Wall clock time and date at job start Mon Mar 30 2020 05:55:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47457 * 2 1 4 4 C 1.50699 * 109.47078 * 240.00146 * 2 1 3 5 5 H 1.08003 * 120.00271 * 239.99736 * 4 2 1 6 6 C 1.37877 * 120.00384 * 59.99848 * 4 2 1 7 7 N 1.31515 * 119.99644 * 0.02562 * 6 4 2 8 8 Si 1.86790 * 120.00316 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47098 * 90.00166 * 8 6 4 10 10 H 1.48499 * 109.47317 * 209.99816 * 8 6 4 11 11 H 1.48503 * 109.47573 * 330.00206 * 8 6 4 12 12 C 1.53005 * 109.47452 * 119.99931 * 2 1 3 13 13 N 1.46500 * 109.47094 * 300.00043 * 12 2 1 14 14 C 1.34774 * 119.99881 * 179.97438 * 13 12 2 15 15 O 1.21285 * 120.00019 * 0.02562 * 14 13 12 16 16 C 1.50699 * 119.99942 * 180.02562 * 14 13 12 17 17 H 1.09002 * 109.46959 * 299.99950 * 16 14 13 18 18 C 1.52997 * 109.47078 * 59.99862 * 16 14 13 19 19 C 1.52999 * 109.47317 * 179.97438 * 18 16 14 20 20 C 1.53005 * 109.47159 * 300.00546 * 19 18 16 21 21 H 1.09002 * 109.46935 * 299.99411 * 20 19 18 22 22 N 1.46905 * 109.46858 * 179.97438 * 20 19 18 23 23 C 1.52997 * 109.47452 * 59.99536 * 20 19 18 24 24 C 1.53000 * 109.47083 * 179.97438 * 16 14 13 25 25 H 1.09001 * 109.46832 * 299.99870 * 1 2 3 26 26 H 1.08996 * 109.46952 * 59.99890 * 1 2 3 27 27 H 1.09002 * 109.46695 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47878 * 180.02562 * 3 2 1 29 29 H 1.09004 * 109.46976 * 300.00285 * 3 2 1 30 30 H 1.09001 * 109.46989 * 59.99671 * 3 2 1 31 31 H 0.96999 * 120.00073 * 179.97438 * 7 6 4 32 32 H 1.09000 * 109.47360 * 179.97438 * 12 2 1 33 33 H 1.09002 * 109.46935 * 59.99874 * 12 2 1 34 34 H 0.96998 * 119.99994 * 359.97438 * 13 12 2 35 35 H 1.08996 * 109.47853 * 300.00179 * 18 16 14 36 36 H 1.09002 * 109.47153 * 60.00207 * 18 16 14 37 37 H 1.09000 * 109.47486 * 180.02562 * 19 18 16 38 38 H 1.09002 * 109.46716 * 60.00091 * 19 18 16 39 39 H 1.00898 * 110.99881 * 60.00141 * 22 20 19 40 40 H 1.00903 * 110.99188 * 183.95024 * 22 20 19 41 41 H 1.08993 * 109.47194 * 179.97438 * 23 20 19 42 42 H 1.09002 * 109.46695 * 59.99734 * 23 20 19 43 43 H 1.08992 * 109.47399 * 299.99938 * 24 16 14 44 44 H 1.09004 * 109.46724 * 60.00424 * 24 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1315 6 6 1.6992 -0.2394 -2.4828 7 7 0.9435 0.8302 -2.6034 8 14 2.3224 -1.1195 -4.0079 9 1 1.3448 -2.1615 -4.4123 10 1 2.4872 -0.1402 -5.1120 11 1 3.6308 -1.7566 -3.7120 12 6 2.0401 -0.7212 1.2493 13 7 1.5518 -0.0306 2.4454 14 6 1.8770 -0.4914 3.6695 15 8 2.5743 -1.4775 3.7808 16 6 1.3742 0.2187 4.9000 17 1 1.7375 1.2464 4.9003 18 6 -0.1557 0.2186 4.8995 19 6 -0.6662 0.9389 6.1490 20 6 -0.1565 0.2169 7.3980 21 1 -0.5198 -0.8108 7.3972 22 7 -0.6462 0.9089 8.5977 23 6 1.3735 0.2170 7.3985 24 6 1.8834 -0.5032 6.1492 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 3.1301 1.4425 -0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 0.7095 1.1618 -3.4844 32 1 3.1301 -0.7216 1.2490 33 1 1.6767 -1.7489 1.2493 34 1 0.9944 0.7582 2.3565 35 1 -0.5189 0.7326 4.0096 36 1 -0.5190 -0.8091 4.8991 37 1 -1.7562 0.9385 6.1489 38 1 -0.3029 1.9666 6.1498 39 1 -1.6548 0.9225 8.6209 40 1 -0.2709 0.4897 9.4353 41 1 1.7365 -0.2970 8.2884 42 1 1.7367 1.2447 7.3992 43 1 1.5198 -1.5307 6.1486 44 1 2.9734 -0.5034 6.1497 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000711071120.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:46 Heat of formation + Delta-G solvation = -72.032466 kcal Electronic energy + Delta-G solvation = -21327.327784 eV Core-core repulsion = 18277.907726 eV Total energy + Delta-G solvation = -3049.420058 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.96056 -38.03488 -36.30584 -33.73498 -33.20910 -31.06493 -30.65096 -28.60266 -25.72666 -25.59973 -24.88159 -22.82956 -22.42774 -20.18003 -19.55627 -18.76494 -16.99863 -15.86702 -15.73789 -15.48209 -15.36853 -15.00909 -14.68461 -14.19023 -13.97990 -13.66563 -12.97503 -12.83542 -12.61755 -12.34833 -12.17425 -11.99612 -11.69231 -11.37067 -11.31876 -11.19187 -11.15910 -10.86060 -10.69575 -10.60222 -10.38236 -10.20077 -10.17797 -9.63210 -9.47490 -9.14243 -8.95929 -8.77992 -8.43857 -8.28407 -6.02170 -4.12204 3.09691 3.28119 3.35138 3.39061 3.76963 4.19382 4.40497 4.52189 4.61326 4.95519 5.06168 5.09920 5.24565 5.25151 5.29870 5.38293 5.43142 5.66499 5.81233 5.87843 5.91857 6.05885 6.07673 6.20609 6.26177 6.33386 6.35253 6.51681 6.79550 6.82614 6.89071 6.94436 7.02099 7.06821 7.15730 7.35995 7.55808 7.69463 8.01100 8.08600 8.17584 8.38972 8.75464 8.88888 9.53628 10.99217 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.042629 B = 0.003737 C = 0.003571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 656.666872 B = 7490.903515 C = 7838.594702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.056 3.944 3 C -0.130 4.130 4 C -0.506 4.506 5 H 0.057 0.943 6 C 0.066 3.934 7 N -0.886 5.886 8 Si 0.893 3.107 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.274 1.274 12 C 0.131 3.869 13 N -0.716 5.716 14 C 0.507 3.493 15 O -0.554 6.554 16 C -0.107 4.107 17 H 0.094 0.906 18 C -0.110 4.110 19 C -0.109 4.109 20 C 0.088 3.912 21 H 0.035 0.965 22 N -0.849 5.849 23 C -0.112 4.112 24 C -0.096 4.096 25 H 0.006 0.994 26 H 0.085 0.915 27 H 0.026 0.974 28 H 0.026 0.974 29 H 0.085 0.915 30 H 0.006 0.994 31 H 0.260 0.740 32 H 0.053 0.947 33 H 0.053 0.947 34 H 0.397 0.603 35 H 0.073 0.927 36 H 0.067 0.933 37 H 0.062 0.938 38 H 0.073 0.927 39 H 0.339 0.661 40 H 0.339 0.661 41 H 0.060 0.940 42 H 0.071 0.929 43 H 0.068 0.932 44 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.109 1.955 17.412 17.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.055 3.945 3 C -0.188 4.188 4 C -0.545 4.545 5 H 0.075 0.925 6 C -0.135 4.135 7 N -0.525 5.525 8 Si 0.721 3.279 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.199 1.199 12 C 0.009 3.991 13 N -0.367 5.367 14 C 0.292 3.708 15 O -0.433 6.433 16 C -0.129 4.129 17 H 0.113 0.887 18 C -0.148 4.148 19 C -0.147 4.147 20 C -0.023 4.023 21 H 0.053 0.947 22 N -0.379 5.379 23 C -0.150 4.150 24 C -0.134 4.134 25 H 0.025 0.975 26 H 0.104 0.896 27 H 0.045 0.955 28 H 0.045 0.955 29 H 0.104 0.896 30 H 0.025 0.975 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.232 0.768 35 H 0.091 0.909 36 H 0.086 0.914 37 H 0.081 0.919 38 H 0.092 0.908 39 H 0.152 0.848 40 H 0.152 0.848 41 H 0.079 0.921 42 H 0.089 0.911 43 H 0.086 0.914 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -3.308 2.000 17.012 17.446 hybrid contribution -0.404 -0.999 -0.718 1.295 sum -3.712 1.001 16.294 16.741 Atomic orbital electron populations 1.21822 0.97778 0.99112 1.00044 1.18349 0.92774 0.92752 0.90600 1.21826 0.98572 0.98359 1.00066 1.21000 1.31452 1.12085 0.89942 0.92474 1.24878 0.94881 0.94914 0.98844 1.69803 1.36755 1.22704 1.23207 0.86573 0.79330 0.79383 0.82597 1.20725 1.21262 1.19911 1.21699 0.98083 0.95753 0.83606 1.46336 1.52531 1.31708 1.06075 1.20557 0.80557 0.84769 0.84893 1.90653 1.38793 1.26822 1.87057 1.21353 0.96806 1.00960 0.93743 0.88740 1.21510 0.93334 1.01609 0.98363 1.21527 1.00149 1.00093 0.92919 1.21397 0.95467 0.95051 0.90375 0.94716 1.58742 1.13657 1.60980 1.04498 1.21569 0.94137 1.01511 0.97759 1.21283 1.01180 0.99248 0.91731 0.97522 0.89620 0.95506 0.95469 0.89608 0.97499 0.93018 0.92840 0.92864 0.76756 0.90882 0.91447 0.91930 0.90845 0.84822 0.84828 0.92087 0.91061 0.91351 0.90975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.91 8.08 37.16 0.30 -2.61 16 2 C 0.06 1.30 0.50 -155.66 -0.08 1.22 16 3 C -0.13 -2.94 8.08 37.16 0.30 -2.64 16 4 C -0.51 -13.32 8.01 -34.44 -0.28 -13.60 16 5 H 0.06 1.52 7.74 -52.48 -0.41 1.12 16 6 C 0.07 1.74 5.15 -17.82 -0.09 1.65 16 7 N -0.89 -23.61 9.35 55.43 0.52 -23.09 16 8 Si 0.89 20.77 29.54 -169.99 -5.02 15.75 16 9 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 10 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 12 C 0.13 2.81 4.50 -4.04 -0.02 2.79 16 13 N -0.72 -12.71 4.85 -60.29 -0.29 -13.01 16 14 C 0.51 8.71 7.15 -10.99 -0.08 8.63 16 15 O -0.55 -11.60 15.98 5.55 0.09 -11.51 16 16 C -0.11 -1.35 2.53 -91.77 -0.23 -1.58 16 17 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 18 C -0.11 -1.20 5.10 -26.73 -0.14 -1.34 16 19 C -0.11 -1.02 5.50 -26.73 -0.15 -1.16 16 20 C 0.09 0.79 3.25 -67.71 -0.22 0.57 16 21 H 0.03 0.33 8.14 -51.93 -0.42 -0.10 16 22 N -0.85 -6.55 9.25 -4.66 -0.04 -6.59 16 23 C -0.11 -1.07 5.46 -26.76 -0.15 -1.22 16 24 C -0.10 -1.14 4.49 -26.76 -0.12 -1.26 16 25 H 0.01 0.12 6.86 -51.93 -0.36 -0.24 16 26 H 0.09 2.13 6.07 -51.93 -0.32 1.81 16 27 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.09 2.14 6.07 -51.93 -0.32 1.82 16 30 H 0.01 0.12 6.86 -51.93 -0.36 -0.24 16 31 H 0.26 6.69 8.31 -40.82 -0.34 6.35 16 32 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 33 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 34 H 0.40 6.38 5.58 -40.82 -0.23 6.15 16 35 H 0.07 0.79 7.56 -51.93 -0.39 0.40 16 36 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 37 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.34 2.18 9.04 -39.29 -0.36 1.83 16 40 H 0.34 2.18 8.99 -39.29 -0.35 1.83 16 41 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.07 0.88 8.10 -51.93 -0.42 0.46 16 44 H 0.07 0.92 8.10 -51.93 -0.42 0.50 16 LS Contribution 336.94 15.07 5.08 5.08 Total: -1.00 -28.55 336.94 -8.32 -36.87 By element: Atomic # 1 Polarization: 14.77 SS G_CDS: -7.70 Total: 7.07 kcal Atomic # 6 Polarization: -9.62 SS G_CDS: -0.94 Total: -10.57 kcal Atomic # 7 Polarization: -42.87 SS G_CDS: 0.18 Total: -42.69 kcal Atomic # 8 Polarization: -11.60 SS G_CDS: 0.09 Total: -11.51 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -28.55 -8.32 -36.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711071120.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.163 kcal (2) G-P(sol) polarization free energy of solvation -28.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds