 16 16 C 1.50701 * 119.99831 * 180.02562 * 14 13 12 17 17 C 1.53000 * 109.46910 * 186.41551 * 16 14 13 18 18 H 1.09003 * 109.47526 * 306.29843 * 17 16 14 19 19 C 1.53000 * 109.47121 * 66.29755 * 17 16 14 20 20 N 1.46898 * 109.47488 * 184.99908 * 19 17 16 21 21 C 1.53002 * 109.47364 * 186.29613 * 17 16 14 22 22 C 1.52993 * 117.49699 * 55.99492 * 21 17 16 23 23 C 1.53000 * 60.03041 * 107.48157 * 22 21 17 24 24 H 1.09002 * 109.46605 * 299.99860 * 1 2 3 25 25 H 1.08996 * 109.47379 * 59.99370 * 1 2 3 26 26 H 1.08993 * 109.47279 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47527 * 180.02562 * 3 2 1 28 28 H 1.08996 * 109.47421 * 300.00604 * 3 2 1 29 29 H 1.09007 * 109.46491 * 60.00351 * 3 2 1 30 30 H 0.97003 * 119.99976 * 180.02562 * 7 6 4 31 31 H 1.09006 * 109.47320 * 179.97438 * 12 2 1 32 32 H 1.08996 * 109.47206 * 60.00350 * 12 2 1 33 33 H 0.97001 * 119.99990 * 359.97438 * 13 12 2 34 34 H 1.09001 * 109.47280 * 66.41746 * 16 14 13 35 35 H 1.08996 * 109.47442 * 306.41622 * 16 14 13 36 36 H 1.09003 * 109.47301 * 304.99968 * 19 17 16 37 37 H 1.09007 * 109.47361 * 64.99711 * 19 17 16 38 38 H 1.00900 * 111.00460 * 179.97438 * 20 19 17 39 39 H 1.00899 * 110.99715 * 303.95296 * 20 19 17 40 40 H 1.09002 * 115.54750 * 270.33509 * 21 17 16 41 41 H 1.09001 * 117.50535 * 214.97710 * 22 21 17 42 42 H 1.08999 * 117.50215 * 359.97438 * 22 21 17 43 43 H 1.09000 * 117.49826 * 107.50047 * 23 22 21 44 44 H 1.09002 * 117.50064 * 252.52483 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0322 -0.7103 -1.2306 5 1 2.6532 -1.5884 -1.1316 6 6 1.6991 -0.2391 -2.4828 7 7 0.9434 0.8304 -2.6033 8 14 2.3223 -1.1192 -4.0081 9 1 3.1473 -2.2860 -3.6040 10 1 1.1676 -1.5862 -4.8166 11 1 3.1470 -0.1854 -4.8162 12 6 2.0400 -0.7213 1.2491 13 7 1.5518 -0.0308 2.4454 14 6 1.8778 -0.4910 3.6694 15 8 2.5751 -1.4771 3.7806 16 6 1.3751 0.2190 4.8999 17 6 2.0130 -0.4027 6.1439 18 1 1.8415 -1.4791 6.1408 19 6 3.5178 -0.1260 6.1377 20 7 4.1485 -0.8228 7.2666 21 6 1.3870 0.2099 7.3984 22 6 -0.1334 0.1224 7.5440 23 6 0.7696 -0.7482 8.4200 24 1 -0.3632 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 3.1300 1.4426 -0.0005 28 1 1.6767 1.9564 -0.8899 29 1 1.6767 1.9563 0.8901 30 1 0.7087 1.1617 -3.4843 31 1 3.1301 -0.7217 1.2489 32 1 1.6768 -1.7489 1.2491 33 1 0.9944 0.7581 2.3564 34 1 0.2912 0.1198 4.9593 35 1 1.6407 1.2747 4.8444 36 1 3.9492 -0.4841 5.2029 37 1 3.6905 0.9463 6.2303 38 1 5.1435 -0.6561 7.2843 39 1 3.7212 -0.5556 8.1407 40 1 1.8784 1.1050 7.7798 41 1 -0.6424 0.9596 8.0217 42 1 -0.6879 -0.3712 6.7458 43 1 0.8548 -0.4837 9.4740 44 1 0.8096 -1.8146 8.1980 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000700745604.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:06:04 Heat of formation + Delta-G solvation = -35.135230 kcal Electronic energy + Delta-G solvation = -21058.354970 eV Core-core repulsion = 18010.534896 eV Total energy + Delta-G solvation = -3047.820074 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.69677 -38.05467 -36.31913 -34.52343 -33.22973 -31.61169 -30.66639 -26.57604 -25.72818 -25.38586 -24.28121 -22.94493 -22.47815 -20.31532 -19.49883 -18.73790 -16.91458 -16.23460 -15.78353 -15.68769 -15.07223 -14.96299 -14.73088 -14.35229 -14.08114 -13.23456 -13.17919 -12.90062 -12.56349 -12.32554 -12.16730 -11.94669 -11.68615 -11.40740 -11.20099 -11.13470 -10.92663 -10.85648 -10.65800 -10.38615 -10.27267 -10.19901 -10.09177 -9.63238 -9.47772 -9.15856 -8.77081 -8.66890 -8.43562 -8.27247 -6.02223 -4.12096 3.11857 3.27156 3.35781 3.40524 3.56427 3.85895 4.40112 4.47230 4.54022 4.75766 4.85550 5.02438 5.18987 5.24661 5.27521 5.40990 5.46418 5.50440 5.63783 5.73134 5.78379 5.93944 5.98878 6.21377 6.27676 6.34288 6.37446 6.51709 6.80307 6.82412 6.94348 7.02129 7.07567 7.14248 7.36106 7.43059 7.55692 7.69720 8.01020 8.08998 8.17903 8.39118 8.76951 8.89364 9.53836 10.99195 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.036098 B = 0.003636 C = 0.003475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.475822 B = 7698.119753 C = 8056.520882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.055 3.945 3 C -0.130 4.130 4 C -0.505 4.505 5 H 0.058 0.942 6 C 0.066 3.934 7 N -0.886 5.886 8 Si 0.893 3.107 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.285 1.285 12 C 0.132 3.868 13 N -0.719 5.719 14 C 0.500 3.500 15 O -0.547 6.547 16 C -0.137 4.137 17 C -0.040 4.040 18 H 0.090 0.910 19 C 0.067 3.933 20 N -0.846 5.846 21 C -0.150 4.150 22 C -0.182 4.182 23 C -0.174 4.174 24 H 0.006 0.994 25 H 0.085 0.915 26 H 0.026 0.974 27 H 0.026 0.974 28 H 0.085 0.915 29 H 0.006 0.994 30 H 0.259 0.741 31 H 0.053 0.947 32 H 0.053 0.947 33 H 0.397 0.603 34 H 0.094 0.906 35 H 0.087 0.913 36 H 0.088 0.912 37 H 0.018 0.982 38 H 0.338 0.662 39 H 0.335 0.665 40 H 0.098 0.902 41 H 0.092 0.908 42 H 0.095 0.905 43 H 0.090 0.910 44 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.865 2.981 17.983 18.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.054 3.946 3 C -0.188 4.188 4 C -0.544 4.544 5 H 0.076 0.924 6 C -0.136 4.136 7 N -0.525 5.525 8 Si 0.721 3.279 9 H -0.197 1.197 10 H -0.211 1.211 11 H -0.211 1.211 12 C 0.009 3.991 13 N -0.369 5.369 14 C 0.286 3.714 15 O -0.426 6.426 16 C -0.177 4.177 17 C -0.059 4.059 18 H 0.109 0.891 19 C -0.063 4.063 20 N -0.375 5.375 21 C -0.168 4.168 22 C -0.219 4.219 23 C -0.211 4.211 24 H 0.025 0.975 25 H 0.104 0.896 26 H 0.045 0.955 27 H 0.045 0.955 28 H 0.104 0.896 29 H 0.025 0.975 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.232 0.768 34 H 0.112 0.888 35 H 0.106 0.894 36 H 0.107 0.893 37 H 0.036 0.964 38 H 0.149 0.851 39 H 0.147 0.853 40 H 0.116 0.884 41 H 0.110 0.890 42 H 0.114 0.886 43 H 0.109 0.891 44 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -0.697 1.714 17.525 17.623 hybrid contribution 0.238 1.024 -0.611 1.215 sum -0.459 2.737 16.915 17.141 Atomic orbital electron populations 1.21821 0.97778 0.99139 1.00046 1.18361 0.92789 0.92751 0.90672 1.21823 0.98530 0.98379 1.00045 1.21041 1.31336 1.12059 0.89915 0.92405 1.24882 0.94879 0.94930 0.98864 1.69813 1.36799 1.22790 1.23093 0.86522 0.78651 0.79767 0.82993 1.19743 1.21065 1.21073 1.21680 0.98044 0.95764 0.83572 1.46354 1.52669 1.31779 1.06143 1.20602 0.80890 0.84996 0.84944 1.90679 1.38401 1.26610 1.86904 1.21713 1.02165 1.00929 0.92922 1.20507 0.93823 1.01060 0.90487 0.89130 1.21911 0.94083 0.94576 0.95745 1.58635 1.07698 1.65054 1.06074 1.22372 0.95324 1.00851 0.98270 1.22963 0.92900 1.02829 1.03204 1.23011 1.04255 0.97672 0.96195 0.97506 0.89635 0.95484 0.95504 0.89634 0.97510 0.93088 0.92861 0.92846 0.76826 0.88820 0.89441 0.89332 0.96401 0.85059 0.85271 0.88351 0.88995 0.88621 0.89145 0.88529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.93 8.08 37.16 0.30 -2.63 16 2 C 0.05 1.27 0.50 -155.66 -0.08 1.19 16 3 C -0.13 -2.92 8.08 37.16 0.30 -2.62 16 4 C -0.50 -13.27 8.01 -34.44 -0.28 -13.55 16 5 H 0.06 1.55 7.74 -52.48 -0.41 1.14 16 6 C 0.07 1.73 5.15 -17.82 -0.09 1.63 16 7 N -0.89 -23.60 9.35 55.43 0.52 -23.09 16 8 Si 0.89 20.77 29.54 -169.99 -5.02 15.75 16 9 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 10 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 12 C 0.13 2.81 4.50 -4.05 -0.02 2.79 16 13 N -0.72 -12.59 4.96 -60.30 -0.30 -12.89 16 14 C 0.50 8.37 7.38 -10.98 -0.08 8.29 16 15 O -0.55 -11.15 14.34 5.56 0.08 -11.07 16 16 C -0.14 -1.65 5.06 -27.88 -0.14 -1.79 16 17 C -0.04 -0.47 1.89 -90.62 -0.17 -0.64 16 18 H 0.09 1.31 7.55 -51.93 -0.39 0.92 16 19 C 0.07 0.83 6.01 -3.83 -0.02 0.81 16 20 N -0.85 -9.27 9.62 -10.37 -0.10 -9.37 16 21 C -0.15 -1.38 4.26 -90.59 -0.39 -1.77 16 22 C -0.18 -1.55 9.63 -26.73 -0.26 -1.81 16 23 C -0.17 -1.50 10.18 -26.70 -0.27 -1.77 16 24 H 0.01 0.12 6.86 -51.93 -0.36 -0.24 16 25 H 0.08 2.13 6.07 -51.93 -0.32 1.81 16 26 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.08 2.13 6.07 -51.93 -0.32 1.81 16 29 H 0.01 0.12 6.86 -51.93 -0.36 -0.24 16 30 H 0.26 6.65 8.31 -40.82 -0.34 6.31 16 31 H 0.05 1.20 8.14 -51.93 -0.42 0.77 16 32 H 0.05 1.21 8.14 -51.93 -0.42 0.78 16 33 H 0.40 6.26 6.16 -40.82 -0.25 6.01 16 34 H 0.09 1.00 6.83 -51.93 -0.35 0.64 16 35 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 36 H 0.09 1.38 6.23 -51.93 -0.32 1.06 16 37 H 0.02 0.20 8.14 -51.93 -0.42 -0.22 16 38 H 0.34 3.19 9.08 -39.29 -0.36 2.83 16 39 H 0.34 3.08 8.07 -39.29 -0.32 2.77 16 40 H 0.10 0.84 8.08 -51.93 -0.42 0.42 16 41 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.10 0.85 7.32 -51.93 -0.38 0.47 16 43 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 44 H 0.10 0.91 8.03 -51.93 -0.42 0.49 16 LS Contribution 342.28 15.07 5.16 5.16 Total: -1.00 -28.52 342.28 -8.34 -36.86 By element: Atomic # 1 Polarization: 17.98 SS G_CDS: -7.48 Total: 10.50 kcal Atomic # 6 Polarization: -10.67 SS G_CDS: -1.20 Total: -11.86 kcal Atomic # 7 Polarization: -45.46 SS G_CDS: 0.12 Total: -45.34 kcal Atomic # 8 Polarization: -11.15 SS G_CDS: 0.08 Total: -11.07 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -28.52 -8.34 -36.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700745604.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.724 kcal (2) G-P(sol) polarization free energy of solvation -28.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds