Wall clock time and date at job start Mon Mar 30 2020 05:06:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47296 * 2 1 4 4 C 1.50704 * 109.46850 * 240.00740 * 2 1 3 5 5 H 1.08004 * 119.99523 * 239.99351 * 4 2 1 6 6 C 1.37876 * 120.00199 * 59.99671 * 4 2 1 7 7 N 1.31509 * 119.99829 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99732 * 179.97438 * 6 4 2 9 9 H 1.48495 * 109.47076 * 0.02562 * 8 6 4 10 10 H 1.48499 * 109.46798 * 120.00412 * 8 6 4 11 11 H 1.48498 * 109.47092 * 239.99779 * 8 6 4 12 12 C 1.52994 * 109.47341 * 120.00345 * 2 1 3 13 13 N 1.46497 * 109.47290 * 299.99848 * 12 2 1 14 14 C 1.34777 * 120.00165 * 180.02562 * 13 12 2 15 15 O 1.21281 * 119.99899 * 359.97438 * 14 13 12 16 16 C 1.50701 * 119.99831 * 180.02562 * 14 13 12 17 17 C 1.53000 * 109.46910 * 186.41551 * 16 14 13 18 18 H 1.09003 * 109.47526 * 306.29843 * 17 16 14 19 19 C 1.53000 * 109.47121 * 66.29755 * 17 16 14 20 20 N 1.46898 * 109.47488 * 184.99908 * 19 17 16 21 21 C 1.53002 * 109.47364 * 186.29613 * 17 16 14 22 22 C 1.52993 * 117.49699 * 55.99492 * 21 17 16 23 23 C 1.53000 * 60.03041 * 107.48157 * 22 21 17 24 24 H 1.09002 * 109.46605 * 299.99860 * 1 2 3 25 25 H 1.08996 * 109.47379 * 59.99370 * 1 2 3 26 26 H 1.08993 * 109.47279 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47527 * 180.02562 * 3 2 1 28 28 H 1.08996 * 109.47421 * 300.00604 * 3 2 1 29 29 H 1.09007 * 109.46491 * 60.00351 * 3 2 1 30 30 H 0.97003 * 119.99976 * 180.02562 * 7 6 4 31 31 H 1.09006 * 109.47320 * 179.97438 * 12 2 1 32 32 H 1.08996 * 109.47206 * 60.00350 * 12 2 1 33 33 H 0.97001 * 119.99990 * 359.97438 * 13 12 2 34 34 H 1.09001 * 109.47280 * 66.41746 * 16 14 13 35 35 H 1.08996 * 109.47442 * 306.41622 * 16 14 13 36 36 H 1.09003 * 109.47301 * 304.99968 * 19 17 16 37 37 H 1.09007 * 109.47361 * 64.99711 * 19 17 16 38 38 H 1.00900 * 111.00460 * 179.97438 * 20 19 17 39 39 H 1.00899 * 110.99715 * 303.95296 * 20 19 17 40 40 H 1.09002 * 115.54750 * 270.33509 * 21 17 16 41 41 H 1.09001 * 117.50535 * 214.97710 * 22 21 17 42 42 H 1.08999 * 117.50215 * 359.97438 * 22 21 17 43 43 H 1.09000 * 117.49826 * 107.50047 * 23 22 21 44 44 H 1.09002 * 117.50064 * 252.52483 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0322 -0.7103 -1.2306 5 1 2.6532 -1.5884 -1.1316 6 6 1.6991 -0.2391 -2.4828 7 7 0.9434 0.8304 -2.6033 8 14 2.3223 -1.1192 -4.0081 9 1 3.1473 -2.2860 -3.6040 10 1 1.1676 -1.5862 -4.8166 11 1 3.1470 -0.1854 -4.8162 12 6 2.0400 -0.7213 1.2491 13 7 1.5518 -0.0308 2.4454 14 6 1.8778 -0.4910 3.6694 15 8 2.5751 -1.4771 3.7806 16 6 1.3751 0.2190 4.8999 17 6 2.0130 -0.4027 6.1439 18 1 1.8415 -1.4791 6.1408 19 6 3.5178 -0.1260 6.1377 20 7 4.1485 -0.8228 7.2666 21 6 1.3870 0.2099 7.3984 22 6 -0.1334 0.1224 7.5440 23 6 0.7696 -0.7482 8.4200 24 1 -0.3632 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 3.1300 1.4426 -0.0005 28 1 1.6767 1.9564 -0.8899 29 1 1.6767 1.9563 0.8901 30 1 0.7087 1.1617 -3.4843 31 1 3.1301 -0.7217 1.2489 32 1 1.6768 -1.7489 1.2491 33 1 0.9944 0.7581 2.3564 34 1 0.2912 0.1198 4.9593 35 1 1.6407 1.2747 4.8444 36 1 3.9492 -0.4841 5.2029 37 1 3.6905 0.9463 6.2303 38 1 5.1435 -0.6561 7.2843 39 1 3.7212 -0.5556 8.1407 40 1 1.8784 1.1050 7.7798 41 1 -0.6424 0.9596 8.0217 42 1 -0.6879 -0.3712 6.7458 43 1 0.8548 -0.4837 9.4740 44 1 0.8096 -1.8146 8.1980 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000700745604.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:06:03 Heat of formation + Delta-G solvation = -53.680118 kcal Electronic energy + Delta-G solvation = -21059.159136 eV Core-core repulsion = 18010.534896 eV Total energy + Delta-G solvation = -3048.624241 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.98718 -39.08573 -37.97989 -35.41132 -34.92616 -32.98271 -32.15160 -27.91407 -27.56043 -27.26854 -25.75272 -23.83325 -23.15021 -21.57535 -20.64730 -20.39987 -18.34385 -17.63549 -17.06851 -16.87756 -16.53920 -16.38598 -15.95648 -15.62160 -15.07414 -14.80631 -14.62376 -14.43776 -13.97069 -13.64316 -13.47317 -13.15793 -13.10990 -12.84363 -12.68468 -12.57532 -12.36234 -12.25528 -12.14438 -11.99895 -11.81883 -11.48124 -11.25486 -11.03670 -10.87625 -10.72756 -10.55044 -10.40327 -9.88075 -9.52142 -8.03039 -6.18646 1.40312 1.44560 1.54028 1.78226 2.35524 2.51321 2.96826 3.20429 3.60689 3.69469 3.95481 4.12482 4.14410 4.24627 4.37981 4.41745 4.50839 4.52091 4.62894 4.71212 4.73060 4.83245 4.92432 4.99582 5.03974 5.06389 5.12421 5.15987 5.19856 5.28723 5.35550 5.39036 5.48698 5.64861 5.66938 5.67515 6.15658 6.22164 6.30723 6.43707 6.68593 6.75177 6.85825 7.42011 7.49169 8.95894 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.036098 B = 0.003636 C = 0.003475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.475822 B = 7698.119753 C = 8056.520882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.050 3.950 3 C -0.119 4.119 4 C -0.529 4.529 5 H 0.042 0.958 6 C 0.029 3.971 7 N -0.898 5.898 8 Si 0.944 3.056 9 H -0.277 1.277 10 H -0.281 1.281 11 H -0.280 1.280 12 C 0.149 3.851 13 N -0.713 5.713 14 C 0.498 3.502 15 O -0.587 6.587 16 C -0.126 4.126 17 C -0.035 4.035 18 H 0.059 0.941 19 C 0.070 3.930 20 N -0.855 5.855 21 C -0.148 4.148 22 C -0.177 4.177 23 C -0.175 4.175 24 H 0.039 0.961 25 H 0.062 0.938 26 H 0.016 0.984 27 H 0.016 0.984 28 H 0.062 0.938 29 H 0.039 0.961 30 H 0.260 0.740 31 H 0.034 0.966 32 H 0.033 0.967 33 H 0.409 0.591 34 H 0.115 0.885 35 H 0.115 0.885 36 H 0.050 0.950 37 H 0.036 0.964 38 H 0.345 0.655 39 H 0.347 0.653 40 H 0.115 0.885 41 H 0.109 0.891 42 H 0.090 0.910 43 H 0.107 0.893 44 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.667 4.425 19.688 20.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.050 3.950 3 C -0.177 4.177 4 C -0.568 4.568 5 H 0.060 0.940 6 C -0.171 4.171 7 N -0.537 5.537 8 Si 0.771 3.229 9 H -0.201 1.201 10 H -0.207 1.207 11 H -0.206 1.206 12 C 0.025 3.975 13 N -0.365 5.365 14 C 0.286 3.714 15 O -0.468 6.468 16 C -0.166 4.166 17 C -0.054 4.054 18 H 0.077 0.923 19 C -0.061 4.061 20 N -0.386 5.386 21 C -0.167 4.167 22 C -0.214 4.214 23 C -0.212 4.212 24 H 0.058 0.942 25 H 0.081 0.919 26 H 0.035 0.965 27 H 0.035 0.965 28 H 0.081 0.919 29 H 0.058 0.942 30 H 0.070 0.930 31 H 0.052 0.948 32 H 0.052 0.948 33 H 0.246 0.754 34 H 0.133 0.867 35 H 0.133 0.867 36 H 0.069 0.931 37 H 0.054 0.946 38 H 0.158 0.842 39 H 0.161 0.839 40 H 0.133 0.867 41 H 0.127 0.873 42 H 0.108 0.892 43 H 0.126 0.874 44 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -1.514 3.181 19.249 19.568 hybrid contribution 0.512 0.530 -1.108 1.331 sum -1.002 3.711 18.141 18.543 Atomic orbital electron populations 1.21658 0.97047 0.98576 1.00471 1.18363 0.93302 0.93079 0.90293 1.21658 0.97815 0.97780 1.00470 1.21318 1.31640 1.12104 0.91734 0.93999 1.25440 0.95155 0.95605 1.00921 1.69908 1.37017 1.23243 1.23539 0.85721 0.78159 0.78727 0.80285 1.20150 1.20656 1.20635 1.21196 0.96747 0.94940 0.84651 1.46190 1.52935 1.31989 1.05390 1.21464 0.79760 0.84454 0.85718 1.90671 1.40100 1.28593 1.87437 1.21751 1.03180 1.01586 0.90087 1.20398 0.93786 0.99376 0.91857 0.92296 1.21776 0.94293 0.95442 0.94551 1.58564 1.08400 1.65264 1.06343 1.22244 0.95912 1.01387 0.97115 1.23040 0.92274 1.03109 1.02937 1.23044 1.04199 0.96907 0.97091 0.94227 0.91918 0.96493 0.96464 0.91930 0.94215 0.93019 0.94759 0.94836 0.75431 0.86680 0.86725 0.93117 0.94596 0.84205 0.83912 0.86745 0.87257 0.89168 0.87432 0.89960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.30 8.08 71.98 0.58 -4.72 16 2 C 0.05 2.33 0.50 -52.93 -0.03 2.30 16 3 C -0.12 -5.27 8.08 71.98 0.58 -4.69 16 4 C -0.53 -28.32 8.01 25.60 0.21 -28.12 16 5 H 0.04 2.31 7.74 -2.91 -0.02 2.29 16 6 C 0.03 1.51 5.15 84.66 0.44 1.95 16 7 N -0.90 -47.90 9.35 21.45 0.20 -47.70 16 8 Si 0.94 42.90 29.54 68.60 2.03 44.93 16 9 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 10 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 11 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 12 C 0.15 6.41 4.50 86.38 0.39 6.80 16 13 N -0.71 -24.15 4.96 -463.07 -2.30 -26.44 16 14 C 0.50 16.27 7.38 87.66 0.65 16.92 16 15 O -0.59 -24.40 14.34 -3.03 -0.04 -24.44 16 16 C -0.13 -2.74 5.06 29.85 0.15 -2.58 16 17 C -0.03 -0.77 1.89 -10.79 -0.02 -0.79 16 18 H 0.06 1.70 7.55 -2.39 -0.02 1.68 16 19 C 0.07 1.66 6.01 86.30 0.52 2.18 16 20 N -0.85 -17.87 9.62 -186.71 -1.80 -19.67 16 21 C -0.15 -2.31 4.26 -10.77 -0.05 -2.35 16 22 C -0.18 -2.46 9.63 30.59 0.29 -2.16 16 23 C -0.18 -2.60 10.18 30.62 0.31 -2.29 16 24 H 0.04 1.44 6.86 -2.39 -0.02 1.43 16 25 H 0.06 3.09 6.07 -2.39 -0.01 3.07 16 26 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 27 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.06 3.08 6.07 -2.39 -0.01 3.06 16 29 H 0.04 1.44 6.86 -2.38 -0.02 1.43 16 30 H 0.26 13.32 8.31 -92.71 -0.77 12.55 16 31 H 0.03 1.59 8.14 -2.38 -0.02 1.57 16 32 H 0.03 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.41 11.80 6.16 -92.71 -0.57 11.23 16 34 H 0.12 2.07 6.83 -2.39 -0.02 2.05 16 35 H 0.11 1.95 8.14 -2.39 -0.02 1.93 16 36 H 0.05 1.60 6.23 -2.39 -0.01 1.58 16 37 H 0.04 0.71 8.14 -2.38 -0.02 0.69 16 38 H 0.35 6.21 9.08 -89.69 -0.81 5.40 16 39 H 0.35 5.76 8.07 -89.69 -0.72 5.03 16 40 H 0.11 1.48 8.08 -2.39 -0.02 1.46 16 41 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 42 H 0.09 1.37 7.32 -2.39 -0.02 1.35 16 43 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 44 H 0.08 1.47 8.03 -2.39 -0.02 1.45 16 Total: -1.00 -62.84 342.28 1.01 -61.83 By element: Atomic # 1 Polarization: 30.16 SS G_CDS: -1.10 Total: 29.05 kcal Atomic # 6 Polarization: -21.59 SS G_CDS: 4.02 Total: -17.56 kcal Atomic # 7 Polarization: -89.91 SS G_CDS: -3.89 Total: -93.81 kcal Atomic # 8 Polarization: -24.40 SS G_CDS: -0.04 Total: -24.44 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.93 kcal Total: -62.84 1.01 -61.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700745604.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.152 kcal (2) G-P(sol) polarization free energy of solvation -62.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds