Wall clock time and date at job start Mon Mar 30 2020 05:06:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53007 * 109.46687 * 2 1 4 4 C 1.50698 * 109.47076 * 240.00187 * 2 1 3 5 5 H 1.08003 * 119.99856 * 239.99136 * 4 2 1 6 6 C 1.37875 * 120.00359 * 59.99958 * 4 2 1 7 7 N 1.31518 * 119.99964 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 120.00307 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.46995 * 59.99479 * 8 6 4 10 10 H 1.48496 * 109.47316 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.47036 * 299.99761 * 8 6 4 12 12 C 1.52997 * 109.47494 * 120.00024 * 2 1 3 13 13 N 1.46510 * 109.46986 * 300.00304 * 12 2 1 14 14 C 1.34771 * 120.00114 * 180.02562 * 13 12 2 15 15 O 1.21284 * 119.99895 * 359.97438 * 14 13 12 16 16 C 1.50698 * 120.00220 * 179.97438 * 14 13 12 17 17 C 1.52997 * 109.47092 * 179.97438 * 16 14 13 18 18 N 1.46904 * 109.46950 * 180.02562 * 17 16 14 19 19 C 1.46899 * 111.00029 * 180.02562 * 18 17 16 20 20 C 1.52997 * 109.47254 * 179.97438 * 19 18 17 21 21 C 1.53000 * 117.50165 * 243.62147 * 20 19 18 22 22 C 1.52994 * 59.99907 * 252.50793 * 21 20 19 23 23 H 1.08999 * 109.47448 * 299.99707 * 1 2 3 24 24 H 1.09000 * 109.47334 * 60.00154 * 1 2 3 25 25 H 1.09003 * 109.47012 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.46880 * 180.02562 * 3 2 1 27 27 H 1.09000 * 109.47107 * 299.99985 * 3 2 1 28 28 H 1.08994 * 109.47014 * 60.00471 * 3 2 1 29 29 H 0.96998 * 120.00283 * 180.02562 * 7 6 4 30 30 H 1.08995 * 109.47319 * 180.02562 * 12 2 1 31 31 H 1.08993 * 109.47430 * 59.99707 * 12 2 1 32 32 H 0.97003 * 119.99559 * 359.97438 * 13 12 2 33 33 H 1.09005 * 109.46937 * 59.99595 * 16 14 13 34 34 H 1.09004 * 109.47318 * 300.00112 * 16 14 13 35 35 H 1.08995 * 109.47319 * 60.00217 * 17 16 14 36 36 H 1.09003 * 109.47435 * 299.99542 * 17 16 14 37 37 H 1.00908 * 110.99583 * 303.94989 * 18 17 16 38 38 H 1.09002 * 109.47043 * 299.99792 * 19 18 17 39 39 H 1.09001 * 109.47354 * 59.99854 * 19 18 17 40 40 H 1.09003 * 115.54795 * 29.32512 * 20 19 18 41 41 H 1.09001 * 117.49810 * 359.97438 * 21 20 19 42 42 H 1.08995 * 117.50134 * 145.01745 * 21 20 19 43 43 H 1.09004 * 117.49933 * 252.50827 * 22 21 20 44 44 H 1.09002 * 117.49788 * 107.49222 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9427 0.8297 -2.6034 8 14 2.3225 -1.1195 -4.0080 9 1 1.8281 -2.5198 -4.0081 10 1 1.8269 -0.4199 -5.2205 11 1 3.8075 -1.1188 -4.0078 12 6 2.0401 -0.7212 1.2492 13 7 1.5517 -0.0306 2.4454 14 6 1.8777 -0.4907 3.6695 15 8 2.5751 -1.4768 3.7808 16 6 1.3758 0.2200 4.9000 17 6 1.8858 -0.5013 6.1492 18 7 1.3961 0.1911 7.3486 19 6 1.8675 -0.4747 8.5702 20 6 1.3389 0.2738 9.7955 21 6 2.3664 0.9273 10.7218 22 6 1.6236 -0.3326 11.1710 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 3.1299 1.4426 -0.0005 27 1 1.6765 1.9564 -0.8900 28 1 1.6766 1.9563 0.8900 29 1 0.7081 1.1609 -3.4844 30 1 3.1300 -0.7208 1.2494 31 1 1.6768 -1.7488 1.2493 32 1 0.9942 0.7582 2.3564 33 1 0.2858 0.2200 4.9003 34 1 1.7391 1.2477 4.8996 35 1 2.9758 -0.5017 6.1490 36 1 1.5221 -1.5289 6.1494 37 1 1.6656 1.1635 7.3401 38 1 1.5044 -1.5023 8.5872 39 1 2.9574 -0.4741 8.5869 40 1 0.3866 0.7862 9.6586 41 1 3.4191 0.8236 10.4586 42 1 2.0903 1.8698 11.1945 43 1 0.8587 -0.2189 11.9392 44 1 2.1876 -1.2648 11.2031 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000717230251.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:06:15 Heat of formation + Delta-G solvation = -48.955547 kcal Electronic energy + Delta-G solvation = -20134.981664 eV Core-core repulsion = 17086.562296 eV Total energy + Delta-G solvation = -3048.419368 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.79133 -38.85630 -38.14952 -36.35233 -34.97268 -32.88149 -31.67712 -27.70341 -27.55193 -27.21116 -26.00206 -23.48912 -23.12757 -21.66627 -21.07294 -20.57092 -18.39410 -17.64653 -17.45702 -16.74669 -16.66827 -16.33503 -15.90234 -15.52879 -15.06310 -14.81383 -14.78515 -14.26309 -14.05190 -13.91625 -13.67476 -13.17749 -13.08335 -12.77429 -12.66056 -12.61961 -12.36321 -12.26034 -12.20875 -12.13198 -12.07777 -11.47592 -11.27286 -11.21923 -10.89488 -10.81823 -10.66778 -10.39290 -9.91599 -9.46089 -8.02071 -6.17803 1.43753 1.44931 1.51510 1.73108 2.29107 2.48779 2.88486 3.21197 3.22916 3.83714 3.93404 4.03251 4.10321 4.15802 4.26133 4.42523 4.47012 4.51819 4.64534 4.67071 4.73317 4.80161 4.82418 4.96052 4.98694 5.01792 5.04694 5.07277 5.13085 5.20562 5.26832 5.33835 5.38793 5.61995 5.67331 5.68201 5.96340 6.16360 6.22608 6.44043 6.45398 6.71112 6.86255 7.36498 7.49681 8.96484 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.059731 B = 0.002617 C = 0.002571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 468.658872 B =10697.881400 C =10886.752893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.050 3.950 3 C -0.121 4.121 4 C -0.530 4.530 5 H 0.043 0.957 6 C 0.027 3.973 7 N -0.898 5.898 8 Si 0.945 3.055 9 H -0.278 1.278 10 H -0.282 1.282 11 H -0.277 1.277 12 C 0.147 3.853 13 N -0.711 5.711 14 C 0.503 3.497 15 O -0.598 6.598 16 C -0.125 4.125 17 C 0.082 3.918 18 N -0.685 5.685 19 C 0.090 3.910 20 C -0.157 4.157 21 C -0.182 4.182 22 C -0.177 4.177 23 H 0.039 0.961 24 H 0.062 0.938 25 H 0.016 0.984 26 H 0.017 0.983 27 H 0.062 0.938 28 H 0.040 0.960 29 H 0.260 0.740 30 H 0.036 0.964 31 H 0.035 0.965 32 H 0.410 0.590 33 H 0.119 0.881 34 H 0.118 0.882 35 H 0.025 0.975 36 H 0.062 0.938 37 H 0.350 0.650 38 H 0.068 0.932 39 H 0.029 0.971 40 H 0.113 0.887 41 H 0.092 0.908 42 H 0.103 0.897 43 H 0.104 0.896 44 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.091 3.781 21.854 22.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.049 3.951 3 C -0.179 4.179 4 C -0.568 4.568 5 H 0.061 0.939 6 C -0.173 4.173 7 N -0.537 5.537 8 Si 0.771 3.229 9 H -0.203 1.203 10 H -0.208 1.208 11 H -0.203 1.203 12 C 0.023 3.977 13 N -0.362 5.362 14 C 0.291 3.709 15 O -0.480 6.480 16 C -0.165 4.165 17 C -0.048 4.048 18 N -0.317 5.317 19 C -0.039 4.039 20 C -0.175 4.175 21 C -0.218 4.218 22 C -0.215 4.215 23 H 0.058 0.942 24 H 0.081 0.919 25 H 0.036 0.964 26 H 0.036 0.964 27 H 0.081 0.919 28 H 0.059 0.941 29 H 0.070 0.930 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.248 0.752 33 H 0.137 0.863 34 H 0.136 0.864 35 H 0.043 0.957 36 H 0.080 0.920 37 H 0.169 0.831 38 H 0.086 0.914 39 H 0.048 0.952 40 H 0.131 0.869 41 H 0.110 0.890 42 H 0.121 0.879 43 H 0.122 0.878 44 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -1.293 2.885 21.761 21.990 hybrid contribution 1.167 -0.143 -1.311 1.761 sum -0.126 2.742 20.451 20.634 Atomic orbital electron populations 1.21674 0.97052 0.98638 1.00528 1.18365 0.93313 0.93096 0.90290 1.21672 0.97864 0.97791 1.00534 1.21248 1.31742 1.12163 0.91667 0.93893 1.25458 0.95194 0.95639 1.00962 1.69897 1.36886 1.23245 1.23664 0.85828 0.78605 0.78806 0.79625 1.20329 1.20763 1.20299 1.21236 0.96858 0.95035 0.84543 1.46158 1.52754 1.31971 1.05330 1.21336 0.79552 0.84251 0.85796 1.90656 1.40711 1.28969 1.87676 1.21542 1.04345 1.00980 0.89607 1.21470 0.96832 0.97931 0.88537 1.60426 1.63557 1.06931 1.00764 1.21494 0.96546 0.97897 0.88011 1.22257 1.00867 1.04026 0.90389 1.23134 0.97457 0.97539 1.03719 1.23023 1.03758 0.97629 0.97049 0.94165 0.91907 0.96439 0.96404 0.91920 0.94142 0.93008 0.94577 0.94621 0.75223 0.86278 0.86377 0.95717 0.91983 0.83099 0.91359 0.95231 0.86932 0.88979 0.87872 0.87750 0.88740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.34 8.08 71.98 0.58 -4.76 16 2 C 0.05 2.30 0.50 -52.93 -0.03 2.27 16 3 C -0.12 -5.30 8.08 71.98 0.58 -4.72 16 4 C -0.53 -28.10 8.01 25.60 0.21 -27.90 16 5 H 0.04 2.33 7.74 -2.91 -0.02 2.31 16 6 C 0.03 1.44 5.15 84.65 0.44 1.88 16 7 N -0.90 -47.81 9.35 21.45 0.20 -47.61 16 8 Si 0.94 42.70 29.54 68.60 2.03 44.73 16 9 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 10 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 11 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 12 C 0.15 6.27 4.50 86.38 0.39 6.66 16 13 N -0.71 -23.73 4.96 -463.06 -2.30 -26.02 16 14 C 0.50 16.22 7.83 87.66 0.69 16.90 16 15 O -0.60 -24.67 15.98 -3.04 -0.05 -24.71 16 16 C -0.12 -2.65 5.96 29.85 0.18 -2.47 16 17 C 0.08 1.84 4.97 86.30 0.43 2.27 16 18 N -0.69 -12.17 6.50 -513.89 -3.34 -15.51 16 19 C 0.09 1.52 5.97 86.30 0.51 2.03 16 20 C -0.16 -2.19 5.95 -10.80 -0.06 -2.25 16 21 C -0.18 -2.16 10.18 30.59 0.31 -1.85 16 22 C -0.18 -2.13 10.25 30.59 0.31 -1.82 16 23 H 0.04 1.46 6.86 -2.39 -0.02 1.44 16 24 H 0.06 3.08 6.07 -2.39 -0.01 3.07 16 25 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 26 H 0.02 0.77 8.14 -2.38 -0.02 0.75 16 27 H 0.06 3.07 6.07 -2.39 -0.01 3.05 16 28 H 0.04 1.46 6.86 -2.39 -0.02 1.44 16 29 H 0.26 13.38 8.31 -92.71 -0.77 12.61 16 30 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.41 11.64 6.16 -92.71 -0.57 11.06 16 33 H 0.12 2.16 8.14 -2.38 -0.02 2.14 16 34 H 0.12 1.89 8.14 -2.39 -0.02 1.87 16 35 H 0.02 0.62 8.10 -2.39 -0.02 0.60 16 36 H 0.06 1.63 8.10 -2.39 -0.02 1.61 16 37 H 0.35 5.09 8.73 -89.69 -0.78 4.31 16 38 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 39 H 0.03 0.51 7.87 -2.39 -0.02 0.49 16 40 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 41 H 0.09 1.11 8.03 -2.39 -0.02 1.09 16 42 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 43 H 0.10 1.05 8.14 -2.38 -0.02 1.03 16 44 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 Total: -1.00 -61.07 351.56 0.70 -60.37 By element: Atomic # 1 Polarization: 22.89 SS G_CDS: -0.38 Total: 22.51 kcal Atomic # 6 Polarization: -18.29 SS G_CDS: 4.53 Total: -13.76 kcal Atomic # 7 Polarization: -83.71 SS G_CDS: -5.44 Total: -89.15 kcal Atomic # 8 Polarization: -24.67 SS G_CDS: -0.05 Total: -24.71 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 2.03 Total: 44.73 kcal Total: -61.07 0.70 -60.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717230251.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.417 kcal (2) G-P(sol) polarization free energy of solvation -61.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds