Wall clock time and date at job start Mon Mar 30 2020 04:53:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53004 * 109.47157 * 2 1 4 4 C 1.52992 * 109.47034 * 179.97438 * 3 2 1 5 5 H 1.08999 * 109.47253 * 304.99985 * 4 3 2 6 6 C 1.53003 * 109.47126 * 185.00139 * 4 3 2 7 7 N 1.46495 * 109.47247 * 64.99895 * 4 3 2 8 8 C 1.34784 * 120.00178 * 204.99605 * 7 4 3 9 9 O 1.21277 * 119.99668 * 0.02562 * 8 7 4 10 10 C 1.50695 * 120.00059 * 179.97438 * 8 7 4 11 11 H 1.09005 * 109.47430 * 300.00635 * 10 8 7 12 12 C 1.53001 * 109.47053 * 60.00571 * 10 8 7 13 13 N 1.46502 * 109.47104 * 180.02562 * 10 8 7 14 14 C 1.36941 * 119.99812 * 121.56239 * 13 10 8 15 15 H 1.07997 * 120.00130 * 212.87651 * 14 13 10 16 16 C 1.38814 * 120.00023 * 32.87939 * 14 13 10 17 17 N 1.31620 * 120.00053 * 17.32622 * 16 14 13 18 18 Si 1.86798 * 119.99730 * 197.32756 * 16 14 13 19 19 H 1.48500 * 109.47113 * 90.00161 * 18 16 14 20 20 H 1.48502 * 109.47003 * 210.00108 * 18 16 14 21 21 H 1.48495 * 109.47554 * 329.99764 * 18 16 14 22 22 C 1.46500 * 120.00100 * 301.56413 * 13 10 8 23 23 C 1.53002 * 117.49866 * 193.77852 * 22 13 10 24 24 C 1.52999 * 117.49633 * 125.12190 * 22 13 10 25 25 H 1.08998 * 109.46911 * 59.99913 * 1 2 3 26 26 H 1.08995 * 109.46782 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47072 * 299.99993 * 1 2 3 28 28 H 1.08994 * 109.47320 * 239.99634 * 2 1 3 29 29 H 1.09006 * 109.47213 * 119.99520 * 2 1 3 30 30 H 1.09007 * 109.47097 * 59.99691 * 3 2 1 31 31 H 1.08996 * 109.46772 * 299.99963 * 3 2 1 32 32 H 1.09009 * 109.46786 * 299.99918 * 6 4 3 33 33 H 1.08994 * 109.47319 * 59.99538 * 6 4 3 34 34 H 1.09000 * 109.47235 * 180.02562 * 6 4 3 35 35 H 0.96997 * 120.00472 * 25.00291 * 7 4 3 36 36 H 1.08993 * 109.47318 * 59.99827 * 12 10 8 37 37 H 1.09002 * 109.46941 * 180.02562 * 12 10 8 38 38 H 1.09003 * 109.47214 * 299.99469 * 12 10 8 39 39 H 0.96999 * 119.99733 * 184.98378 * 17 16 14 40 40 H 1.08997 * 115.54676 * 339.44927 * 22 13 10 41 41 H 1.09002 * 117.49725 * 0.02562 * 23 22 13 42 42 H 1.09004 * 117.49630 * 145.01604 * 23 22 13 43 43 H 1.09012 * 117.49394 * 214.98068 * 24 22 13 44 44 H 1.09001 * 117.50318 * 359.97438 * 24 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9330 0.8532 0.8427 6 6 4.0800 2.8795 0.1264 7 7 4.0589 0.8586 -1.2508 8 6 5.2809 0.2920 -1.2980 9 8 5.9756 0.2653 -0.3043 10 6 5.7836 -0.3091 -2.5852 11 1 5.1111 -1.1069 -2.9007 12 6 5.8353 0.7717 -3.6668 13 7 7.1263 -0.8567 -2.3768 14 6 7.3693 -2.1833 -2.6148 15 1 8.0970 -2.7143 -2.0193 16 6 6.6801 -2.8454 -3.6216 17 7 6.0615 -2.1576 -4.5578 18 14 6.6307 -4.7125 -3.6475 19 1 5.4564 -5.1874 -2.8725 20 1 6.5217 -5.1854 -5.0510 21 1 7.8748 -5.2492 -3.0397 22 6 8.2091 0.0147 -1.9139 23 6 9.6394 -0.5178 -2.0213 24 6 8.9645 -0.4068 -0.6519 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5139 -0.8899 29 1 1.8934 -0.5138 0.8901 30 1 1.6767 1.9564 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 3.7170 3.4689 -0.7157 33 1 3.7162 3.3140 1.0575 34 1 5.1700 2.8796 0.1264 35 1 3.5032 0.8797 -2.0455 36 1 6.5077 1.5694 -3.3515 37 1 6.1985 0.3368 -4.5980 38 1 4.8361 1.1788 -3.8219 39 1 5.5203 -2.6166 -5.2192 40 1 8.0557 1.0816 -2.0760 41 1 9.7748 -1.5164 -2.4368 42 1 10.4271 0.1989 -2.2537 43 1 9.3085 0.3830 0.0161 44 1 8.6556 -1.3322 -0.1658 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000706734770.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:53:40 Heat of formation + Delta-G solvation = -22.868465 kcal Electronic energy + Delta-G solvation = -21949.939724 eV Core-core repulsion = 18902.651576 eV Total energy + Delta-G solvation = -3047.288147 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.80992 -38.69753 -37.33204 -35.56087 -34.31749 -33.34682 -31.61611 -30.14320 -27.54105 -26.17635 -24.99330 -22.96169 -22.77516 -22.07273 -21.53320 -20.90012 -18.52531 -17.90181 -17.21594 -16.56324 -16.28055 -15.95048 -15.54729 -15.42615 -14.94263 -14.58824 -14.34290 -14.17834 -13.78317 -13.57735 -13.39788 -13.12775 -12.99567 -12.86525 -12.75661 -12.68903 -12.54402 -12.34143 -12.18559 -12.07624 -11.82115 -11.69790 -11.58742 -11.48788 -11.29499 -10.90531 -10.46381 -10.32044 -9.82786 -8.48542 -7.85486 -5.39176 1.44580 1.47775 1.55281 2.00565 2.39295 2.55343 3.18726 3.44988 3.55510 3.77247 4.08334 4.12358 4.25692 4.29672 4.43266 4.49417 4.54144 4.56491 4.65887 4.72833 4.78720 4.79920 4.87042 4.92313 4.94700 4.97088 5.03687 5.10484 5.12783 5.29026 5.32775 5.35283 5.37185 5.43310 5.49429 5.54191 5.64926 5.76554 5.83076 6.41157 6.79562 7.14875 7.58294 7.85382 8.33730 9.13274 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.015972 B = 0.006643 C = 0.005324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1752.660021 B = 4214.152281 C = 5257.774033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.129 4.129 3 C -0.112 4.112 4 C 0.137 3.863 5 H 0.053 0.947 6 C -0.153 4.153 7 N -0.720 5.720 8 C 0.491 3.509 9 O -0.567 6.567 10 C 0.175 3.825 11 H 0.091 0.909 12 C -0.126 4.126 13 N -0.548 5.548 14 C -0.263 4.263 15 H 0.049 0.951 16 C -0.027 4.027 17 N -0.905 5.905 18 Si 0.953 3.047 19 H -0.287 1.287 20 H -0.287 1.287 21 H -0.279 1.279 22 C 0.128 3.872 23 C -0.193 4.193 24 C -0.197 4.197 25 H 0.062 0.938 26 H 0.049 0.951 27 H 0.063 0.937 28 H 0.048 0.952 29 H 0.046 0.954 30 H 0.093 0.907 31 H 0.084 0.916 32 H 0.069 0.931 33 H 0.080 0.920 34 H 0.030 0.970 35 H 0.405 0.595 36 H 0.035 0.965 37 H 0.059 0.941 38 H 0.068 0.932 39 H 0.255 0.745 40 H 0.090 0.910 41 H 0.075 0.925 42 H 0.103 0.897 43 H 0.090 0.910 44 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.995 9.430 5.155 14.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.167 4.167 3 C -0.150 4.150 4 C 0.033 3.967 5 H 0.072 0.928 6 C -0.211 4.211 7 N -0.374 5.374 8 C 0.277 3.723 9 O -0.445 6.445 10 C 0.065 3.935 11 H 0.109 0.891 12 C -0.185 4.185 13 N -0.264 5.264 14 C -0.393 4.393 15 H 0.067 0.933 16 C -0.225 4.225 17 N -0.549 5.549 18 Si 0.782 3.218 19 H -0.214 1.214 20 H -0.213 1.213 21 H -0.205 1.205 22 C 0.020 3.980 23 C -0.232 4.232 24 C -0.238 4.238 25 H 0.081 0.919 26 H 0.068 0.932 27 H 0.082 0.918 28 H 0.067 0.933 29 H 0.065 0.935 30 H 0.111 0.889 31 H 0.102 0.898 32 H 0.088 0.912 33 H 0.099 0.901 34 H 0.049 0.951 35 H 0.241 0.759 36 H 0.054 0.946 37 H 0.078 0.922 38 H 0.086 0.914 39 H 0.064 0.936 40 H 0.108 0.892 41 H 0.094 0.906 42 H 0.121 0.879 43 H 0.108 0.892 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -9.552 9.333 5.665 14.506 hybrid contribution 0.005 -1.372 -0.311 1.407 sum -9.547 7.961 5.354 13.534 Atomic orbital electron populations 1.21730 0.94319 1.01761 1.02529 1.21537 0.96941 0.96963 1.01218 1.21844 0.91668 0.97123 1.04363 1.21001 0.94983 0.94088 0.86674 0.92838 1.22088 1.00218 0.95740 1.03098 1.46198 1.17383 1.59926 1.13861 1.22460 0.81343 0.76590 0.91880 1.90580 1.57430 1.58670 1.37859 1.20201 0.87810 0.96161 0.89341 0.89119 1.21865 1.00783 0.96498 0.99314 1.43146 1.02675 1.05426 1.75174 1.19098 1.23494 0.86192 1.10561 0.93344 1.25621 1.01532 1.01342 0.94007 1.70124 1.34605 1.35414 1.14721 0.85498 0.77808 0.81939 0.76555 1.21428 1.21298 1.20461 1.20909 0.86356 0.92891 0.97851 1.23188 0.96954 1.02456 1.00606 1.23030 1.07268 1.01942 0.91518 0.91864 0.93150 0.91769 0.93307 0.93492 0.88890 0.89780 0.91168 0.90141 0.95085 0.75892 0.94570 0.92200 0.91351 0.93607 0.89192 0.90627 0.87862 0.89207 0.92414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.40 9.91 71.98 0.71 -1.69 16 2 C -0.13 -2.72 5.82 30.60 0.18 -2.54 16 3 C -0.11 -2.07 4.75 30.59 0.15 -1.92 16 4 C 0.14 3.57 2.57 44.99 0.12 3.69 16 5 H 0.05 1.72 7.58 -2.39 -0.02 1.70 16 6 C -0.15 -3.56 9.48 71.98 0.68 -2.88 16 7 N -0.72 -22.07 4.42 -442.55 -1.96 -24.02 16 8 C 0.49 20.30 7.01 87.65 0.61 20.91 16 9 O -0.57 -27.23 14.55 -3.02 -0.04 -27.27 16 10 C 0.18 7.95 2.19 44.24 0.10 8.05 16 11 H 0.09 4.57 6.09 -2.38 -0.01 4.55 16 12 C -0.13 -4.97 8.96 71.98 0.65 -4.32 16 13 N -0.55 -27.88 2.50 -658.39 -1.65 -29.53 16 14 C -0.26 -14.59 8.27 84.03 0.69 -13.89 16 15 H 0.05 2.80 6.98 -2.91 -0.02 2.78 16 16 C -0.03 -1.47 4.85 84.86 0.41 -1.05 16 17 N -0.91 -48.74 10.45 21.65 0.23 -48.51 16 18 Si 0.95 44.32 29.59 68.60 2.03 46.35 16 19 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 20 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 21 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 22 C 0.13 5.95 4.75 44.99 0.21 6.16 16 23 C -0.19 -8.19 9.79 30.62 0.30 -7.89 16 24 C -0.20 -8.63 9.72 30.62 0.30 -8.33 16 25 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 26 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 27 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 28 H 0.05 1.20 7.75 -2.39 -0.02 1.18 16 29 H 0.05 1.11 8.14 -2.38 -0.02 1.09 16 30 H 0.09 1.38 8.14 -2.38 -0.02 1.36 16 31 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.07 1.39 8.14 -2.38 -0.02 1.38 16 33 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.03 0.90 8.14 -2.39 -0.02 0.89 16 35 H 0.41 10.56 8.02 -92.71 -0.74 9.81 16 36 H 0.04 1.37 6.98 -2.39 -0.02 1.35 16 37 H 0.06 2.72 7.25 -2.39 -0.02 2.70 16 38 H 0.07 2.18 7.56 -2.39 -0.02 2.16 16 39 H 0.25 13.22 8.32 -92.71 -0.77 12.45 16 40 H 0.09 3.97 7.04 -2.39 -0.02 3.95 16 41 H 0.08 3.53 6.84 -2.39 -0.02 3.51 16 42 H 0.10 3.68 8.14 -2.39 -0.02 3.66 16 43 H 0.09 3.51 8.14 -2.38 -0.02 3.49 16 44 H 0.06 2.81 8.06 -2.39 -0.02 2.79 16 Total: -1.00 -63.69 348.95 3.93 -59.75 By element: Atomic # 1 Polarization: 28.74 SS G_CDS: 0.22 Total: 28.96 kcal Atomic # 6 Polarization: -10.83 SS G_CDS: 5.11 Total: -5.72 kcal Atomic # 7 Polarization: -98.68 SS G_CDS: -3.38 Total: -102.06 kcal Atomic # 8 Polarization: -27.23 SS G_CDS: -0.04 Total: -27.27 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.35 kcal Total: -63.69 3.93 -59.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706734770.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.886 kcal (2) G-P(sol) polarization free energy of solvation -63.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds