Wall clock time and date at job start Mon Mar 30 2020 05:06:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.46972 * 2 1 4 4 C 1.50703 * 109.46966 * 240.00177 * 2 1 3 5 5 H 1.07995 * 120.00280 * 239.99993 * 4 2 1 6 6 C 1.37880 * 119.99788 * 59.99926 * 4 2 1 7 7 N 1.31511 * 120.00327 * 0.02562 * 6 4 2 8 8 Si 1.86806 * 119.99600 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47070 * 90.00336 * 8 6 4 10 10 H 1.48502 * 109.46496 * 209.99700 * 8 6 4 11 11 H 1.48500 * 109.47072 * 329.99934 * 8 6 4 12 12 C 1.52997 * 109.47415 * 120.00140 * 2 1 3 13 13 N 1.46496 * 109.47194 * 300.00058 * 12 2 1 14 14 C 1.34779 * 120.00054 * 179.97438 * 13 12 2 15 15 O 1.21273 * 120.00093 * 0.02562 * 14 13 12 16 16 C 1.50706 * 119.99767 * 179.97438 * 14 13 12 17 17 C 1.53000 * 109.46735 * 180.02562 * 16 14 13 18 18 N 1.46901 * 109.46769 * 180.02562 * 17 16 14 19 19 C 1.48534 * 111.00172 * 52.60936 * 18 17 16 20 20 C 1.54933 * 103.22824 * 159.71827 * 19 18 17 21 21 C 1.54594 * 102.92252 * 322.58255 * 20 19 18 22 22 C 1.47912 * 110.99681 * 170.00135 * 18 17 16 23 23 H 1.09000 * 109.46986 * 299.99742 * 1 2 3 24 24 H 1.08996 * 109.47407 * 59.99513 * 1 2 3 25 25 H 1.09002 * 109.47070 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46997 * 180.02562 * 3 2 1 27 27 H 1.09000 * 109.47380 * 299.99696 * 3 2 1 28 28 H 1.08999 * 109.47631 * 60.00790 * 3 2 1 29 29 H 0.97000 * 120.00354 * 180.02562 * 7 6 4 30 30 H 1.08998 * 109.47624 * 179.97438 * 12 2 1 31 31 H 1.09002 * 109.47045 * 59.99931 * 12 2 1 32 32 H 0.97005 * 120.00266 * 359.97438 * 13 12 2 33 33 H 1.09001 * 109.46797 * 60.00350 * 16 14 13 34 34 H 1.08992 * 109.47518 * 300.00347 * 16 14 13 35 35 H 1.09002 * 109.47398 * 300.00410 * 17 16 14 36 36 H 1.09001 * 109.47194 * 60.00591 * 17 16 14 37 37 H 1.08997 * 110.66294 * 278.15766 * 19 18 17 38 38 H 1.09001 * 110.66815 * 41.27720 * 19 18 17 39 39 H 1.09002 * 110.72385 * 204.22928 * 20 19 18 40 40 H 1.09000 * 110.72461 * 80.94436 * 20 19 18 41 41 H 1.08997 * 110.31096 * 263.04565 * 21 20 19 42 42 H 1.09001 * 110.30483 * 140.87303 * 21 20 19 43 43 H 1.08997 * 109.91505 * 333.51116 * 22 18 17 44 44 H 1.08999 * 109.91449 * 94.60846 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6992 -0.2393 -2.4828 7 7 0.9435 0.8303 -2.6034 8 14 2.3212 -1.1203 -4.0080 9 1 1.3426 -2.1615 -4.4120 10 1 2.4864 -0.1412 -5.1123 11 1 3.6292 -1.7583 -3.7123 12 6 2.0401 -0.7213 1.2492 13 7 1.5518 -0.0307 2.4454 14 6 1.8770 -0.4915 3.6695 15 8 2.5743 -1.4775 3.7807 16 6 1.3752 0.2192 4.9000 17 6 1.8852 -0.5021 6.1491 18 7 1.3954 0.1903 7.3486 19 6 -0.0785 0.3666 7.2971 20 6 -0.4600 0.5983 8.7807 21 6 0.4938 -0.3556 9.5359 22 6 1.6640 -0.6049 8.5665 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 3.1300 1.4425 -0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6768 1.9563 0.8900 29 1 0.7088 1.1615 -3.4844 30 1 3.1301 -0.7217 1.2490 31 1 1.6768 -1.7489 1.2492 32 1 0.9944 0.7582 2.3565 33 1 0.2852 0.2200 4.8999 34 1 1.7391 1.2466 4.9001 35 1 1.5215 -1.5297 6.1493 36 1 2.9752 -0.5025 6.1490 37 1 -0.3412 1.2344 6.6922 38 1 -0.5602 -0.5321 6.9117 39 1 -1.4999 0.3245 8.9589 40 1 -0.2778 1.6336 9.0687 41 1 -0.0127 -1.2928 9.7664 42 1 0.8540 0.1156 10.4505 43 1 1.7180 -1.6639 8.3140 44 1 2.6013 -0.2834 9.0206 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000700858160.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:06:07 Heat of formation + Delta-G solvation = -50.049077 kcal Electronic energy + Delta-G solvation = -20773.571081 eV Core-core repulsion = 17725.104294 eV Total energy + Delta-G solvation = -3048.466787 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.63993 -38.72226 -36.38505 -33.42306 -33.26015 -30.94861 -29.59103 -28.81547 -25.73218 -25.68884 -25.03485 -23.34190 -21.18187 -20.91196 -19.74510 -18.75896 -17.10160 -16.29036 -15.88595 -15.54467 -15.42739 -15.01603 -14.57495 -14.24310 -13.93236 -13.30579 -13.06263 -12.98798 -12.80336 -12.43309 -12.19060 -11.92437 -11.62771 -11.46416 -11.37729 -11.29782 -11.19456 -11.00401 -10.86385 -10.79253 -10.69782 -10.38931 -10.20823 -9.63956 -9.55341 -9.22429 -8.79058 -8.59305 -8.45109 -8.30477 -6.02650 -4.12746 3.07093 3.27885 3.34883 3.38627 3.55637 4.05422 4.39537 4.43844 4.46810 4.73671 4.95089 5.06046 5.09311 5.24100 5.25234 5.30243 5.44289 5.53510 5.58737 5.59990 5.73515 5.76158 5.89301 5.95131 6.01009 6.24139 6.32984 6.50680 6.70273 6.78272 6.82070 6.86313 6.93391 7.01392 7.04442 7.35132 7.55192 7.68973 8.00555 8.06190 8.15612 8.38227 8.71683 8.88218 9.53137 10.98769 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.049348 B = 0.003138 C = 0.003044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 567.268149 B = 8919.994687 C = 9196.615959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.056 3.944 3 C -0.131 4.131 4 C -0.506 4.506 5 H 0.057 0.943 6 C 0.066 3.934 7 N -0.886 5.886 8 Si 0.893 3.107 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.274 1.274 12 C 0.131 3.869 13 N -0.717 5.717 14 C 0.505 3.495 15 O -0.556 6.556 16 C -0.141 4.141 17 C 0.065 3.935 18 N -0.520 5.520 19 C 0.028 3.972 20 C -0.124 4.124 21 C -0.131 4.131 22 C 0.035 3.965 23 H 0.006 0.994 24 H 0.085 0.915 25 H 0.026 0.974 26 H 0.026 0.974 27 H 0.085 0.915 28 H 0.006 0.994 29 H 0.260 0.740 30 H 0.054 0.946 31 H 0.053 0.947 32 H 0.398 0.602 33 H 0.089 0.911 34 H 0.099 0.901 35 H 0.044 0.956 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.046 0.954 39 H 0.070 0.930 40 H 0.074 0.926 41 H 0.065 0.935 42 H 0.071 0.929 43 H 0.046 0.954 44 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.506 1.660 19.089 19.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.055 3.945 3 C -0.189 4.189 4 C -0.545 4.545 5 H 0.075 0.925 6 C -0.135 4.135 7 N -0.525 5.525 8 Si 0.721 3.279 9 H -0.207 1.207 10 H -0.212 1.212 11 H -0.199 1.199 12 C 0.009 3.991 13 N -0.367 5.367 14 C 0.290 3.710 15 O -0.435 6.435 16 C -0.182 4.182 17 C -0.064 4.064 18 N -0.244 5.244 19 C -0.099 4.099 20 C -0.162 4.162 21 C -0.170 4.170 22 C -0.093 4.093 23 H 0.025 0.975 24 H 0.104 0.896 25 H 0.045 0.955 26 H 0.046 0.954 27 H 0.104 0.896 28 H 0.025 0.975 29 H 0.070 0.930 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.233 0.767 33 H 0.107 0.893 34 H 0.117 0.883 35 H 0.062 0.938 36 H 0.103 0.897 37 H 0.103 0.897 38 H 0.064 0.936 39 H 0.089 0.911 40 H 0.093 0.907 41 H 0.084 0.916 42 H 0.089 0.911 43 H 0.064 0.936 44 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -2.798 1.561 19.002 19.271 hybrid contribution -0.348 -0.887 -1.045 1.414 sum -3.147 0.674 17.957 18.243 Atomic orbital electron populations 1.21830 0.97794 0.99135 1.00081 1.18352 0.92766 0.92778 0.90587 1.21830 0.98606 0.98335 1.00099 1.20997 1.31474 1.12086 0.89928 0.92460 1.24881 0.94876 0.94905 0.98853 1.69800 1.36739 1.22719 1.23228 0.86573 0.79330 0.79391 0.82591 1.20720 1.21246 1.19902 1.21704 0.98132 0.95742 0.83534 1.46326 1.52590 1.31739 1.06073 1.20495 0.80760 0.84787 0.84971 1.90662 1.38826 1.26946 1.87110 1.21690 1.02285 1.01494 0.92721 1.21995 1.01345 0.95277 0.87751 1.64841 1.12389 1.45042 1.02163 1.23301 0.88464 1.01040 0.97134 1.22482 0.98872 1.00247 0.94618 1.22401 0.96185 0.99700 0.98668 1.22865 0.99145 0.96302 0.91015 0.97496 0.89592 0.95495 0.95436 0.89592 0.97457 0.93002 0.92767 0.92842 0.76690 0.89277 0.88316 0.93816 0.89739 0.89734 0.93588 0.91146 0.90715 0.91607 0.91057 0.93606 0.90313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.94 8.08 37.16 0.30 -2.64 16 2 C 0.06 1.30 0.50 -155.66 -0.08 1.22 16 3 C -0.13 -2.95 8.08 37.16 0.30 -2.65 16 4 C -0.51 -13.32 8.01 -34.44 -0.28 -13.59 16 5 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 6 C 0.07 1.74 5.15 -17.82 -0.09 1.65 16 7 N -0.89 -23.63 9.35 55.43 0.52 -23.11 16 8 Si 0.89 20.77 29.54 -169.99 -5.02 15.75 16 9 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 10 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 12 C 0.13 2.81 4.50 -4.05 -0.02 2.79 16 13 N -0.72 -12.69 4.96 -60.30 -0.30 -12.99 16 14 C 0.50 8.63 7.83 -10.98 -0.09 8.54 16 15 O -0.56 -11.58 15.98 5.56 0.09 -11.49 16 16 C -0.14 -1.77 5.36 -27.88 -0.15 -1.92 16 17 C 0.06 0.81 4.32 -3.82 -0.02 0.80 16 18 N -0.52 -5.67 5.40 -230.44 -1.24 -6.91 16 19 C 0.03 0.26 5.10 -1.90 -0.01 0.25 16 20 C -0.12 -0.95 7.06 -24.87 -0.18 -1.13 16 21 C -0.13 -1.00 6.93 -25.37 -0.18 -1.18 16 22 C 0.03 0.33 6.70 -2.75 -0.02 0.31 16 23 H 0.01 0.12 6.86 -51.93 -0.36 -0.24 16 24 H 0.09 2.14 6.07 -51.93 -0.32 1.82 16 25 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.09 2.14 6.07 -51.93 -0.32 1.83 16 28 H 0.01 0.13 6.86 -51.93 -0.36 -0.23 16 29 H 0.26 6.69 8.31 -40.82 -0.34 6.35 16 30 H 0.05 1.23 8.14 -51.93 -0.42 0.80 16 31 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.40 6.32 6.16 -40.82 -0.25 6.07 16 33 H 0.09 0.97 6.79 -51.93 -0.35 0.62 16 34 H 0.10 1.13 8.14 -51.93 -0.42 0.70 16 35 H 0.04 0.60 7.77 -51.93 -0.40 0.19 16 36 H 0.08 1.16 8.10 -51.93 -0.42 0.74 16 37 H 0.08 0.74 7.66 -51.93 -0.40 0.34 16 38 H 0.05 0.44 8.00 -51.93 -0.42 0.03 16 39 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 43 H 0.05 0.45 7.57 -51.93 -0.39 0.05 16 44 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 339.55 15.07 5.12 5.12 Total: -1.00 -28.56 339.55 -9.08 -37.64 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: -7.75 Total: 3.56 kcal Atomic # 6 Polarization: -7.06 SS G_CDS: -0.50 Total: -7.55 kcal Atomic # 7 Polarization: -42.00 SS G_CDS: -1.02 Total: -43.02 kcal Atomic # 8 Polarization: -11.58 SS G_CDS: 0.09 Total: -11.49 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -28.56 -9.08 -37.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700858160.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.408 kcal (2) G-P(sol) polarization free energy of solvation -28.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds