Wall clock time and date at job start Mon Mar 30 2020 04:53:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47051 * 2 1 4 4 C 1.53003 * 109.46695 * 179.97438 * 3 2 1 5 5 H 1.09004 * 109.47219 * 55.00167 * 4 3 2 6 6 C 1.53004 * 109.46587 * 174.99862 * 4 3 2 7 7 N 1.46495 * 109.47271 * 294.99871 * 4 3 2 8 8 C 1.34772 * 120.00061 * 155.00327 * 7 4 3 9 9 O 1.21283 * 119.99920 * 359.97438 * 8 7 4 10 10 C 1.50705 * 120.00229 * 180.02562 * 8 7 4 11 11 H 1.08996 * 109.47089 * 59.99482 * 10 8 7 12 12 C 1.52998 * 109.46777 * 299.99941 * 10 8 7 13 13 N 1.46496 * 109.46978 * 179.97438 * 10 8 7 14 14 C 1.36932 * 119.99997 * 239.99438 * 13 10 8 15 15 H 1.08002 * 120.00342 * 308.60969 * 14 13 10 16 16 C 1.38820 * 120.00029 * 128.60888 * 14 13 10 17 17 N 1.31614 * 119.99891 * 161.36529 * 16 14 13 18 18 Si 1.86803 * 119.99726 * 341.64000 * 16 14 13 19 19 H 1.48496 * 109.46894 * 274.91718 * 18 16 14 20 20 H 1.48500 * 109.47037 * 34.91580 * 18 16 14 21 21 H 1.48496 * 109.47123 * 154.91770 * 18 16 14 22 22 C 1.46498 * 120.00186 * 60.00034 * 13 10 8 23 23 C 1.53005 * 117.50132 * 182.36761 * 22 13 10 24 24 C 1.53005 * 117.50182 * 113.70449 * 22 13 10 25 25 H 1.09005 * 109.47337 * 59.99736 * 1 2 3 26 26 H 1.08994 * 109.47404 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47316 * 300.00364 * 1 2 3 28 28 H 1.09002 * 109.46538 * 240.00138 * 2 1 3 29 29 H 1.08998 * 109.46785 * 119.99900 * 2 1 3 30 30 H 1.08997 * 109.46987 * 59.99978 * 3 2 1 31 31 H 1.08998 * 109.46937 * 300.00070 * 3 2 1 32 32 H 1.08995 * 109.47112 * 299.99991 * 6 4 3 33 33 H 1.08996 * 109.47153 * 59.99894 * 6 4 3 34 34 H 1.08996 * 109.46760 * 180.02562 * 6 4 3 35 35 H 0.97003 * 119.99868 * 335.00163 * 7 4 3 36 36 H 1.09002 * 109.47255 * 59.99542 * 12 10 8 37 37 H 1.08995 * 109.47174 * 180.02562 * 12 10 8 38 38 H 1.09001 * 109.47145 * 300.00036 * 12 10 8 39 39 H 0.97001 * 119.99605 * 180.02562 * 17 16 14 40 40 H 1.09007 * 115.55250 * 328.03875 * 22 13 10 41 41 H 1.08999 * 117.49679 * 359.97438 * 23 22 13 42 42 H 1.08996 * 117.49920 * 145.01989 * 23 22 13 43 43 H 1.08999 * 117.50305 * 214.98277 * 24 22 13 44 44 H 1.08999 * 117.49185 * 0.02562 * 24 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 1 3.9337 0.8529 -0.8410 6 6 4.0800 2.8795 -0.1251 7 7 4.0578 0.8589 1.2527 8 6 5.2797 0.2924 1.3011 9 8 5.9753 0.2653 0.3079 10 6 5.7813 -0.3084 2.5890 11 1 5.1086 -1.1060 2.9040 12 6 5.8321 0.7728 3.6703 13 7 7.1242 -0.8561 2.3818 14 6 7.3595 -2.1889 2.5897 15 1 7.0566 -2.6527 3.5168 16 6 7.9876 -2.9441 1.6087 17 7 8.5415 -4.0968 1.9195 18 14 8.0530 -2.3206 -0.1510 19 1 6.8048 -2.7034 -0.8585 20 1 8.1864 -0.8416 -0.1474 21 1 9.2199 -2.9212 -0.8459 22 6 8.2153 0.0221 1.9524 23 6 9.5811 -0.6197 1.6998 24 6 9.3632 0.2557 2.9366 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8900 28 1 1.8932 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6766 1.9563 0.8900 31 1 1.6766 1.9563 -0.8900 32 1 3.7171 3.3136 -1.0567 33 1 3.7163 3.4690 0.7164 34 1 5.1700 2.8794 -0.1251 35 1 3.5013 0.8803 2.0470 36 1 4.8328 1.1800 3.8242 37 1 6.1953 0.3384 4.6016 38 1 6.5048 1.5705 3.3552 39 1 8.9807 -4.6243 1.2341 40 1 7.9243 0.8548 1.3119 41 1 9.6678 -1.6953 1.8535 42 1 10.1887 -0.2091 0.8934 43 1 9.8277 1.2417 2.9434 44 1 9.3068 -0.2445 3.9034 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000706734765.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:53:34 Heat of formation + Delta-G solvation = -18.309215 kcal Electronic energy + Delta-G solvation = -22087.990374 eV Core-core repulsion = 19040.899930 eV Total energy + Delta-G solvation = -3047.090443 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.95751 -38.97297 -37.44338 -35.15757 -34.40605 -34.11049 -31.88554 -30.36853 -27.55032 -26.11772 -24.96446 -23.31299 -22.86494 -22.20642 -21.53980 -20.80482 -18.85582 -17.67130 -17.54604 -16.73161 -16.62338 -15.97805 -15.56377 -15.29159 -15.08200 -14.82848 -14.40914 -14.34981 -14.14943 -13.59932 -13.56176 -13.33254 -13.14978 -12.96114 -12.87775 -12.68287 -12.54443 -12.35824 -12.15179 -12.12357 -11.83915 -11.64668 -11.59551 -11.49679 -11.32504 -10.83117 -10.54567 -10.21663 -9.88653 -8.43451 -8.24630 -5.82852 1.35384 1.41789 1.72053 1.92293 2.37219 2.46352 2.97826 3.19783 3.40922 3.75286 4.04933 4.11412 4.14627 4.31287 4.36580 4.39659 4.42062 4.46896 4.53361 4.64315 4.67206 4.79260 4.85736 4.89182 4.91354 4.91943 5.02676 5.04388 5.09583 5.15533 5.28764 5.32830 5.35667 5.38220 5.45607 5.49065 5.55450 5.76006 5.93394 6.22603 6.75175 7.06738 7.49116 7.62753 8.07594 8.87696 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.020913 B = 0.006287 C = 0.005780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.544943 B = 4452.883462 C = 4842.860385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.130 4.130 3 C -0.111 4.111 4 C 0.136 3.864 5 H 0.048 0.952 6 C -0.153 4.153 7 N -0.714 5.714 8 C 0.492 3.508 9 O -0.572 6.572 10 C 0.145 3.855 11 H 0.095 0.905 12 C -0.137 4.137 13 N -0.560 5.560 14 C -0.271 4.271 15 H 0.047 0.953 16 C 0.025 3.975 17 N -0.935 5.935 18 Si 0.927 3.073 19 H -0.321 1.321 20 H -0.217 1.217 21 H -0.316 1.316 22 C 0.131 3.869 23 C -0.227 4.227 24 C -0.186 4.186 25 H 0.059 0.941 26 H 0.049 0.951 27 H 0.066 0.934 28 H 0.040 0.960 29 H 0.055 0.945 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.030 0.970 35 H 0.411 0.589 36 H 0.090 0.910 37 H 0.060 0.940 38 H 0.051 0.949 39 H 0.262 0.738 40 H 0.096 0.904 41 H 0.085 0.915 42 H 0.087 0.913 43 H 0.106 0.894 44 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.813 15.835 -0.176 21.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.168 4.168 3 C -0.149 4.149 4 C 0.031 3.969 5 H 0.066 0.934 6 C -0.211 4.211 7 N -0.369 5.369 8 C 0.278 3.722 9 O -0.450 6.450 10 C 0.035 3.965 11 H 0.113 0.887 12 C -0.196 4.196 13 N -0.279 5.279 14 C -0.401 4.401 15 H 0.064 0.936 16 C -0.174 4.174 17 N -0.577 5.577 18 Si 0.757 3.243 19 H -0.251 1.251 20 H -0.139 1.139 21 H -0.244 1.244 22 C 0.024 3.976 23 C -0.265 4.265 24 C -0.226 4.226 25 H 0.078 0.922 26 H 0.068 0.932 27 H 0.085 0.915 28 H 0.059 0.941 29 H 0.074 0.926 30 H 0.109 0.891 31 H 0.107 0.893 32 H 0.094 0.906 33 H 0.094 0.906 34 H 0.049 0.951 35 H 0.248 0.752 36 H 0.108 0.892 37 H 0.079 0.921 38 H 0.070 0.930 39 H 0.072 0.928 40 H 0.114 0.886 41 H 0.103 0.897 42 H 0.105 0.895 43 H 0.124 0.876 44 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -14.247 15.674 -0.924 21.202 hybrid contribution 0.365 -0.830 -0.909 1.284 sum -13.882 14.845 -1.833 20.407 Atomic orbital electron populations 1.21731 0.94344 1.01749 1.02552 1.21552 0.96932 0.96993 1.01296 1.21839 0.91483 0.97089 1.04506 1.20997 0.95112 0.94112 0.86703 0.93397 1.22079 1.00218 0.95653 1.03173 1.46155 1.17192 1.59576 1.13964 1.22357 0.81435 0.76768 0.91659 1.90631 1.57500 1.58651 1.38216 1.20917 0.87267 0.96918 0.91408 0.88738 1.22021 1.02860 0.97227 0.97502 1.43362 1.02497 1.03897 1.78161 1.18426 1.38546 0.84499 0.98619 0.93567 1.26189 0.96431 0.94418 1.00390 1.69970 1.37675 1.15590 1.34468 0.86279 0.73617 0.82526 0.81836 1.25103 1.13903 1.24448 1.21100 0.83194 0.95039 0.98256 1.23395 1.02098 1.00097 1.00895 1.23426 1.05416 0.99719 0.94008 0.92154 0.93211 0.91464 0.94104 0.92589 0.89138 0.89331 0.90592 0.90607 0.95079 0.75208 0.89166 0.92092 0.93004 0.92850 0.88624 0.89672 0.89505 0.87573 0.90500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.09 9.91 71.98 0.71 -1.38 16 2 C -0.13 -2.42 5.82 30.60 0.18 -2.24 16 3 C -0.11 -1.74 4.75 30.60 0.15 -1.59 16 4 C 0.14 3.14 2.57 44.99 0.12 3.25 16 5 H 0.05 1.48 7.58 -2.39 -0.02 1.46 16 6 C -0.15 -3.15 9.48 71.98 0.68 -2.47 16 7 N -0.71 -18.00 4.42 -442.53 -1.96 -19.96 16 8 C 0.49 17.78 6.95 87.66 0.61 18.39 16 9 O -0.57 -26.09 12.30 -3.04 -0.04 -26.13 16 10 C 0.14 5.35 3.13 44.25 0.14 5.49 16 11 H 0.09 3.48 7.89 -2.39 -0.02 3.46 16 12 C -0.14 -3.77 9.09 71.98 0.65 -3.12 16 13 N -0.56 -26.34 1.79 -658.37 -1.18 -27.51 16 14 C -0.27 -15.33 9.20 84.04 0.77 -14.55 16 15 H 0.05 2.84 8.06 -2.91 -0.02 2.82 16 16 C 0.03 1.51 3.58 84.86 0.30 1.81 16 17 N -0.94 -59.08 13.97 21.65 0.30 -58.77 16 18 Si 0.93 51.59 23.96 68.60 1.64 53.24 16 19 H -0.32 -18.95 7.11 99.48 0.71 -18.24 16 20 H -0.22 -11.61 4.36 99.48 0.43 -11.18 16 21 H -0.32 -17.63 7.11 99.48 0.71 -16.92 16 22 C 0.13 5.87 2.83 45.00 0.13 6.00 16 23 C -0.23 -10.54 6.65 30.62 0.20 -10.34 16 24 C -0.19 -7.40 10.37 30.62 0.32 -7.08 16 25 H 0.06 0.77 8.14 -2.38 -0.02 0.75 16 26 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 27 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.06 1.15 7.75 -2.39 -0.02 1.13 16 30 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.09 1.16 8.14 -2.39 -0.02 1.15 16 32 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.41 7.47 8.02 -92.71 -0.74 6.72 16 36 H 0.09 1.70 7.56 -2.39 -0.02 1.68 16 37 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 38 H 0.05 1.47 7.67 -2.39 -0.02 1.45 16 39 H 0.26 15.98 8.31 -92.71 -0.77 15.20 16 40 H 0.10 4.29 6.77 -2.38 -0.02 4.27 16 41 H 0.09 4.65 4.87 -2.39 -0.01 4.64 16 42 H 0.09 3.69 8.14 -2.39 -0.02 3.67 16 43 H 0.11 3.46 8.14 -2.39 -0.02 3.44 16 44 H 0.08 3.25 8.14 -2.39 -0.02 3.23 16 Total: -1.00 -73.48 339.70 3.67 -69.81 By element: Atomic # 1 Polarization: 17.23 SS G_CDS: -0.06 Total: 17.17 kcal Atomic # 6 Polarization: -12.80 SS G_CDS: 4.96 Total: -7.83 kcal Atomic # 7 Polarization: -103.42 SS G_CDS: -2.83 Total: -106.25 kcal Atomic # 8 Polarization: -26.09 SS G_CDS: -0.04 Total: -26.13 kcal Atomic # 14 Polarization: 51.59 SS G_CDS: 1.64 Total: 53.24 kcal Total: -73.48 3.67 -69.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706734765.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.497 kcal (2) G-P(sol) polarization free energy of solvation -73.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds