Wall clock time and date at job start Mon Mar 30 2020 05:09:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47313 * 2 1 4 4 C 1.50700 * 109.46639 * 239.99842 * 2 1 3 5 5 H 1.07999 * 119.99845 * 242.47382 * 4 2 1 6 6 C 1.37873 * 120.00054 * 62.48098 * 4 2 1 7 7 N 1.31518 * 120.00045 * 189.59577 * 6 4 2 8 8 Si 1.86798 * 120.00221 * 9.59195 * 6 4 2 9 9 H 1.48502 * 109.47038 * 92.20678 * 8 6 4 10 10 H 1.48495 * 109.47550 * 212.20771 * 8 6 4 11 11 H 1.48497 * 109.47088 * 332.20965 * 8 6 4 12 12 C 1.52999 * 109.46764 * 120.00303 * 2 1 3 13 13 N 1.46507 * 109.47043 * 299.99103 * 12 2 1 14 14 C 1.34778 * 119.99779 * 180.02562 * 13 12 2 15 15 O 1.21275 * 120.00027 * 355.87376 * 14 13 12 16 16 C 1.50701 * 119.99799 * 175.87693 * 14 13 12 17 17 H 1.09004 * 109.47335 * 60.26480 * 16 14 13 18 18 C 1.52999 * 109.46822 * 300.26977 * 16 14 13 19 19 N 1.46901 * 109.46941 * 174.51115 * 18 16 14 20 20 C 1.52992 * 109.47171 * 180.26830 * 16 14 13 21 21 C 1.53779 * 113.61586 * 279.13538 * 20 16 14 22 22 C 1.53954 * 87.01805 * 220.04583 * 21 20 16 23 23 C 1.53780 * 87.11268 * 25.36333 * 22 21 20 24 24 H 1.09004 * 109.47196 * 311.13228 * 1 2 3 25 25 H 1.09001 * 109.47172 * 71.12565 * 1 2 3 26 26 H 1.08996 * 109.47369 * 191.13124 * 1 2 3 27 27 H 1.09001 * 109.46973 * 180.02562 * 3 2 1 28 28 H 1.09008 * 109.47059 * 300.00043 * 3 2 1 29 29 H 1.08994 * 109.47321 * 60.00030 * 3 2 1 30 30 H 0.96996 * 119.99907 * 179.97438 * 7 6 4 31 31 H 1.09001 * 109.47037 * 179.97438 * 12 2 1 32 32 H 1.08993 * 109.47733 * 59.99591 * 12 2 1 33 33 H 0.97004 * 120.00049 * 0.02562 * 13 12 2 34 34 H 1.09002 * 109.47494 * 54.51249 * 18 16 14 35 35 H 1.09004 * 109.47386 * 294.50773 * 18 16 14 36 36 H 1.00906 * 111.00181 * 174.49684 * 19 18 16 37 37 H 1.00903 * 111.00061 * 298.44660 * 19 18 16 38 38 H 1.09007 * 112.85035 * 50.33272 * 20 16 14 39 39 H 1.08998 * 113.61475 * 334.56448 * 21 20 16 40 40 H 1.08997 * 113.61394 * 105.46948 * 21 20 16 41 41 H 1.09001 * 113.54104 * 270.80697 * 22 21 20 42 42 H 1.09008 * 113.74109 * 139.94731 * 22 21 20 43 43 H 1.08998 * 113.61076 * 220.08337 * 23 22 21 44 44 H 1.09003 * 113.61355 * 89.18709 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0322 -0.7105 -1.2305 5 1 2.6197 -1.6113 -1.1319 6 6 1.7418 -0.2104 -2.4821 7 7 2.0133 -0.9224 -3.5540 8 14 0.9627 1.4785 -2.6554 9 1 2.0276 2.5006 -2.8182 10 1 0.0752 1.4945 -3.8458 11 1 0.1659 1.7832 -1.4399 12 6 2.0399 -0.7213 1.2492 13 7 1.5517 -0.0306 2.4454 14 6 1.8777 -0.4908 3.6695 15 8 2.5120 -1.5183 3.7819 16 6 1.4539 0.2714 4.8986 17 1 0.3663 0.3385 4.9275 18 6 2.0507 1.6795 4.8564 19 7 1.5330 2.4648 5.9848 20 6 1.9532 -0.4571 6.1478 21 6 1.0645 -1.6397 6.5680 22 6 1.2899 -1.1882 8.0225 23 6 1.5397 0.2226 7.4639 24 1 -0.3634 0.6760 0.7741 25 1 -0.3633 0.3324 -0.9724 26 1 -0.3634 -1.0083 0.1984 27 1 3.1301 1.4424 -0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6768 1.9563 0.8899 30 1 1.8086 -0.5707 -4.4344 31 1 3.1299 -0.7218 1.2490 32 1 1.6766 -1.7489 1.2493 33 1 0.9938 0.7580 2.3564 34 1 1.7742 2.1635 3.9197 35 1 3.1367 1.6161 4.9259 36 1 1.9795 3.3684 6.0316 37 1 0.5299 2.5595 5.9293 38 1 3.0138 -0.7039 6.0984 39 1 0.0299 -1.5474 6.2375 40 1 1.4974 -2.6137 6.3401 41 1 2.1688 -1.6362 8.4861 42 1 0.3994 -1.2593 8.6471 43 1 2.3556 0.7498 7.9583 44 1 0.6352 0.8250 7.3788 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000705184698.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:09:51 Heat of formation + Delta-G solvation = -35.420800 kcal Electronic energy + Delta-G solvation = -21588.700577 eV Core-core repulsion = 18540.868120 eV Total energy + Delta-G solvation = -3047.832457 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.31547 -39.45937 -38.22562 -35.86097 -34.87256 -33.40521 -31.08666 -28.03818 -27.59151 -26.92028 -26.23750 -25.31135 -23.34060 -21.09356 -20.91442 -20.22510 -18.42660 -18.00918 -17.10024 -16.91156 -16.58053 -16.29395 -16.05032 -15.52274 -15.19181 -14.89707 -14.68007 -14.51833 -14.12825 -14.04541 -13.94846 -13.77314 -13.20709 -13.03360 -12.91281 -12.41495 -12.38137 -12.15199 -12.02494 -11.98606 -11.78249 -11.37313 -11.13453 -11.07043 -11.00406 -10.69236 -10.62821 -10.33763 -9.97815 -9.38282 -8.30214 -6.34537 1.35928 1.36863 1.49823 1.69817 2.31882 2.34272 3.06444 3.54709 3.73315 3.81377 3.94372 4.05381 4.13219 4.28427 4.31162 4.33335 4.39168 4.43249 4.52393 4.75751 4.78575 4.83492 4.86143 4.89798 4.93621 4.99322 5.04299 5.08601 5.14352 5.17297 5.20531 5.41444 5.43413 5.54174 5.56363 5.71988 5.77645 5.80176 6.28785 6.28905 6.66200 6.72051 6.73094 7.31236 7.35469 8.87252 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.034326 B = 0.004407 C = 0.004105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.510468 B = 6352.330965 C = 6819.728095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.027 3.973 3 C -0.145 4.145 4 C -0.517 4.517 5 H 0.024 0.976 6 C 0.012 3.988 7 N -0.951 5.951 8 Si 0.943 3.057 9 H -0.284 1.284 10 H -0.314 1.314 11 H -0.193 1.193 12 C 0.157 3.843 13 N -0.711 5.711 14 C 0.507 3.493 15 O -0.586 6.586 16 C -0.084 4.084 17 H 0.116 0.884 18 C 0.079 3.921 19 N -0.838 5.838 20 C -0.086 4.086 21 C -0.142 4.142 22 C -0.149 4.149 23 C -0.082 4.082 24 H 0.068 0.932 25 H 0.045 0.955 26 H 0.039 0.961 27 H 0.044 0.956 28 H 0.037 0.963 29 H 0.075 0.925 30 H 0.264 0.736 31 H 0.039 0.961 32 H 0.036 0.964 33 H 0.410 0.590 34 H 0.043 0.957 35 H 0.062 0.938 36 H 0.352 0.648 37 H 0.350 0.650 38 H 0.062 0.938 39 H 0.082 0.918 40 H 0.039 0.961 41 H 0.070 0.930 42 H 0.076 0.924 43 H 0.064 0.936 44 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.231 11.178 21.949 25.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.026 3.974 3 C -0.201 4.201 4 C -0.555 4.555 5 H 0.042 0.958 6 C -0.184 4.184 7 N -0.591 5.591 8 Si 0.771 3.229 9 H -0.212 1.212 10 H -0.243 1.243 11 H -0.116 1.116 12 C 0.033 3.967 13 N -0.363 5.363 14 C 0.294 3.706 15 O -0.466 6.466 16 C -0.106 4.106 17 H 0.134 0.866 18 C -0.053 4.053 19 N -0.370 5.370 20 C -0.105 4.105 21 C -0.179 4.179 22 C -0.186 4.186 23 C -0.119 4.119 24 H 0.086 0.914 25 H 0.064 0.936 26 H 0.058 0.942 27 H 0.063 0.937 28 H 0.055 0.945 29 H 0.093 0.907 30 H 0.073 0.927 31 H 0.057 0.943 32 H 0.054 0.946 33 H 0.248 0.752 34 H 0.061 0.939 35 H 0.080 0.920 36 H 0.167 0.833 37 H 0.164 0.836 38 H 0.081 0.919 39 H 0.101 0.899 40 H 0.058 0.942 41 H 0.089 0.911 42 H 0.095 0.905 43 H 0.082 0.918 44 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -5.469 9.859 22.304 24.992 hybrid contribution -0.135 0.663 -2.083 2.190 sum -5.604 10.522 20.221 23.474 Atomic orbital electron populations 1.22226 0.95974 1.00590 1.00896 1.18663 0.93836 0.93258 0.91689 1.22288 1.00882 0.96562 1.00390 1.21072 1.33527 1.10140 0.90769 0.95798 1.25932 0.95729 1.01712 0.95058 1.70103 1.50623 1.39430 0.98932 0.86391 0.79144 0.79328 0.77989 1.21176 1.24329 1.11607 1.20992 0.97094 0.94945 0.83678 1.46105 1.53115 1.32039 1.05090 1.21352 0.78703 0.85115 0.85438 1.90667 1.42135 1.26454 1.87378 1.21385 1.02829 0.95536 0.90847 0.86633 1.21517 0.99505 0.90983 0.93273 1.58720 1.11027 1.22479 1.44732 1.22192 0.98563 0.96200 0.93534 1.22982 0.99757 0.97586 0.97579 1.22965 1.01790 0.98527 0.95367 1.22627 1.02270 0.94229 0.92799 0.91356 0.93633 0.94182 0.93665 0.94519 0.90655 0.92710 0.94290 0.94600 0.75239 0.93910 0.91989 0.83347 0.83609 0.91909 0.89927 0.94155 0.91126 0.90497 0.91769 0.88137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.14 7.41 71.98 0.53 -4.61 16 2 C 0.03 1.11 0.50 -52.93 -0.03 1.09 16 3 C -0.14 -5.21 7.50 71.98 0.54 -4.67 16 4 C -0.52 -28.63 8.62 25.60 0.22 -28.41 16 5 H 0.02 1.52 7.99 -2.91 -0.02 1.49 16 6 C 0.01 0.71 5.37 84.65 0.45 1.16 16 7 N -0.95 -59.43 13.96 21.45 0.30 -59.13 16 8 Si 0.94 41.93 22.79 68.60 1.56 43.49 16 9 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 10 H -0.31 -14.45 7.11 99.48 0.71 -13.74 16 11 H -0.19 -7.03 4.40 99.48 0.44 -6.60 16 12 C 0.16 6.28 4.48 86.38 0.39 6.66 16 13 N -0.71 -21.08 4.82 -463.06 -2.23 -23.31 16 14 C 0.51 15.44 7.13 87.66 0.62 16.06 16 15 O -0.59 -23.73 15.83 -3.01 -0.05 -23.78 16 16 C -0.08 -1.72 2.21 -11.54 -0.03 -1.74 16 17 H 0.12 1.85 7.98 -2.39 -0.02 1.83 16 18 C 0.08 1.25 6.09 86.30 0.53 1.77 16 19 N -0.84 -8.51 6.89 -186.71 -1.29 -9.79 16 20 C -0.09 -1.91 2.51 -10.27 -0.03 -1.94 16 21 C -0.14 -3.17 7.54 31.18 0.23 -2.94 16 22 C -0.15 -2.62 8.09 31.18 0.25 -2.37 16 23 C -0.08 -1.34 5.88 31.12 0.18 -1.16 16 24 H 0.07 1.89 7.17 -2.38 -0.02 1.87 16 25 H 0.04 1.77 4.23 -2.39 -0.01 1.76 16 26 H 0.04 1.51 8.10 -2.39 -0.02 1.49 16 27 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 28 H 0.04 1.38 2.32 -2.38 -0.01 1.37 16 29 H 0.07 2.01 6.86 -2.39 -0.02 1.99 16 30 H 0.26 15.51 8.31 -92.71 -0.77 14.74 16 31 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.04 1.60 8.14 -2.39 -0.02 1.59 16 33 H 0.41 9.38 5.76 -92.71 -0.53 8.85 16 34 H 0.04 0.60 7.49 -2.39 -0.02 0.59 16 35 H 0.06 1.20 8.14 -2.38 -0.02 1.18 16 36 H 0.35 2.69 9.08 -89.69 -0.81 1.88 16 37 H 0.35 2.41 8.91 -89.69 -0.80 1.61 16 38 H 0.06 1.75 7.91 -2.38 -0.02 1.73 16 39 H 0.08 1.68 7.99 -2.39 -0.02 1.66 16 40 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 41 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 42 H 0.08 1.13 8.14 -2.38 -0.02 1.11 16 43 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 44 H 0.10 1.35 7.09 -2.39 -0.02 1.33 16 Total: -1.00 -71.64 328.55 0.77 -70.87 By element: Atomic # 1 Polarization: 24.14 SS G_CDS: -1.41 Total: 22.73 kcal Atomic # 6 Polarization: -24.96 SS G_CDS: 3.88 Total: -21.08 kcal Atomic # 7 Polarization: -89.02 SS G_CDS: -3.22 Total: -92.23 kcal Atomic # 8 Polarization: -23.73 SS G_CDS: -0.05 Total: -23.78 kcal Atomic # 14 Polarization: 41.93 SS G_CDS: 1.56 Total: 43.49 kcal Total: -71.64 0.77 -70.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705184698.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.448 kcal (2) G-P(sol) polarization free energy of solvation -71.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds