Wall clock time and date at job start Mon Mar 30 2020 05:09:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46973 * 2 1 4 4 C 1.50698 * 109.47138 * 240.00217 * 2 1 3 5 5 H 1.07998 * 119.99750 * 240.00309 * 4 2 1 6 6 C 1.37882 * 120.00253 * 59.99590 * 4 2 1 7 7 N 1.31513 * 119.99562 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 119.99846 * 180.02562 * 6 4 2 9 9 H 1.48492 * 109.47251 * 0.02562 * 8 6 4 10 10 H 1.48495 * 109.47021 * 120.00658 * 8 6 4 11 11 H 1.48508 * 109.46840 * 240.00079 * 8 6 4 12 12 C 1.52994 * 109.46785 * 119.99997 * 2 1 3 13 13 N 1.46501 * 109.47155 * 299.99723 * 12 2 1 14 14 C 1.34776 * 119.99499 * 180.02562 * 13 12 2 15 15 O 1.21279 * 120.00572 * 0.02562 * 14 13 12 16 16 C 1.50705 * 119.99804 * 180.02562 * 14 13 12 17 17 H 1.08996 * 109.47273 * 300.00772 * 16 14 13 18 18 C 1.53006 * 109.46896 * 60.00159 * 16 14 13 19 19 N 1.46899 * 109.47019 * 185.00020 * 18 16 14 20 20 C 1.52994 * 109.47459 * 179.97438 * 16 14 13 21 21 C 1.53782 * 113.61734 * 180.02562 * 20 16 14 22 22 C 1.53781 * 87.08260 * 220.02231 * 21 20 16 23 23 C 1.53786 * 87.17350 * 25.39213 * 22 21 20 24 24 H 1.08994 * 109.47196 * 300.00190 * 1 2 3 25 25 H 1.09006 * 109.47251 * 60.00179 * 1 2 3 26 26 H 1.08998 * 109.46960 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47206 * 180.02562 * 3 2 1 28 28 H 1.09006 * 109.46986 * 299.99983 * 3 2 1 29 29 H 1.09001 * 109.47079 * 59.99583 * 3 2 1 30 30 H 0.97003 * 119.99425 * 179.97438 * 7 6 4 31 31 H 1.09000 * 109.46590 * 180.02562 * 12 2 1 32 32 H 1.08996 * 109.47659 * 60.00444 * 12 2 1 33 33 H 0.96995 * 120.00495 * 0.02562 * 13 12 2 34 34 H 1.08997 * 109.47247 * 305.00193 * 18 16 14 35 35 H 1.09004 * 109.47089 * 64.99694 * 18 16 14 36 36 H 1.00897 * 111.00077 * 56.05198 * 19 18 16 37 37 H 1.00899 * 110.99793 * 180.02562 * 19 18 16 38 38 H 1.09002 * 112.84929 * 311.20158 * 20 16 14 39 39 H 1.09001 * 113.61250 * 105.47049 * 21 20 16 40 40 H 1.08997 * 113.61225 * 334.56890 * 21 20 16 41 41 H 1.09002 * 113.61445 * 139.98212 * 22 21 20 42 42 H 1.09002 * 113.61408 * 270.79943 * 22 21 20 43 43 H 1.08993 * 113.61491 * 89.15923 * 23 22 21 44 44 H 1.09000 * 113.61138 * 220.06261 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6993 -0.2393 -2.4828 7 7 0.9435 0.8302 -2.6034 8 14 2.3214 -1.1204 -4.0080 9 1 3.1455 -2.2876 -3.6038 10 1 1.1661 -1.5866 -4.8161 11 1 3.1467 -0.1873 -4.8165 12 6 2.0400 -0.7212 1.2492 13 7 1.5516 -0.0306 2.4454 14 6 1.8777 -0.4908 3.6694 15 8 2.5756 -1.4764 3.7808 16 6 1.3749 0.2193 4.9000 17 1 1.7374 1.2472 4.8999 18 6 -0.1552 0.2181 4.9000 19 7 -0.6454 1.0122 6.0345 20 6 1.8849 -0.5019 6.1492 21 6 1.4251 0.1464 7.4657 22 6 2.8361 -0.1377 8.0070 23 6 3.3193 -0.1088 6.5473 24 1 -0.3633 0.5138 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1300 1.4425 -0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6766 1.9563 0.8900 30 1 0.7095 1.1618 -3.4844 31 1 3.1300 -0.7208 1.2494 32 1 1.6767 -1.7489 1.2492 33 1 0.9937 0.7579 2.3564 34 1 -0.5189 0.6521 3.9687 35 1 -0.5177 -0.8059 4.9896 36 1 -0.2706 1.9486 6.0092 37 1 -1.6540 1.0265 6.0569 38 1 1.7212 -1.5789 6.1126 39 1 0.6407 -0.4120 7.9767 40 1 1.1985 1.2085 7.3735 41 1 3.2407 0.6701 8.6168 42 1 2.9338 -1.1148 8.4801 43 1 3.6114 0.8834 6.2036 44 1 4.0619 -0.8730 6.3180 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000705184713.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:09:54 Heat of formation + Delta-G solvation = -51.115708 kcal Electronic energy + Delta-G solvation = -21488.856605 eV Core-core repulsion = 18440.343565 eV Total energy + Delta-G solvation = -3048.513040 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.29183 -39.38563 -37.99145 -35.86819 -34.87958 -32.75986 -30.98382 -27.58588 -27.49776 -26.80428 -26.23451 -25.30001 -23.33690 -21.07809 -20.62887 -20.23443 -18.46222 -17.72533 -16.95194 -16.62356 -16.58345 -16.22618 -16.03194 -15.43020 -15.07912 -14.83697 -14.50743 -14.33562 -14.01607 -13.94704 -13.26896 -13.16626 -13.11666 -13.01683 -12.70367 -12.59500 -12.39218 -12.27662 -12.15500 -12.06306 -11.50619 -11.37160 -11.28321 -11.12050 -10.99478 -10.75624 -10.57565 -10.41554 -9.92920 -9.40615 -8.04203 -6.19719 1.39790 1.44178 1.53494 1.70472 2.32166 2.49405 3.19448 3.53920 3.71705 3.80946 3.93344 4.11275 4.26279 4.31147 4.36829 4.43847 4.49106 4.54632 4.70260 4.80622 4.89125 4.97495 4.99688 5.03326 5.07974 5.09771 5.13846 5.17276 5.19879 5.35985 5.42937 5.55844 5.59199 5.65140 5.65760 5.79514 6.13390 6.19825 6.25913 6.42088 6.69059 6.70536 6.84391 7.35321 7.48119 8.94788 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.035949 B = 0.004058 C = 0.003827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.694111 B = 6897.586292 C = 7315.454007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.050 3.950 3 C -0.119 4.119 4 C -0.529 4.529 5 H 0.042 0.958 6 C 0.029 3.971 7 N -0.898 5.898 8 Si 0.944 3.056 9 H -0.277 1.277 10 H -0.281 1.281 11 H -0.281 1.281 12 C 0.148 3.852 13 N -0.710 5.710 14 C 0.505 3.495 15 O -0.587 6.587 16 C -0.086 4.086 17 H 0.113 0.887 18 C 0.080 3.920 19 N -0.835 5.835 20 C -0.086 4.086 21 C -0.084 4.084 22 C -0.147 4.147 23 C -0.141 4.141 24 H 0.037 0.963 25 H 0.062 0.938 26 H 0.017 0.983 27 H 0.017 0.983 28 H 0.063 0.937 29 H 0.037 0.963 30 H 0.260 0.740 31 H 0.035 0.965 32 H 0.035 0.965 33 H 0.407 0.593 34 H 0.037 0.963 35 H 0.062 0.938 36 H 0.350 0.650 37 H 0.352 0.648 38 H 0.064 0.936 39 H 0.064 0.936 40 H 0.100 0.900 41 H 0.077 0.923 42 H 0.072 0.928 43 H 0.082 0.918 44 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.516 4.824 17.560 18.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.050 3.950 3 C -0.177 4.177 4 C -0.568 4.568 5 H 0.060 0.940 6 C -0.171 4.171 7 N -0.537 5.537 8 Si 0.771 3.229 9 H -0.202 1.202 10 H -0.206 1.206 11 H -0.206 1.206 12 C 0.024 3.976 13 N -0.362 5.362 14 C 0.292 3.708 15 O -0.468 6.468 16 C -0.107 4.107 17 H 0.131 0.869 18 C -0.052 4.052 19 N -0.367 5.367 20 C -0.105 4.105 21 C -0.121 4.121 22 C -0.185 4.185 23 C -0.179 4.179 24 H 0.056 0.944 25 H 0.081 0.919 26 H 0.036 0.964 27 H 0.036 0.964 28 H 0.081 0.919 29 H 0.056 0.944 30 H 0.070 0.930 31 H 0.053 0.947 32 H 0.053 0.947 33 H 0.244 0.756 34 H 0.055 0.945 35 H 0.081 0.919 36 H 0.163 0.837 37 H 0.166 0.834 38 H 0.082 0.918 39 H 0.083 0.917 40 H 0.118 0.882 41 H 0.096 0.904 42 H 0.090 0.910 43 H 0.100 0.900 44 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -2.743 3.703 17.923 18.506 hybrid contribution -0.057 0.058 -2.256 2.257 sum -2.799 3.761 15.667 16.353 Atomic orbital electron populations 1.21646 0.97003 0.98588 1.00354 1.18365 0.93326 0.93051 0.90284 1.21656 0.97861 0.97794 1.00385 1.21300 1.31675 1.12118 0.91669 0.93966 1.25435 0.95125 0.95595 1.00903 1.69908 1.36997 1.23231 1.23547 0.85719 0.78156 0.78729 0.80278 1.20159 1.20649 1.20644 1.21233 0.96817 0.95009 0.84578 1.46191 1.52732 1.31905 1.05366 1.21326 0.79709 0.84265 0.85469 1.90642 1.40157 1.28519 1.87462 1.21397 0.97348 1.00830 0.91157 0.86933 1.21509 0.91471 0.99166 0.93070 1.58807 1.14524 1.19117 1.44289 1.22239 0.96250 0.98655 0.93381 1.22658 0.94681 1.01877 0.92899 1.22924 0.98383 1.01892 0.95270 1.22989 0.96297 1.00937 0.97667 0.94445 0.91887 0.96423 0.96424 0.91866 0.94418 0.93011 0.94700 0.94667 0.75607 0.94514 0.91896 0.83661 0.83388 0.91755 0.91695 0.88164 0.90432 0.90969 0.89987 0.93976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.18 8.08 71.98 0.58 -4.60 16 2 C 0.05 2.32 0.50 -52.93 -0.03 2.30 16 3 C -0.12 -5.24 8.08 71.98 0.58 -4.66 16 4 C -0.53 -28.12 8.01 25.60 0.21 -27.91 16 5 H 0.04 2.31 7.74 -2.91 -0.02 2.29 16 6 C 0.03 1.54 5.15 84.66 0.44 1.97 16 7 N -0.90 -47.54 9.35 21.45 0.20 -47.34 16 8 Si 0.94 42.65 29.54 68.60 2.03 44.68 16 9 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 10 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 11 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 12 C 0.15 6.35 4.50 86.38 0.39 6.73 16 13 N -0.71 -24.19 4.82 -463.07 -2.23 -26.42 16 14 C 0.51 16.93 7.15 87.66 0.63 17.55 16 15 O -0.59 -24.90 15.84 -3.03 -0.05 -24.94 16 16 C -0.09 -1.99 2.20 -11.54 -0.03 -2.02 16 17 H 0.11 2.17 7.95 -2.39 -0.02 2.15 16 18 C 0.08 1.51 6.09 86.31 0.53 2.04 16 19 N -0.84 -10.70 6.92 -186.71 -1.29 -11.99 16 20 C -0.09 -2.07 2.54 -10.21 -0.03 -2.09 16 21 C -0.08 -1.49 5.86 31.12 0.18 -1.31 16 22 C -0.15 -2.72 8.08 31.12 0.25 -2.47 16 23 C -0.14 -3.33 7.62 31.18 0.24 -3.09 16 24 H 0.04 1.35 6.86 -2.39 -0.02 1.33 16 25 H 0.06 3.08 6.07 -2.38 -0.01 3.06 16 26 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 27 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.06 3.09 6.07 -2.38 -0.01 3.08 16 29 H 0.04 1.37 6.86 -2.39 -0.02 1.35 16 30 H 0.26 13.23 8.31 -92.71 -0.77 12.46 16 31 H 0.03 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.03 1.62 8.14 -2.39 -0.02 1.61 16 33 H 0.41 11.91 5.52 -92.71 -0.51 11.40 16 34 H 0.04 0.68 7.43 -2.39 -0.02 0.66 16 35 H 0.06 1.40 8.14 -2.38 -0.02 1.38 16 36 H 0.35 3.41 8.57 -89.70 -0.77 2.64 16 37 H 0.35 3.55 9.08 -89.69 -0.81 2.74 16 38 H 0.06 1.89 7.86 -2.39 -0.02 1.87 16 39 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.10 1.49 6.78 -2.39 -0.02 1.47 16 41 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 42 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 43 H 0.08 1.77 7.97 -2.39 -0.02 1.75 16 44 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 Total: -1.00 -61.25 338.01 1.50 -59.75 By element: Atomic # 1 Polarization: 24.92 SS G_CDS: -1.09 Total: 23.82 kcal Atomic # 6 Polarization: -21.49 SS G_CDS: 3.94 Total: -17.55 kcal Atomic # 7 Polarization: -82.43 SS G_CDS: -3.32 Total: -85.76 kcal Atomic # 8 Polarization: -24.90 SS G_CDS: -0.05 Total: -24.94 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 2.03 Total: 44.68 kcal Total: -61.25 1.50 -59.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705184713.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.634 kcal (2) G-P(sol) polarization free energy of solvation -61.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds