Wall clock time and date at job start Mon Mar 30 2020 04:53:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53004 * 109.47157 * 2 1 4 4 C 1.52992 * 109.47034 * 179.97438 * 3 2 1 5 5 H 1.08999 * 109.47253 * 304.99985 * 4 3 2 6 6 C 1.53003 * 109.47126 * 185.00139 * 4 3 2 7 7 N 1.46495 * 109.47247 * 64.99895 * 4 3 2 8 8 C 1.34784 * 120.00178 * 204.99605 * 7 4 3 9 9 O 1.21277 * 119.99668 * 0.02562 * 8 7 4 10 10 C 1.50695 * 120.00059 * 179.97438 * 8 7 4 11 11 H 1.09005 * 109.47430 * 300.00635 * 10 8 7 12 12 C 1.53001 * 109.47053 * 60.00571 * 10 8 7 13 13 N 1.46502 * 109.47104 * 180.02562 * 10 8 7 14 14 C 1.36941 * 119.99812 * 121.56239 * 13 10 8 15 15 H 1.07997 * 120.00130 * 212.87651 * 14 13 10 16 16 C 1.38814 * 120.00023 * 32.87939 * 14 13 10 17 17 N 1.31620 * 120.00053 * 17.32622 * 16 14 13 18 18 Si 1.86798 * 119.99730 * 197.32756 * 16 14 13 19 19 H 1.48500 * 109.47113 * 90.00161 * 18 16 14 20 20 H 1.48502 * 109.47003 * 210.00108 * 18 16 14 21 21 H 1.48495 * 109.47554 * 329.99764 * 18 16 14 22 22 C 1.46500 * 120.00100 * 301.56413 * 13 10 8 23 23 C 1.53002 * 117.49866 * 193.77852 * 22 13 10 24 24 C 1.52999 * 117.49633 * 125.12190 * 22 13 10 25 25 H 1.08998 * 109.46911 * 59.99913 * 1 2 3 26 26 H 1.08995 * 109.46782 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47072 * 299.99993 * 1 2 3 28 28 H 1.08994 * 109.47320 * 239.99634 * 2 1 3 29 29 H 1.09006 * 109.47213 * 119.99520 * 2 1 3 30 30 H 1.09007 * 109.47097 * 59.99691 * 3 2 1 31 31 H 1.08996 * 109.46772 * 299.99963 * 3 2 1 32 32 H 1.09009 * 109.46786 * 299.99918 * 6 4 3 33 33 H 1.08994 * 109.47319 * 59.99538 * 6 4 3 34 34 H 1.09000 * 109.47235 * 180.02562 * 6 4 3 35 35 H 0.96997 * 120.00472 * 25.00291 * 7 4 3 36 36 H 1.08993 * 109.47318 * 59.99827 * 12 10 8 37 37 H 1.09002 * 109.46941 * 180.02562 * 12 10 8 38 38 H 1.09003 * 109.47214 * 299.99469 * 12 10 8 39 39 H 0.96999 * 119.99733 * 184.98378 * 17 16 14 40 40 H 1.08997 * 115.54676 * 339.44927 * 22 13 10 41 41 H 1.09002 * 117.49725 * 0.02562 * 23 22 13 42 42 H 1.09004 * 117.49630 * 145.01604 * 23 22 13 43 43 H 1.09012 * 117.49394 * 214.98068 * 24 22 13 44 44 H 1.09001 * 117.50318 * 359.97438 * 24 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9330 0.8532 0.8427 6 6 4.0800 2.8795 0.1264 7 7 4.0589 0.8586 -1.2508 8 6 5.2809 0.2920 -1.2980 9 8 5.9756 0.2653 -0.3043 10 6 5.7836 -0.3091 -2.5852 11 1 5.1111 -1.1069 -2.9007 12 6 5.8353 0.7717 -3.6668 13 7 7.1263 -0.8567 -2.3768 14 6 7.3693 -2.1833 -2.6148 15 1 8.0970 -2.7143 -2.0193 16 6 6.6801 -2.8454 -3.6216 17 7 6.0615 -2.1576 -4.5578 18 14 6.6307 -4.7125 -3.6475 19 1 5.4564 -5.1874 -2.8725 20 1 6.5217 -5.1854 -5.0510 21 1 7.8748 -5.2492 -3.0397 22 6 8.2091 0.0147 -1.9139 23 6 9.6394 -0.5178 -2.0213 24 6 8.9645 -0.4068 -0.6519 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5139 -0.8899 29 1 1.8934 -0.5138 0.8901 30 1 1.6767 1.9564 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 3.7170 3.4689 -0.7157 33 1 3.7162 3.3140 1.0575 34 1 5.1700 2.8796 0.1264 35 1 3.5032 0.8797 -2.0455 36 1 6.5077 1.5694 -3.3515 37 1 6.1985 0.3368 -4.5980 38 1 4.8361 1.1788 -3.8219 39 1 5.5203 -2.6166 -5.2192 40 1 8.0557 1.0816 -2.0760 41 1 9.7748 -1.5164 -2.4368 42 1 10.4271 0.1989 -2.2537 43 1 9.3085 0.3830 0.0161 44 1 8.6556 -1.3322 -0.1658 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000706734770.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:53:41 Heat of formation + Delta-G solvation = -6.837340 kcal Electronic energy + Delta-G solvation = -21949.244562 eV Core-core repulsion = 18902.651576 eV Total energy + Delta-G solvation = -3046.592985 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.25158 -37.08944 -35.95214 -33.72392 -33.14335 -31.57157 -30.21229 -28.39964 -26.65742 -24.23387 -23.37867 -21.73956 -21.17266 -20.78288 -20.03609 -19.20791 -16.76492 -16.22032 -15.73976 -14.94243 -14.68817 -14.32101 -14.25168 -13.96084 -13.62687 -13.06101 -12.97695 -12.64747 -12.56452 -12.10311 -12.06902 -11.95777 -11.64193 -11.36717 -11.19212 -10.96431 -10.85446 -10.80555 -10.67578 -10.58571 -10.51372 -10.43905 -10.21103 -9.86198 -9.47642 -9.13383 -8.65911 -8.47090 -8.38295 -6.55500 -5.85879 -3.35656 3.34730 3.42616 3.44988 3.64456 3.84198 4.45260 4.73330 5.00289 5.02509 5.10899 5.24719 5.39283 5.40866 5.47425 5.54559 5.63133 5.76544 5.82049 5.89577 5.93539 6.03572 6.05429 6.13784 6.22998 6.30741 6.32680 6.33071 6.42417 6.47093 6.49565 6.64615 6.67273 6.80713 7.10035 7.17168 7.24036 7.31088 7.44884 7.79685 8.21037 8.43480 9.05537 9.23446 9.76854 10.31213 11.17164 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.015972 B = 0.006643 C = 0.005324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1752.660021 B = 4214.152281 C = 5257.774033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.127 4.127 3 C -0.124 4.124 4 C 0.140 3.860 5 H 0.081 0.919 6 C -0.160 4.160 7 N -0.738 5.738 8 C 0.488 3.512 9 O -0.533 6.533 10 C 0.178 3.822 11 H 0.117 0.883 12 C -0.140 4.140 13 N -0.532 5.532 14 C -0.248 4.248 15 H 0.067 0.933 16 C 0.008 3.992 17 N -0.894 5.894 18 Si 0.900 3.100 19 H -0.287 1.287 20 H -0.290 1.290 21 H -0.277 1.277 22 C 0.147 3.853 23 C -0.206 4.206 24 C -0.205 4.205 25 H 0.052 0.948 26 H 0.052 0.948 27 H 0.050 0.950 28 H 0.067 0.933 29 H 0.061 0.939 30 H 0.070 0.930 31 H 0.065 0.935 32 H 0.052 0.948 33 H 0.056 0.944 34 H 0.060 0.940 35 H 0.393 0.607 36 H 0.031 0.969 37 H 0.087 0.913 38 H 0.034 0.966 39 H 0.254 0.746 40 H 0.082 0.918 41 H 0.096 0.904 42 H 0.071 0.929 43 H 0.068 0.932 44 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.563 7.939 5.024 12.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.164 4.164 3 C -0.162 4.162 4 C 0.034 3.966 5 H 0.099 0.901 6 C -0.218 4.218 7 N -0.393 5.393 8 C 0.274 3.726 9 O -0.407 6.407 10 C 0.067 3.933 11 H 0.134 0.866 12 C -0.199 4.199 13 N -0.247 5.247 14 C -0.378 4.378 15 H 0.085 0.915 16 C -0.191 4.191 17 N -0.538 5.538 18 Si 0.730 3.270 19 H -0.214 1.214 20 H -0.216 1.216 21 H -0.203 1.203 22 C 0.038 3.962 23 C -0.245 4.245 24 C -0.245 4.245 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.069 0.931 28 H 0.086 0.914 29 H 0.080 0.920 30 H 0.089 0.911 31 H 0.083 0.917 32 H 0.071 0.929 33 H 0.075 0.925 34 H 0.079 0.921 35 H 0.227 0.773 36 H 0.050 0.950 37 H 0.106 0.894 38 H 0.053 0.947 39 H 0.064 0.936 40 H 0.100 0.900 41 H 0.115 0.885 42 H 0.090 0.910 43 H 0.087 0.913 44 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -8.078 7.816 5.542 12.532 hybrid contribution -0.409 -0.931 -0.306 1.062 sum -8.486 6.885 5.236 12.118 Atomic orbital electron populations 1.21770 0.96127 1.01494 1.01410 1.21538 0.95344 0.96719 1.02824 1.21895 0.94610 0.97292 1.02375 1.20823 0.92701 0.94010 0.89027 0.90064 1.22155 1.02201 0.96454 1.01028 1.46418 1.18991 1.61469 1.12377 1.22953 0.80150 0.76288 0.93167 1.90599 1.56017 1.56961 1.37151 1.20217 0.89106 0.96237 0.87778 0.86592 1.22053 0.98866 0.97357 1.01642 1.43014 1.01274 1.05731 1.74709 1.19093 1.23246 0.84888 1.10531 0.91536 1.25087 1.01513 0.98294 0.94182 1.70039 1.34493 1.34549 1.14676 0.86320 0.78211 0.85775 0.76739 1.21419 1.21648 1.20265 1.20735 0.85895 0.92656 0.96943 1.23208 0.96970 1.02909 1.01445 1.23136 1.07454 1.02580 0.91356 0.92856 0.92882 0.93070 0.91397 0.92045 0.91130 0.91673 0.92885 0.92523 0.92095 0.77288 0.95008 0.89423 0.94651 0.93556 0.89998 0.88547 0.91028 0.91315 0.89856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 9.91 37.16 0.37 -1.05 16 2 C -0.13 -1.43 5.82 -26.73 -0.16 -1.59 16 3 C -0.12 -1.32 4.75 -26.73 -0.13 -1.44 16 4 C 0.14 1.92 2.57 -67.94 -0.17 1.75 16 5 H 0.08 1.31 7.58 -51.93 -0.39 0.92 16 6 C -0.16 -2.04 9.48 37.16 0.35 -1.69 16 7 N -0.74 -11.67 4.42 -53.81 -0.24 -11.91 16 8 C 0.49 10.04 7.01 -10.98 -0.08 9.96 16 9 O -0.53 -12.56 14.55 5.56 0.08 -12.48 16 10 C 0.18 3.98 2.19 -69.08 -0.15 3.83 16 11 H 0.12 2.86 6.09 -51.93 -0.32 2.54 16 12 C -0.14 -2.81 8.96 37.16 0.33 -2.48 16 13 N -0.53 -13.26 2.50 -159.45 -0.40 -13.66 16 14 C -0.25 -6.68 8.27 -15.06 -0.12 -6.81 16 15 H 0.07 1.84 6.98 -52.49 -0.37 1.48 16 16 C 0.01 0.22 4.85 -17.43 -0.08 0.14 16 17 N -0.89 -23.81 10.45 55.49 0.58 -23.23 16 18 Si 0.90 21.25 29.59 -169.99 -5.03 16.22 16 19 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 20 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 21 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 22 C 0.15 3.38 4.75 -67.93 -0.32 3.06 16 23 C -0.21 -4.40 9.79 -26.69 -0.26 -4.67 16 24 C -0.20 -4.46 9.72 -26.70 -0.26 -4.72 16 25 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 28 H 0.07 0.86 7.75 -51.93 -0.40 0.46 16 29 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.07 0.66 8.14 -51.92 -0.42 0.24 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.05 0.62 8.14 -51.92 -0.42 0.19 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.39 5.48 8.02 -40.82 -0.33 5.15 16 36 H 0.03 0.61 6.98 -51.93 -0.36 0.25 16 37 H 0.09 2.00 7.25 -51.93 -0.38 1.62 16 38 H 0.03 0.59 7.56 -51.93 -0.39 0.20 16 39 H 0.25 6.58 8.32 -40.82 -0.34 6.24 16 40 H 0.08 1.82 7.04 -51.93 -0.37 1.46 16 41 H 0.10 2.21 6.84 -51.93 -0.35 1.86 16 42 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 43 H 0.07 1.37 8.14 -51.92 -0.42 0.95 16 44 H 0.08 1.97 8.06 -51.93 -0.42 1.55 16 LS Contribution 348.95 15.07 5.26 5.26 Total: -1.00 -28.87 348.95 -8.29 -37.17 By element: Atomic # 1 Polarization: 16.21 SS G_CDS: -7.86 Total: 8.35 kcal Atomic # 6 Polarization: -5.02 SS G_CDS: -0.68 Total: -5.71 kcal Atomic # 7 Polarization: -48.74 SS G_CDS: -0.06 Total: -48.80 kcal Atomic # 8 Polarization: -12.56 SS G_CDS: 0.08 Total: -12.48 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.03 Total: 16.22 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -28.87 -8.29 -37.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706734770.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.329 kcal (2) G-P(sol) polarization free energy of solvation -28.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds