Wall clock time and date at job start Mon Mar 30 2020 05:09:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46973 * 2 1 4 4 C 1.50698 * 109.47138 * 240.00217 * 2 1 3 5 5 H 1.07998 * 119.99750 * 240.00309 * 4 2 1 6 6 C 1.37882 * 120.00253 * 59.99590 * 4 2 1 7 7 N 1.31513 * 119.99562 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 119.99846 * 180.02562 * 6 4 2 9 9 H 1.48492 * 109.47251 * 0.02562 * 8 6 4 10 10 H 1.48495 * 109.47021 * 120.00658 * 8 6 4 11 11 H 1.48508 * 109.46840 * 240.00079 * 8 6 4 12 12 C 1.52994 * 109.46785 * 119.99997 * 2 1 3 13 13 N 1.46501 * 109.47155 * 299.99723 * 12 2 1 14 14 C 1.34776 * 119.99499 * 180.02562 * 13 12 2 15 15 O 1.21279 * 120.00572 * 0.02562 * 14 13 12 16 16 C 1.50705 * 119.99804 * 180.02562 * 14 13 12 17 17 H 1.08996 * 109.47273 * 300.00772 * 16 14 13 18 18 C 1.53006 * 109.46896 * 60.00159 * 16 14 13 19 19 N 1.46899 * 109.47019 * 185.00020 * 18 16 14 20 20 C 1.52994 * 109.47459 * 179.97438 * 16 14 13 21 21 C 1.53782 * 113.61734 * 180.02562 * 20 16 14 22 22 C 1.53781 * 87.08260 * 220.02231 * 21 20 16 23 23 C 1.53786 * 87.17350 * 25.39213 * 22 21 20 24 24 H 1.08994 * 109.47196 * 300.00190 * 1 2 3 25 25 H 1.09006 * 109.47251 * 60.00179 * 1 2 3 26 26 H 1.08998 * 109.46960 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47206 * 180.02562 * 3 2 1 28 28 H 1.09006 * 109.46986 * 299.99983 * 3 2 1 29 29 H 1.09001 * 109.47079 * 59.99583 * 3 2 1 30 30 H 0.97003 * 119.99425 * 179.97438 * 7 6 4 31 31 H 1.09000 * 109.46590 * 180.02562 * 12 2 1 32 32 H 1.08996 * 109.47659 * 60.00444 * 12 2 1 33 33 H 0.96995 * 120.00495 * 0.02562 * 13 12 2 34 34 H 1.08997 * 109.47247 * 305.00193 * 18 16 14 35 35 H 1.09004 * 109.47089 * 64.99694 * 18 16 14 36 36 H 1.00897 * 111.00077 * 56.05198 * 19 18 16 37 37 H 1.00899 * 110.99793 * 180.02562 * 19 18 16 38 38 H 1.09002 * 112.84929 * 311.20158 * 20 16 14 39 39 H 1.09001 * 113.61250 * 105.47049 * 21 20 16 40 40 H 1.08997 * 113.61225 * 334.56890 * 21 20 16 41 41 H 1.09002 * 113.61445 * 139.98212 * 22 21 20 42 42 H 1.09002 * 113.61408 * 270.79943 * 22 21 20 43 43 H 1.08993 * 113.61491 * 89.15923 * 23 22 21 44 44 H 1.09000 * 113.61138 * 220.06261 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6993 -0.2393 -2.4828 7 7 0.9435 0.8302 -2.6034 8 14 2.3214 -1.1204 -4.0080 9 1 3.1455 -2.2876 -3.6038 10 1 1.1661 -1.5866 -4.8161 11 1 3.1467 -0.1873 -4.8165 12 6 2.0400 -0.7212 1.2492 13 7 1.5516 -0.0306 2.4454 14 6 1.8777 -0.4908 3.6694 15 8 2.5756 -1.4764 3.7808 16 6 1.3749 0.2193 4.9000 17 1 1.7374 1.2472 4.8999 18 6 -0.1552 0.2181 4.9000 19 7 -0.6454 1.0122 6.0345 20 6 1.8849 -0.5019 6.1492 21 6 1.4251 0.1464 7.4657 22 6 2.8361 -0.1377 8.0070 23 6 3.3193 -0.1088 6.5473 24 1 -0.3633 0.5138 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1300 1.4425 -0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6766 1.9563 0.8900 30 1 0.7095 1.1618 -3.4844 31 1 3.1300 -0.7208 1.2494 32 1 1.6767 -1.7489 1.2492 33 1 0.9937 0.7579 2.3564 34 1 -0.5189 0.6521 3.9687 35 1 -0.5177 -0.8059 4.9896 36 1 -0.2706 1.9486 6.0092 37 1 -1.6540 1.0265 6.0569 38 1 1.7212 -1.5789 6.1126 39 1 0.6407 -0.4120 7.9767 40 1 1.1985 1.2085 7.3735 41 1 3.2407 0.6701 8.6168 42 1 2.9338 -1.1148 8.4801 43 1 3.6114 0.8834 6.2036 44 1 4.0619 -0.8730 6.3180 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000705184713.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:09:55 Heat of formation + Delta-G solvation = -33.524612 kcal Electronic energy + Delta-G solvation = -21488.093798 eV Core-core repulsion = 18440.343565 eV Total energy + Delta-G solvation = -3047.750232 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.04435 -38.16785 -36.27632 -34.96455 -33.19403 -31.02084 -29.90845 -25.76023 -25.71729 -25.34574 -25.05720 -24.31533 -22.17095 -19.75903 -19.33042 -18.79760 -17.10282 -15.90341 -15.80326 -15.52624 -15.12758 -14.91774 -14.69528 -14.12373 -13.93185 -13.41342 -13.10458 -12.86968 -12.63231 -12.26189 -12.21246 -12.13507 -11.45785 -11.41645 -11.21442 -11.11348 -10.88707 -10.68200 -10.45602 -10.41159 -10.22272 -10.16114 -10.08214 -9.66124 -9.49952 -9.16457 -8.79659 -8.71157 -8.45835 -8.30241 -6.04284 -4.14125 3.07057 3.25739 3.34426 3.39155 3.74691 4.37784 4.43549 4.66423 4.80165 4.83351 5.02904 5.16819 5.22685 5.23308 5.37250 5.51018 5.72142 5.79055 5.89138 5.93223 6.05687 6.11938 6.22908 6.28188 6.32185 6.45489 6.48996 6.68491 6.77589 6.78643 6.90760 6.92686 6.99253 7.04200 7.23689 7.33227 7.52693 7.67504 7.98154 8.06121 8.15291 8.36791 8.74164 8.87242 9.51868 10.97167 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.035949 B = 0.004058 C = 0.003827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.694111 B = 6897.586292 C = 7315.454007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.055 3.945 3 C -0.130 4.130 4 C -0.505 4.505 5 H 0.058 0.942 6 C 0.066 3.934 7 N -0.886 5.886 8 Si 0.893 3.107 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.284 1.284 12 C 0.132 3.868 13 N -0.718 5.718 14 C 0.507 3.493 15 O -0.546 6.546 16 C -0.098 4.098 17 H 0.090 0.910 18 C 0.072 3.928 19 N -0.841 5.841 20 C -0.079 4.079 21 C -0.101 4.101 22 C -0.154 4.154 23 C -0.134 4.134 24 H 0.004 0.996 25 H 0.085 0.915 26 H 0.026 0.974 27 H 0.026 0.974 28 H 0.085 0.915 29 H 0.005 0.995 30 H 0.259 0.741 31 H 0.053 0.947 32 H 0.053 0.947 33 H 0.395 0.605 34 H 0.033 0.967 35 H 0.077 0.923 36 H 0.339 0.661 37 H 0.340 0.660 38 H 0.091 0.909 39 H 0.063 0.937 40 H 0.084 0.916 41 H 0.060 0.940 42 H 0.073 0.927 43 H 0.073 0.927 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.635 3.280 16.094 16.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.054 3.946 3 C -0.187 4.187 4 C -0.543 4.543 5 H 0.076 0.924 6 C -0.135 4.135 7 N -0.525 5.525 8 Si 0.721 3.279 9 H -0.197 1.197 10 H -0.211 1.211 11 H -0.210 1.210 12 C 0.009 3.991 13 N -0.369 5.369 14 C 0.292 3.708 15 O -0.424 6.424 16 C -0.119 4.119 17 H 0.108 0.892 18 C -0.059 4.059 19 N -0.370 5.370 20 C -0.098 4.098 21 C -0.139 4.139 22 C -0.192 4.192 23 C -0.172 4.172 24 H 0.023 0.977 25 H 0.104 0.896 26 H 0.045 0.955 27 H 0.046 0.954 28 H 0.104 0.896 29 H 0.024 0.976 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.230 0.770 34 H 0.051 0.949 35 H 0.095 0.905 36 H 0.151 0.849 37 H 0.153 0.847 38 H 0.109 0.891 39 H 0.082 0.918 40 H 0.102 0.898 41 H 0.079 0.921 42 H 0.092 0.908 43 H 0.092 0.908 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -1.835 2.128 16.442 16.681 hybrid contribution -0.352 0.565 -1.818 1.936 sum -2.187 2.694 14.625 15.031 Atomic orbital electron populations 1.21816 0.97807 0.99120 0.99941 1.18361 0.92756 0.92754 0.90693 1.21821 0.98586 0.98368 0.99975 1.21033 1.31356 1.12068 0.89888 0.92392 1.24884 0.94858 0.94928 0.98872 1.69814 1.36795 1.22790 1.23102 0.86516 0.78649 0.79775 0.82967 1.19743 1.21060 1.21050 1.21692 0.98094 0.95752 0.83558 1.46369 1.52595 1.31766 1.06156 1.20484 0.80825 0.84825 0.84659 1.90655 1.38353 1.26518 1.86893 1.21415 0.95974 1.00582 0.93975 0.89186 1.21679 0.93142 0.99267 0.91855 1.58912 1.13550 1.18664 1.45925 1.22233 0.95546 0.99885 0.92090 1.22736 0.94800 1.01302 0.95051 1.22947 0.98578 1.01245 0.96418 1.22927 0.97071 1.01316 0.95842 0.97679 0.89629 0.95463 0.95449 0.89619 0.97631 0.93082 0.92827 0.92820 0.76969 0.94864 0.90469 0.84903 0.84704 0.89094 0.91786 0.89787 0.92141 0.90829 0.90824 0.91588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.88 8.08 37.16 0.30 -2.58 16 2 C 0.06 1.27 0.50 -155.66 -0.08 1.19 16 3 C -0.13 -2.91 8.08 37.16 0.30 -2.61 16 4 C -0.50 -13.21 8.01 -34.44 -0.28 -13.49 16 5 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 6 C 0.07 1.72 5.15 -17.82 -0.09 1.63 16 7 N -0.89 -23.49 9.35 55.43 0.52 -22.97 16 8 Si 0.89 20.69 29.54 -169.99 -5.02 15.67 16 9 H -0.27 -6.34 7.11 56.52 0.40 -5.93 16 10 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 12 C 0.13 2.80 4.50 -4.04 -0.02 2.78 16 13 N -0.72 -12.61 4.82 -60.30 -0.29 -12.90 16 14 C 0.51 8.66 7.15 -10.98 -0.08 8.58 16 15 O -0.55 -11.36 15.84 5.56 0.09 -11.27 16 16 C -0.10 -1.23 2.20 -91.77 -0.20 -1.43 16 17 H 0.09 1.03 7.95 -51.93 -0.41 0.61 16 18 C 0.07 0.77 6.09 -3.82 -0.02 0.75 16 19 N -0.84 -6.85 6.92 -10.37 -0.07 -6.92 16 20 C -0.08 -0.99 2.54 -89.71 -0.23 -1.22 16 21 C -0.10 -1.04 5.86 -25.92 -0.15 -1.20 16 22 C -0.15 -1.59 8.08 -25.92 -0.21 -1.80 16 23 C -0.13 -1.65 7.62 -25.82 -0.20 -1.84 16 24 H 0.00 0.08 6.86 -51.93 -0.36 -0.27 16 25 H 0.09 2.12 6.07 -51.93 -0.32 1.80 16 26 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.09 2.12 6.07 -51.93 -0.32 1.81 16 29 H 0.00 0.09 6.86 -51.93 -0.36 -0.26 16 30 H 0.26 6.62 8.31 -40.82 -0.34 6.28 16 31 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 32 H 0.05 1.21 8.14 -51.93 -0.42 0.78 16 33 H 0.40 6.28 5.52 -40.82 -0.23 6.06 16 34 H 0.03 0.36 7.43 -51.93 -0.39 -0.02 16 35 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.34 2.38 8.57 -39.29 -0.34 2.04 16 37 H 0.34 2.31 9.08 -39.29 -0.36 1.96 16 38 H 0.09 1.32 7.86 -51.93 -0.41 0.92 16 39 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.08 0.80 6.78 -51.93 -0.35 0.45 16 41 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.07 0.87 7.97 -51.93 -0.41 0.45 16 44 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 338.01 15.07 5.09 5.09 Total: -1.00 -28.03 338.01 -8.22 -36.25 By element: Atomic # 1 Polarization: 15.86 SS G_CDS: -7.58 Total: 8.28 kcal Atomic # 6 Polarization: -10.28 SS G_CDS: -0.95 Total: -11.24 kcal Atomic # 7 Polarization: -42.95 SS G_CDS: 0.16 Total: -42.79 kcal Atomic # 8 Polarization: -11.36 SS G_CDS: 0.09 Total: -11.27 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -28.03 -8.22 -36.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705184713.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.727 kcal (2) G-P(sol) polarization free energy of solvation -28.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds