Wall clock time and date at job start Mon Mar 30 2020 05:09:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46846 * 110.99942 * 2 1 4 4 C 1.53035 * 109.52744 * 174.16069 * 3 2 1 5 5 C 1.53123 * 109.27774 * 59.17321 * 4 3 2 6 6 C 1.53114 * 109.16198 * 302.35270 * 5 4 3 7 7 H 1.09000 * 109.50493 * 297.71120 * 6 5 4 8 8 C 1.50706 * 109.53580 * 177.61579 * 6 5 4 9 9 O 1.21276 * 119.99535 * 0.17456 * 8 6 5 10 10 N 1.34772 * 119.99908 * 180.17758 * 8 6 5 11 11 C 1.46494 * 119.99573 * 179.97438 * 10 8 6 12 12 C 1.53006 * 109.46939 * 179.97438 * 11 10 8 13 13 C 1.53005 * 109.46898 * 299.99595 * 12 11 10 14 14 C 1.53000 * 109.47332 * 59.99850 * 12 11 10 15 15 C 1.50703 * 109.46917 * 180.02562 * 12 11 10 16 16 H 1.07998 * 120.00318 * 359.97438 * 15 12 11 17 17 C 1.37881 * 119.99632 * 179.97438 * 15 12 11 18 18 N 1.31510 * 120.00275 * 359.97438 * 17 15 12 19 19 Si 1.86804 * 119.99640 * 179.97438 * 17 15 12 20 20 H 1.48497 * 109.47463 * 359.97438 * 19 17 15 21 21 H 1.48498 * 109.46968 * 120.00081 * 19 17 15 22 22 H 1.48499 * 109.46822 * 239.99888 * 19 17 15 23 23 C 1.46844 * 111.00328 * 235.78846 * 2 1 3 24 24 H 1.09004 * 109.46796 * 63.95343 * 1 2 3 25 25 H 1.09001 * 109.46784 * 183.95487 * 1 2 3 26 26 H 1.08996 * 109.46988 * 303.95771 * 1 2 3 27 27 H 1.09008 * 109.46456 * 294.17536 * 3 2 1 28 28 H 1.09003 * 109.46474 * 54.14041 * 3 2 1 29 29 H 1.08995 * 109.50534 * 179.12351 * 4 3 2 30 30 H 1.09011 * 109.49854 * 299.24031 * 4 3 2 31 31 H 1.09000 * 109.52219 * 182.44440 * 5 4 3 32 32 H 1.09001 * 109.57074 * 62.29217 * 5 4 3 33 33 H 0.96999 * 120.00536 * 359.97438 * 10 8 6 34 34 H 1.08997 * 109.47654 * 299.99526 * 11 10 8 35 35 H 1.09001 * 109.47328 * 59.99938 * 11 10 8 36 36 H 1.09000 * 109.46853 * 60.00304 * 13 12 11 37 37 H 1.09000 * 109.46639 * 180.02562 * 13 12 11 38 38 H 1.09001 * 109.47430 * 300.00076 * 13 12 11 39 39 H 1.09000 * 109.46759 * 60.00155 * 14 12 11 40 40 H 1.09000 * 109.46901 * 179.97438 * 14 12 11 41 41 H 1.08996 * 109.46742 * 300.00011 * 14 12 11 42 42 H 0.97002 * 120.00101 * 179.97438 * 18 17 15 43 43 H 1.09000 * 109.46271 * 305.85568 * 23 2 1 44 44 H 1.09008 * 109.46154 * 65.83367 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3709 0.0000 4 6 3.5181 1.3343 0.1467 5 6 4.1189 0.5370 -1.0143 6 6 3.5182 -0.8714 -1.0208 7 1 3.7814 -1.3835 -0.0953 8 6 4.0598 -1.6449 -2.1953 9 8 4.8513 -1.1233 -2.9518 10 7 3.6646 -2.9162 -2.4049 11 6 4.1907 -3.6679 -3.5470 12 6 3.5867 -5.0737 -3.5541 13 6 3.9561 -5.7940 -2.2557 14 6 2.0642 -4.9741 -3.6668 15 6 4.1285 -5.8471 -4.7286 16 1 4.8327 -5.3824 -5.4028 17 6 3.7250 -7.1481 -4.9425 18 7 2.8679 -7.7142 -4.1213 19 14 4.3959 -8.1066 -6.3987 20 1 5.3366 -7.2498 -7.1644 21 1 5.1104 -9.3133 -5.9103 22 1 3.2736 -8.5186 -7.2796 23 6 1.9954 -0.7708 -1.1337 24 1 -0.3633 0.4513 -0.9233 25 1 -0.3633 -1.0252 0.0709 26 1 -0.3633 0.5740 0.8524 27 1 1.7325 1.8609 -0.9376 28 1 1.5634 1.9258 0.8329 29 1 3.9098 2.3513 0.1311 30 1 3.7813 0.8568 1.0907 31 1 5.1998 0.4714 -0.8904 32 1 3.8898 1.0351 -1.9564 33 1 3.0318 -3.3335 -1.7997 34 1 3.9280 -3.1546 -4.4720 35 1 5.2754 -3.7392 -3.4665 36 1 3.5647 -5.2347 -1.4060 37 1 3.5262 -6.7956 -2.2611 38 1 5.0408 -5.8649 -2.1755 39 1 1.8011 -4.4610 -4.5918 40 1 1.6340 -5.9757 -3.6724 41 1 1.6728 -4.4149 -2.8171 42 1 2.5838 -8.6294 -4.2719 43 1 1.5635 -1.7715 -1.1241 44 1 1.7327 -0.2707 -2.0660 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000705940574.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:09:05 Heat of formation + Delta-G solvation = -71.215929 kcal Electronic energy + Delta-G solvation = -21503.863334 eV Core-core repulsion = 18454.478683 eV Total energy + Delta-G solvation = -3049.384651 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.27835 -39.35296 -38.06837 -35.03804 -34.42858 -32.97330 -31.81586 -27.64071 -27.56549 -27.52675 -26.93065 -24.69637 -23.68699 -21.64428 -20.68300 -20.51294 -18.45073 -17.70566 -16.91353 -16.69916 -16.61373 -16.09623 -15.78916 -15.38098 -15.21351 -14.87649 -14.50512 -14.37149 -14.19670 -14.00236 -13.48340 -13.19806 -13.17293 -13.10869 -12.70828 -12.59044 -12.55514 -12.41655 -12.24940 -12.13996 -11.76639 -11.67883 -11.48990 -11.40550 -11.25547 -10.78187 -10.63599 -10.40345 -9.94427 -9.34723 -8.02674 -6.18353 1.40831 1.45123 1.54391 1.64548 2.29635 2.49087 2.96747 3.20916 3.67013 3.75956 3.88992 4.13304 4.22634 4.31795 4.46209 4.50265 4.52272 4.54386 4.60347 4.68445 4.71882 4.78816 4.90317 4.96573 5.00579 5.05608 5.06652 5.11182 5.12225 5.18851 5.20920 5.36339 5.42115 5.59166 5.66909 5.67153 6.01229 6.11513 6.14833 6.21350 6.43317 6.66213 6.85813 7.30737 7.49443 8.96332 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.034064 B = 0.004100 C = 0.003828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.781431 B = 6826.818150 C = 7311.840547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.546 5.546 3 C 0.050 3.950 4 C -0.109 4.109 5 C -0.100 4.100 6 C -0.094 4.094 7 H 0.118 0.882 8 C 0.508 3.492 9 O -0.591 6.591 10 N -0.709 5.709 11 C 0.147 3.853 12 C 0.050 3.950 13 C -0.120 4.120 14 C -0.119 4.119 15 C -0.529 4.529 16 H 0.043 0.957 17 C 0.029 3.971 18 N -0.898 5.898 19 Si 0.944 3.056 20 H -0.276 1.276 21 H -0.281 1.281 22 H -0.281 1.281 23 C 0.070 3.930 24 H 0.023 0.977 25 H 0.073 0.927 26 H 0.085 0.915 27 H 0.028 0.972 28 H 0.095 0.905 29 H 0.087 0.913 30 H 0.078 0.922 31 H 0.063 0.937 32 H 0.049 0.951 33 H 0.408 0.592 34 H 0.036 0.964 35 H 0.037 0.963 36 H 0.037 0.963 37 H 0.063 0.937 38 H 0.017 0.983 39 H 0.017 0.983 40 H 0.062 0.938 41 H 0.037 0.963 42 H 0.260 0.740 43 H 0.085 0.915 44 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.072 14.741 11.326 19.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.270 5.270 3 C -0.077 4.077 4 C -0.147 4.147 5 C -0.138 4.138 6 C -0.115 4.115 7 H 0.136 0.864 8 C 0.295 3.705 9 O -0.472 6.472 10 N -0.360 5.360 11 C 0.023 3.977 12 C 0.050 3.950 13 C -0.178 4.178 14 C -0.177 4.177 15 C -0.567 4.567 16 H 0.061 0.939 17 C -0.171 4.171 18 N -0.537 5.537 19 Si 0.771 3.229 20 H -0.201 1.201 21 H -0.207 1.207 22 H -0.207 1.207 23 C -0.059 4.059 24 H 0.042 0.958 25 H 0.092 0.908 26 H 0.104 0.896 27 H 0.046 0.954 28 H 0.114 0.886 29 H 0.105 0.895 30 H 0.097 0.903 31 H 0.082 0.918 32 H 0.068 0.932 33 H 0.246 0.754 34 H 0.055 0.945 35 H 0.055 0.945 36 H 0.056 0.944 37 H 0.081 0.919 38 H 0.036 0.964 39 H 0.036 0.964 40 H 0.081 0.919 41 H 0.056 0.944 42 H 0.070 0.930 43 H 0.103 0.897 44 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -4.468 14.688 11.239 19.027 hybrid contribution -0.019 -0.702 -1.754 1.890 sum -4.487 13.986 9.484 17.484 Atomic orbital electron populations 1.22438 0.85818 1.03112 1.01127 1.61946 1.08814 1.14284 1.41965 1.22235 0.95803 0.88651 1.01054 1.21591 0.94171 1.00797 0.98114 1.21376 1.00162 0.93033 0.99209 1.21337 0.96313 0.97343 0.96557 0.86367 1.21216 0.80809 0.81862 0.86611 1.90640 1.36986 1.70118 1.49426 1.46188 1.46709 1.13181 1.29887 1.21266 0.96698 0.92746 0.86983 1.18371 0.93162 0.89001 0.94497 1.21666 0.98194 1.02151 0.95782 1.21654 0.97339 1.01314 0.97383 1.21298 1.26202 0.98136 1.11084 0.93885 1.25438 0.95195 0.98126 0.98308 1.69909 1.32665 1.13702 1.37419 0.85717 0.78248 0.78661 0.80237 1.20111 1.20676 1.20688 1.21932 0.92424 0.99479 0.92030 0.95791 0.90821 0.89583 0.95376 0.88638 0.89491 0.90296 0.91819 0.93169 0.75440 0.94531 0.94469 0.94413 0.91857 0.96357 0.96389 0.91878 0.94412 0.93019 0.89653 0.95571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.35 9.59 127.69 1.22 1.57 16 2 N -0.55 -10.20 4.91 -922.57 -4.53 -14.73 16 3 C 0.05 0.82 5.46 86.33 0.47 1.29 16 4 C -0.11 -1.80 6.09 30.65 0.19 -1.62 16 5 C -0.10 -2.33 4.59 30.67 0.14 -2.19 16 6 C -0.09 -2.34 2.69 -11.49 -0.03 -2.37 16 7 H 0.12 2.63 8.14 -2.39 -0.02 2.61 16 8 C 0.51 17.32 7.16 87.66 0.63 17.95 16 9 O -0.59 -25.04 15.98 -3.02 -0.05 -25.09 16 10 N -0.71 -24.59 4.86 -463.07 -2.25 -26.84 16 11 C 0.15 6.33 4.50 86.38 0.39 6.72 16 12 C 0.05 2.33 0.50 -52.92 -0.03 2.31 16 13 C -0.12 -5.34 8.08 71.98 0.58 -4.76 16 14 C -0.12 -5.26 8.08 71.98 0.58 -4.68 16 15 C -0.53 -28.11 8.01 25.60 0.21 -27.91 16 16 H 0.04 2.35 7.74 -2.91 -0.02 2.33 16 17 C 0.03 1.54 5.15 84.66 0.44 1.97 16 18 N -0.90 -47.77 9.35 21.45 0.20 -47.57 16 19 Si 0.94 42.71 29.54 68.60 2.03 44.73 16 20 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 21 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 22 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 23 C 0.07 1.57 4.64 86.32 0.40 1.97 16 24 H 0.02 0.37 8.14 -2.38 -0.02 0.35 16 25 H 0.07 1.09 8.14 -2.39 -0.02 1.08 16 26 H 0.09 1.02 8.10 -2.39 -0.02 1.00 16 27 H 0.03 0.49 8.14 -2.38 -0.02 0.48 16 28 H 0.10 1.19 8.09 -2.39 -0.02 1.17 16 29 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.08 1.24 8.14 -2.38 -0.02 1.22 16 31 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 32 H 0.05 1.33 8.05 -2.39 -0.02 1.31 16 33 H 0.41 12.37 5.60 -92.71 -0.52 11.85 16 34 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 35 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 36 H 0.04 1.40 6.86 -2.39 -0.02 1.38 16 37 H 0.06 3.13 6.07 -2.39 -0.01 3.11 16 38 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 39 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 40 H 0.06 3.10 6.07 -2.39 -0.01 3.09 16 41 H 0.04 1.38 6.86 -2.39 -0.02 1.37 16 42 H 0.26 13.29 8.31 -92.71 -0.77 12.52 16 43 H 0.09 1.84 7.57 -2.39 -0.02 1.82 16 44 H 0.03 0.65 8.14 -2.38 -0.02 0.63 16 Total: -1.00 -60.75 337.51 1.02 -59.72 By element: Atomic # 1 Polarization: 19.09 SS G_CDS: 0.44 Total: 19.52 kcal Atomic # 6 Polarization: -14.94 SS G_CDS: 5.19 Total: -9.75 kcal Atomic # 7 Polarization: -82.56 SS G_CDS: -6.58 Total: -89.14 kcal Atomic # 8 Polarization: -25.04 SS G_CDS: -0.05 Total: -25.09 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 2.03 Total: 44.73 kcal Total: -60.75 1.02 -59.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705940574.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.493 kcal (2) G-P(sol) polarization free energy of solvation -60.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds