Wall clock time and date at job start Mon Mar 30 2020 04:53:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47320 * 2 1 4 4 C 1.53002 * 109.47320 * 179.97438 * 3 2 1 5 5 H 1.08999 * 109.46698 * 55.00552 * 4 3 2 6 6 C 1.52996 * 109.47042 * 174.99907 * 4 3 2 7 7 N 1.46497 * 109.47006 * 295.00252 * 4 3 2 8 8 C 1.34777 * 119.99720 * 154.99738 * 7 4 3 9 9 O 1.21286 * 120.00137 * 0.02562 * 8 7 4 10 10 C 1.50704 * 119.99852 * 179.97438 * 8 7 4 11 11 H 1.08996 * 109.47163 * 300.00343 * 10 8 7 12 12 C 1.52998 * 109.46793 * 60.00227 * 10 8 7 13 13 N 1.46497 * 109.47011 * 180.02562 * 10 8 7 14 14 C 1.36934 * 119.99749 * 121.56104 * 13 10 8 15 15 H 1.08003 * 120.00390 * 212.87543 * 14 13 10 16 16 C 1.38813 * 120.00201 * 32.88072 * 14 13 10 17 17 N 1.31619 * 120.00077 * 17.33451 * 16 14 13 18 18 Si 1.86799 * 120.00109 * 197.33984 * 16 14 13 19 19 H 1.48504 * 109.47062 * 359.97438 * 18 16 14 20 20 H 1.48494 * 109.47432 * 119.99542 * 18 16 14 21 21 H 1.48499 * 109.47083 * 239.99524 * 18 16 14 22 22 C 1.46499 * 120.00357 * 301.56244 * 13 10 8 23 23 C 1.52994 * 117.50107 * 193.77779 * 22 13 10 24 24 C 1.52998 * 117.50165 * 125.11870 * 22 13 10 25 25 H 1.08999 * 109.47030 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47032 * 299.99525 * 1 2 3 27 27 H 1.08997 * 109.46882 * 59.99874 * 1 2 3 28 28 H 1.08997 * 109.47248 * 120.00524 * 2 1 3 29 29 H 1.09005 * 109.46682 * 240.00069 * 2 1 3 30 30 H 1.08997 * 109.47388 * 300.00439 * 3 2 1 31 31 H 1.09003 * 109.46680 * 60.00260 * 3 2 1 32 32 H 1.09009 * 109.46776 * 60.00557 * 6 4 3 33 33 H 1.08997 * 109.47068 * 179.97438 * 6 4 3 34 34 H 1.09001 * 109.47403 * 300.00377 * 6 4 3 35 35 H 0.97000 * 120.00080 * 334.99647 * 7 4 3 36 36 H 1.09001 * 109.46902 * 179.97438 * 12 10 8 37 37 H 1.08994 * 109.47295 * 300.00124 * 12 10 8 38 38 H 1.09004 * 109.46910 * 60.00372 * 12 10 8 39 39 H 0.96994 * 120.00239 * 184.98293 * 17 16 14 40 40 H 1.09009 * 115.54661 * 339.45319 * 22 13 10 41 41 H 1.09000 * 117.50191 * 0.02562 * 23 22 13 42 42 H 1.09007 * 117.49538 * 145.01944 * 23 22 13 43 43 H 1.09000 * 117.50270 * 214.98657 * 24 22 13 44 44 H 1.09007 * 117.49809 * 0.02562 * 24 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4424 0.0006 5 1 3.9337 0.8529 -0.8410 6 6 4.0801 2.8794 -0.1251 7 7 4.0578 0.8588 1.2527 8 6 5.2798 0.2923 1.3010 9 8 5.9757 0.2660 0.3080 10 6 5.7818 -0.3076 2.5891 11 1 5.8183 0.4632 3.3589 12 6 4.8376 -1.4268 3.0325 13 7 7.1250 -0.8545 2.3822 14 6 8.1731 -0.3998 3.1371 15 1 9.1642 -0.3499 2.7108 16 6 7.9619 -0.0030 4.4505 17 7 6.8659 -0.3693 5.0805 18 14 9.2330 1.0511 5.3237 19 1 10.3663 1.3239 4.4035 20 1 8.6116 2.3345 5.7382 21 1 9.7321 0.3325 6.5235 22 6 7.3471 -1.8878 1.3678 23 6 8.6750 -2.6464 1.4109 24 6 8.4161 -1.6182 0.3069 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 1.8933 -0.5139 -0.8901 30 1 1.6767 1.9563 -0.8899 31 1 1.6767 1.9562 0.8901 32 1 3.7164 3.4689 0.7166 33 1 5.1701 2.8794 -0.1242 34 1 3.7171 3.3136 -1.0567 35 1 3.5014 0.8802 2.0469 36 1 5.2010 -1.8610 3.9639 37 1 3.8384 -1.0196 3.1865 38 1 4.8012 -2.1977 2.2627 39 1 6.6836 -0.0334 5.9719 40 1 6.4605 -2.4420 1.0594 41 1 9.3833 -2.3771 2.1943 42 1 8.6621 -3.6997 1.1305 43 1 8.2331 -1.9953 -0.6993 44 1 8.9546 -0.6722 0.3640 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000706734761.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:53:32 Heat of formation + Delta-G solvation = -6.856756 kcal Electronic energy + Delta-G solvation = -21950.707830 eV Core-core repulsion = 18904.114002 eV Total energy + Delta-G solvation = -3046.593827 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.25283 -37.09223 -35.95920 -33.72545 -33.15690 -31.58891 -30.20318 -28.38478 -26.66719 -24.23660 -23.39636 -21.75914 -21.17384 -20.75644 -20.06006 -19.20796 -16.76289 -16.18274 -15.80735 -14.95443 -14.66766 -14.48152 -14.12551 -13.83426 -13.73248 -13.10205 -12.95858 -12.64668 -12.55547 -12.12272 -12.07365 -11.96078 -11.61145 -11.40881 -11.18852 -10.96510 -10.87594 -10.78129 -10.71171 -10.59263 -10.51277 -10.43958 -10.21081 -9.85450 -9.47938 -9.13278 -8.66742 -8.45473 -8.39495 -6.55444 -5.86111 -3.35692 3.33140 3.42800 3.46857 3.64456 3.84143 4.45331 4.71668 4.97189 5.00494 5.10827 5.24595 5.38281 5.40181 5.47106 5.53046 5.63618 5.76120 5.81447 5.89323 5.92662 6.01002 6.05344 6.11152 6.23217 6.28632 6.30748 6.33988 6.45898 6.46183 6.49675 6.64395 6.67132 6.80676 7.09933 7.17134 7.24042 7.31052 7.44875 7.79836 8.20967 8.43408 9.05466 9.23376 9.76864 10.31154 11.17038 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.018979 B = 0.005834 C = 0.005377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.995127 B = 4798.153447 C = 5206.460714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.125 4.125 3 C -0.124 4.124 4 C 0.141 3.859 5 H 0.081 0.919 6 C -0.162 4.162 7 N -0.738 5.738 8 C 0.488 3.512 9 O -0.533 6.533 10 C 0.178 3.822 11 H 0.117 0.883 12 C -0.140 4.140 13 N -0.532 5.532 14 C -0.247 4.247 15 H 0.067 0.933 16 C 0.008 3.992 17 N -0.895 5.895 18 Si 0.899 3.101 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.289 1.289 22 C 0.147 3.853 23 C -0.207 4.207 24 C -0.205 4.205 25 H 0.052 0.948 26 H 0.053 0.947 27 H 0.050 0.950 28 H 0.067 0.933 29 H 0.060 0.940 30 H 0.070 0.930 31 H 0.065 0.935 32 H 0.052 0.948 33 H 0.061 0.939 34 H 0.056 0.944 35 H 0.393 0.607 36 H 0.087 0.913 37 H 0.035 0.965 38 H 0.031 0.969 39 H 0.254 0.746 40 H 0.082 0.918 41 H 0.096 0.904 42 H 0.071 0.929 43 H 0.068 0.932 44 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.271 1.960 -6.796 13.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.163 4.163 3 C -0.162 4.162 4 C 0.035 3.965 5 H 0.099 0.901 6 C -0.220 4.220 7 N -0.393 5.393 8 C 0.274 3.726 9 O -0.407 6.407 10 C 0.067 3.933 11 H 0.134 0.866 12 C -0.199 4.199 13 N -0.247 5.247 14 C -0.377 4.377 15 H 0.085 0.915 16 C -0.191 4.191 17 N -0.538 5.538 18 Si 0.728 3.272 19 H -0.201 1.201 20 H -0.215 1.215 21 H -0.216 1.216 22 C 0.038 3.962 23 C -0.245 4.245 24 C -0.245 4.245 25 H 0.071 0.929 26 H 0.072 0.928 27 H 0.069 0.931 28 H 0.086 0.914 29 H 0.079 0.921 30 H 0.089 0.911 31 H 0.083 0.917 32 H 0.071 0.929 33 H 0.080 0.920 34 H 0.075 0.925 35 H 0.227 0.773 36 H 0.106 0.894 37 H 0.054 0.946 38 H 0.050 0.950 39 H 0.064 0.936 40 H 0.100 0.900 41 H 0.114 0.886 42 H 0.090 0.910 43 H 0.087 0.913 44 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -10.751 1.921 -7.299 13.136 hybrid contribution 0.333 0.724 0.804 1.132 sum -10.418 2.645 -6.495 12.558 Atomic orbital electron populations 1.21775 0.96137 1.01453 1.01479 1.21527 0.95321 0.96758 1.02680 1.21901 0.94644 0.97260 1.02433 1.20816 0.92637 0.94084 0.88935 0.90097 1.22168 1.02389 0.96436 1.01022 1.46420 1.18913 1.61518 1.12410 1.22953 0.79872 0.76741 0.92996 1.90602 1.55546 1.57457 1.37123 1.20217 0.85371 0.96547 0.91204 0.86596 1.22054 0.96818 0.98442 1.02596 1.43017 1.04287 1.38932 1.38504 1.19125 0.89767 1.37877 0.90932 0.91511 1.25083 0.97808 1.00742 0.95433 1.70043 1.27247 1.43497 1.13023 0.86280 0.81346 0.80103 0.79430 1.20138 1.21506 1.21564 1.20740 0.90192 0.92482 0.92834 1.23207 1.03771 0.95270 1.02293 1.23136 1.08334 0.99595 0.93463 0.92909 0.92835 0.93051 0.91447 0.92104 0.91108 0.91654 0.92853 0.91960 0.92534 0.77285 0.89431 0.94648 0.94999 0.93601 0.89981 0.88557 0.91025 0.91303 0.89857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.91 37.16 0.37 -0.95 16 2 C -0.13 -1.31 5.82 -26.73 -0.16 -1.47 16 3 C -0.12 -1.29 4.75 -26.73 -0.13 -1.42 16 4 C 0.14 1.93 2.57 -67.93 -0.17 1.76 16 5 H 0.08 1.28 7.58 -51.93 -0.39 0.89 16 6 C -0.16 -2.17 9.48 37.16 0.35 -1.82 16 7 N -0.74 -11.67 4.42 -53.81 -0.24 -11.90 16 8 C 0.49 10.03 7.01 -10.98 -0.08 9.95 16 9 O -0.53 -12.55 14.55 5.55 0.08 -12.47 16 10 C 0.18 3.98 2.19 -69.08 -0.15 3.83 16 11 H 0.12 2.87 6.08 -51.93 -0.32 2.55 16 12 C -0.14 -2.80 8.96 37.16 0.33 -2.46 16 13 N -0.53 -13.26 2.50 -159.46 -0.40 -13.66 16 14 C -0.25 -6.68 8.27 -15.06 -0.12 -6.80 16 15 H 0.07 1.85 6.98 -52.48 -0.37 1.49 16 16 C 0.01 0.22 4.84 -17.43 -0.08 0.14 16 17 N -0.89 -23.88 10.45 55.49 0.58 -23.30 16 18 Si 0.90 21.24 29.59 -169.99 -5.03 16.21 16 19 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 20 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 21 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 22 C 0.15 3.37 4.75 -67.94 -0.32 3.05 16 23 C -0.21 -4.40 9.79 -26.70 -0.26 -4.66 16 24 C -0.20 -4.46 9.72 -26.70 -0.26 -4.72 16 25 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.07 0.78 7.75 -51.93 -0.40 0.38 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.05 0.67 8.14 -51.92 -0.42 0.24 16 33 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 35 H 0.39 5.48 8.02 -40.82 -0.33 5.15 16 36 H 0.09 1.99 7.25 -51.93 -0.38 1.61 16 37 H 0.03 0.59 7.56 -51.93 -0.39 0.19 16 38 H 0.03 0.61 6.98 -51.93 -0.36 0.25 16 39 H 0.25 6.57 8.32 -40.82 -0.34 6.23 16 40 H 0.08 1.82 7.04 -51.92 -0.37 1.46 16 41 H 0.10 2.20 6.84 -51.93 -0.36 1.85 16 42 H 0.07 1.34 8.14 -51.92 -0.42 0.92 16 43 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 44 H 0.08 1.97 8.06 -51.92 -0.42 1.55 16 LS Contribution 348.95 15.07 5.26 5.26 Total: -1.00 -28.94 348.95 -8.29 -37.24 By element: Atomic # 1 Polarization: 16.07 SS G_CDS: -7.86 Total: 8.21 kcal Atomic # 6 Polarization: -4.89 SS G_CDS: -0.68 Total: -5.58 kcal Atomic # 7 Polarization: -48.80 SS G_CDS: -0.06 Total: -48.86 kcal Atomic # 8 Polarization: -12.55 SS G_CDS: 0.08 Total: -12.47 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.03 Total: 16.21 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -28.94 -8.29 -37.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706734761.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.381 kcal (2) G-P(sol) polarization free energy of solvation -28.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds