Wall clock time and date at job start Mon Mar 30 2020 05:49:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47150 * 2 1 4 4 H 1.08999 * 109.47559 * 54.99645 * 3 2 1 5 5 C 1.50706 * 109.47032 * 175.00093 * 3 2 1 6 6 H 1.08001 * 119.99930 * 119.99860 * 5 3 2 7 7 C 1.37871 * 119.99762 * 299.99926 * 5 3 2 8 8 N 1.31519 * 119.99631 * 180.02562 * 7 5 3 9 9 Si 1.86800 * 120.00377 * 359.97438 * 7 5 3 10 10 H 1.48498 * 109.46925 * 90.00223 * 9 7 5 11 11 H 1.48497 * 109.47251 * 210.00352 * 9 7 5 12 12 H 1.48507 * 109.46917 * 330.00578 * 9 7 5 13 13 N 1.46506 * 109.46824 * 294.99772 * 3 2 1 14 14 C 1.34777 * 119.99873 * 85.00531 * 13 3 2 15 15 O 1.21284 * 119.99754 * 359.97438 * 14 13 3 16 16 C 1.50696 * 120.00137 * 179.97438 * 14 13 3 17 17 C 1.53002 * 109.47300 * 179.97438 * 16 14 13 18 18 H 1.08994 * 109.47265 * 54.99769 * 17 16 14 19 19 C 1.53002 * 109.46918 * 294.99712 * 17 16 14 20 20 C 1.52999 * 109.47069 * 179.97438 * 19 17 16 21 21 C 1.53004 * 109.46641 * 60.00555 * 20 19 17 22 22 C 1.53002 * 109.46936 * 299.99526 * 21 20 19 23 23 C 1.52999 * 109.47069 * 60.00736 * 22 21 20 24 24 H 1.09000 * 109.47323 * 179.97438 * 23 22 21 25 25 N 1.46905 * 109.47448 * 59.99569 * 23 22 21 26 26 H 1.09004 * 109.47334 * 60.00501 * 1 2 3 27 27 H 1.09007 * 109.47386 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47158 * 300.00283 * 1 2 3 29 29 H 1.09000 * 109.47158 * 239.99717 * 2 1 3 30 30 H 1.09004 * 109.47130 * 120.00013 * 2 1 3 31 31 H 0.97005 * 119.99726 * 179.97438 * 8 7 5 32 32 H 0.96995 * 120.00050 * 264.72646 * 13 3 2 33 33 H 1.09004 * 109.47043 * 299.99732 * 16 14 13 34 34 H 1.09000 * 109.46978 * 59.99653 * 16 14 13 35 35 H 1.09002 * 109.47527 * 300.00126 * 19 17 16 36 36 H 1.09000 * 109.47048 * 60.00211 * 19 17 16 37 37 H 1.08994 * 109.47465 * 300.00271 * 20 19 17 38 38 H 1.09002 * 109.46965 * 179.97438 * 20 19 17 39 39 H 1.09001 * 109.46989 * 179.97438 * 21 20 19 40 40 H 1.09002 * 109.47235 * 59.99977 * 21 20 19 41 41 H 1.08994 * 109.47199 * 300.00301 * 22 21 20 42 42 H 1.09000 * 109.47048 * 180.02562 * 22 21 20 43 43 H 1.00893 * 110.99674 * 60.00000 * 25 23 22 44 44 H 1.00903 * 110.99637 * 183.95633 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8417 5 6 3.5419 1.4442 0.1238 6 1 4.1472 1.8888 -0.6524 7 6 4.1432 0.8783 1.2279 8 7 5.4540 0.8803 1.3362 9 14 3.0963 0.1100 2.5707 10 1 2.8744 -1.3260 2.2646 11 1 3.7941 0.2360 3.8755 12 1 1.7880 0.8094 2.6394 13 7 1.6524 2.0974 -1.2519 14 6 0.4351 2.6643 -1.3670 15 8 -0.3396 2.6319 -0.4344 16 6 0.0366 3.3385 -2.6545 17 6 -1.3827 3.8942 -2.5212 18 1 -1.4359 4.5503 -1.6525 19 6 -2.3690 2.7375 -2.3479 20 6 -3.7882 3.2932 -2.2140 21 6 -4.1468 4.0849 -3.4733 22 6 -3.1604 5.2416 -3.6466 23 6 -1.7412 4.6859 -3.7805 24 1 -1.0385 5.5099 -3.9044 25 7 -1.6699 3.8018 -4.9516 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 5.8770 0.4825 2.1132 32 1 2.2734 2.1265 -1.9965 33 1 0.7281 4.1540 -2.8668 34 1 0.0680 2.6144 -3.4686 35 1 -2.3159 2.0813 -3.2167 36 1 -2.1138 2.1738 -1.4506 37 1 -3.8412 3.9491 -1.3451 38 1 -4.4910 2.4691 -2.0910 39 1 -5.1580 4.4804 -3.3781 40 1 -4.0939 3.4289 -4.3422 41 1 -3.2133 5.8975 -2.7777 42 1 -3.4161 5.8059 -4.5434 43 1 -1.9027 4.3016 -5.7966 44 1 -0.7602 3.3715 -5.0249 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000710690555.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:39 Heat of formation + Delta-G solvation = -84.892071 kcal Electronic energy + Delta-G solvation = -21828.354634 eV Core-core repulsion = 18778.376942 eV Total energy + Delta-G solvation = -3049.977693 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.13960 -39.53945 -37.04494 -34.39178 -34.10537 -33.43973 -32.80711 -29.84261 -29.38194 -27.46413 -24.62090 -23.33412 -22.86498 -21.82762 -21.05333 -19.83103 -19.06812 -17.73766 -17.47671 -16.68764 -16.41812 -16.32124 -15.84806 -15.47651 -15.10338 -14.98015 -14.60803 -14.37687 -14.14101 -13.79362 -13.68644 -13.42968 -13.15175 -12.93574 -12.77196 -12.67117 -12.59189 -12.32893 -12.19640 -11.84959 -11.75210 -11.39295 -11.34080 -11.22821 -11.04292 -10.99003 -10.84790 -10.32376 -9.66990 -9.36923 -8.38875 -6.43714 1.25618 1.33741 1.43650 1.91528 2.25129 2.58395 2.97330 3.69009 3.76069 3.88369 4.06073 4.13722 4.25212 4.32302 4.34390 4.42363 4.47538 4.57842 4.59634 4.65152 4.75709 4.80080 4.87988 4.92596 5.01816 5.07221 5.14740 5.15909 5.21879 5.25795 5.41926 5.43191 5.44871 5.47629 5.52542 5.63043 5.72490 5.77801 6.16643 6.39476 6.58890 6.76360 6.99134 7.20715 7.59689 8.76415 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.035758 B = 0.004573 C = 0.004289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.860025 B = 6121.000022 C = 6527.096443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.136 4.136 3 C 0.250 3.750 4 H 0.019 0.981 5 C -0.532 4.532 6 H 0.056 0.944 7 C 0.030 3.970 8 N -0.934 5.934 9 Si 0.936 3.064 10 H -0.260 1.260 11 H -0.294 1.294 12 H -0.262 1.262 13 N -0.705 5.705 14 C 0.499 3.501 15 O -0.576 6.576 16 C -0.130 4.130 17 C -0.058 4.058 18 H 0.055 0.945 19 C -0.105 4.105 20 C -0.115 4.115 21 C -0.104 4.104 22 C -0.111 4.111 23 C 0.103 3.897 24 H 0.040 0.960 25 N -0.843 5.843 26 H 0.058 0.942 27 H 0.055 0.945 28 H 0.034 0.966 29 H 0.067 0.933 30 H 0.040 0.960 31 H 0.269 0.731 32 H 0.404 0.596 33 H 0.104 0.896 34 H 0.113 0.887 35 H 0.067 0.933 36 H 0.046 0.954 37 H 0.044 0.956 38 H 0.055 0.945 39 H 0.058 0.942 40 H 0.072 0.928 41 H 0.058 0.942 42 H 0.074 0.926 43 H 0.348 0.652 44 H 0.344 0.656 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.240 6.007 -13.572 22.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.175 4.175 3 C 0.145 3.855 4 H 0.036 0.964 5 C -0.571 4.571 6 H 0.074 0.926 7 C -0.170 4.170 8 N -0.574 5.574 9 Si 0.764 3.236 10 H -0.186 1.186 11 H -0.221 1.221 12 H -0.187 1.187 13 N -0.355 5.355 14 C 0.287 3.713 15 O -0.457 6.457 16 C -0.170 4.170 17 C -0.078 4.078 18 H 0.073 0.927 19 C -0.142 4.142 20 C -0.153 4.153 21 C -0.141 4.141 22 C -0.149 4.149 23 C -0.009 4.009 24 H 0.058 0.942 25 N -0.376 5.376 26 H 0.077 0.923 27 H 0.074 0.926 28 H 0.053 0.947 29 H 0.086 0.914 30 H 0.058 0.942 31 H 0.079 0.921 32 H 0.239 0.761 33 H 0.122 0.878 34 H 0.131 0.869 35 H 0.086 0.914 36 H 0.064 0.936 37 H 0.063 0.937 38 H 0.073 0.927 39 H 0.077 0.923 40 H 0.091 0.909 41 H 0.077 0.923 42 H 0.092 0.908 43 H 0.162 0.838 44 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -17.201 5.523 -12.447 21.939 hybrid contribution 1.331 0.206 0.536 1.450 sum -15.870 5.729 -11.911 20.653 Atomic orbital electron populations 1.21754 0.95155 1.00342 1.01676 1.22190 0.95862 0.98616 1.00795 1.18716 0.92940 0.89583 0.84277 0.96361 1.21334 0.90554 1.38329 1.06834 0.92583 1.25537 0.95690 0.95931 0.99836 1.69981 1.10234 1.46293 1.30854 0.86037 0.79241 0.79922 0.78406 1.18630 1.22104 1.18719 1.46069 1.16115 1.56495 1.16804 1.21262 0.81111 0.78167 0.90722 1.90628 1.51873 1.60799 1.42417 1.21779 0.98666 1.01790 0.94733 1.20855 0.92463 0.97199 0.97245 0.92665 1.21465 0.94213 0.97394 1.01172 1.21462 0.96457 0.99277 0.98057 1.21354 0.97783 0.97162 0.97812 1.21552 0.94038 0.97488 1.01806 1.21219 0.96566 0.92916 0.90185 0.94166 1.58691 1.36601 1.37004 1.05294 0.92289 0.92621 0.94706 0.91418 0.94151 0.92128 0.76080 0.87774 0.86899 0.91413 0.93572 0.93731 0.92672 0.92301 0.90931 0.92300 0.90760 0.83823 0.84126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.14 8.51 71.98 0.61 -4.52 16 2 C -0.14 -5.91 5.11 30.59 0.16 -5.75 16 3 C 0.25 11.77 1.83 44.24 0.08 11.85 16 4 H 0.02 0.98 6.63 -2.39 -0.02 0.97 16 5 C -0.53 -29.08 9.31 25.60 0.24 -28.84 16 6 H 0.06 3.25 7.98 -2.91 -0.02 3.22 16 7 C 0.03 1.69 5.45 84.65 0.46 2.15 16 8 N -0.93 -56.36 13.96 21.45 0.30 -56.06 16 9 Si 0.94 45.42 24.41 68.60 1.67 47.09 16 10 H -0.26 -11.91 6.83 99.48 0.68 -11.23 16 11 H -0.29 -14.07 7.11 99.48 0.71 -13.36 16 12 H -0.26 -12.73 6.53 99.48 0.65 -12.08 16 13 N -0.71 -26.70 5.02 -446.09 -2.24 -28.94 16 14 C 0.50 17.28 6.12 87.66 0.54 17.81 16 15 O -0.58 -23.94 11.10 -3.04 -0.03 -23.97 16 16 C -0.13 -3.03 4.70 29.85 0.14 -2.89 16 17 C -0.06 -1.36 1.66 -10.79 -0.02 -1.38 16 18 H 0.05 1.55 7.95 -2.39 -0.02 1.53 16 19 C -0.10 -2.70 4.79 30.59 0.15 -2.56 16 20 C -0.11 -2.62 5.92 30.60 0.18 -2.44 16 21 C -0.10 -1.87 5.77 30.60 0.18 -1.69 16 22 C -0.11 -1.81 5.61 30.59 0.17 -1.64 16 23 C 0.10 1.74 3.09 44.92 0.14 1.88 16 24 H 0.04 0.64 8.14 -2.39 -0.02 0.62 16 25 N -0.84 -11.67 7.70 -168.66 -1.30 -12.96 16 26 H 0.06 2.22 5.65 -2.38 -0.01 2.21 16 27 H 0.05 1.87 8.14 -2.38 -0.02 1.85 16 28 H 0.03 1.45 7.85 -2.39 -0.02 1.44 16 29 H 0.07 2.77 8.14 -2.39 -0.02 2.75 16 30 H 0.04 1.85 3.22 -2.38 -0.01 1.84 16 31 H 0.27 15.28 8.31 -92.70 -0.77 14.51 16 32 H 0.40 13.39 8.54 -92.71 -0.79 12.60 16 33 H 0.10 2.05 8.14 -2.38 -0.02 2.03 16 34 H 0.11 2.14 6.84 -2.39 -0.02 2.12 16 35 H 0.07 1.69 7.60 -2.39 -0.02 1.67 16 36 H 0.05 1.51 5.95 -2.39 -0.01 1.50 16 37 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 39 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 40 H 0.07 1.34 7.60 -2.39 -0.02 1.32 16 41 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 42 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 43 H 0.35 3.58 9.04 -89.70 -0.81 2.77 16 44 H 0.34 4.33 7.15 -89.69 -0.64 3.68 16 Total: -1.00 -65.86 324.10 0.11 -65.75 By element: Atomic # 1 Polarization: 28.43 SS G_CDS: -1.32 Total: 27.11 kcal Atomic # 6 Polarization: -21.04 SS G_CDS: 3.02 Total: -18.02 kcal Atomic # 7 Polarization: -94.72 SS G_CDS: -3.24 Total: -97.96 kcal Atomic # 8 Polarization: -23.94 SS G_CDS: -0.03 Total: -23.97 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 1.67 Total: 47.09 kcal Total: -65.86 0.11 -65.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710690555.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.142 kcal (2) G-P(sol) polarization free energy of solvation -65.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds