Wall clock time and date at job start Mon Mar 30 2020 05:49:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53000 * 109.47351 * 2 1 4 4 H 1.08992 * 109.47138 * 304.99969 * 3 2 1 5 5 C 1.50695 * 109.47381 * 184.99733 * 3 2 1 6 6 H 1.08004 * 120.00546 * 240.27913 * 5 3 2 7 7 C 1.37885 * 119.99721 * 60.00164 * 5 3 2 8 8 N 1.31514 * 120.00035 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 119.99853 * 179.97438 * 7 5 3 10 10 H 1.48494 * 109.47228 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.46793 * 120.00131 * 9 7 5 12 12 H 1.48500 * 109.47000 * 240.00224 * 9 7 5 13 13 N 1.46506 * 109.46733 * 65.00111 * 3 2 1 14 14 C 1.34781 * 119.99905 * 274.99905 * 13 3 2 15 15 O 1.21281 * 119.99724 * 0.02562 * 14 13 3 16 16 C 1.50700 * 119.99783 * 180.02562 * 14 13 3 17 17 C 1.53001 * 109.46961 * 180.02562 * 16 14 13 18 18 H 1.09003 * 109.47313 * 54.99198 * 17 16 14 19 19 N 1.46902 * 109.46815 * 294.99664 * 17 16 14 20 20 C 1.52995 * 109.47126 * 174.99878 * 17 16 14 21 21 C 1.54271 * 110.03158 * 297.16289 * 20 17 16 22 22 C 1.54887 * 104.19306 * 217.10740 * 21 20 17 23 23 C 1.54882 * 102.75112 * 37.94235 * 22 21 20 24 24 C 1.53877 * 110.03281 * 179.97438 * 20 17 16 25 25 H 1.09002 * 109.47393 * 179.97438 * 1 2 3 26 26 H 1.09006 * 109.47117 * 299.99733 * 1 2 3 27 27 H 1.08997 * 109.47484 * 59.99958 * 1 2 3 28 28 H 1.09006 * 109.47117 * 240.00267 * 2 1 3 29 29 H 1.09005 * 109.47352 * 120.00340 * 2 1 3 30 30 H 0.97000 * 119.99706 * 179.97438 * 8 7 5 31 31 H 0.97000 * 120.00135 * 95.00270 * 13 3 2 32 32 H 1.09004 * 109.46840 * 299.99648 * 16 14 13 33 33 H 1.08997 * 109.47280 * 60.00037 * 16 14 13 34 34 H 1.00902 * 110.99938 * 176.04709 * 19 17 16 35 35 H 1.00900 * 110.99997 * 300.00327 * 19 17 16 36 36 H 1.08998 * 110.01704 * 58.60364 * 20 17 16 37 37 H 1.08995 * 110.48296 * 335.78504 * 21 20 17 38 38 H 1.08996 * 110.48498 * 98.42867 * 21 20 17 39 39 H 1.09000 * 110.75690 * 279.62423 * 22 21 20 40 40 H 1.09001 * 110.91048 * 156.33083 * 22 21 20 41 41 H 1.09004 * 110.48413 * 203.37656 * 23 22 21 42 42 H 1.09009 * 110.60090 * 80.79161 * 23 22 21 43 43 H 1.08997 * 110.03150 * 238.56923 * 24 20 17 44 44 H 1.09004 * 110.02849 * 0.02562 * 24 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8417 5 6 3.5418 1.4443 -0.1238 6 1 4.1474 1.8848 0.6545 7 6 4.1432 0.8784 -1.2280 8 7 3.4061 0.3375 -2.1733 9 14 6.0049 0.8812 -1.3818 10 1 6.5987 1.5462 -0.1942 11 1 6.4970 -0.5176 -1.4630 12 1 6.3990 1.6167 -2.6102 13 7 1.6524 2.0974 1.2519 14 6 0.4350 2.6644 1.3671 15 8 -0.3396 2.6319 0.4345 16 6 0.0366 3.3385 2.6546 17 6 -1.3827 3.8942 2.5213 18 1 -2.0596 3.0940 2.2220 19 7 -1.3996 4.9554 1.5056 20 6 -1.8341 4.4680 3.8659 21 6 -1.8892 3.3488 4.9263 22 6 -3.1265 3.7028 5.7881 23 6 -4.1336 4.2342 4.7382 24 6 -3.2609 5.0314 3.7462 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5139 0.8900 30 1 3.8292 -0.0603 -2.9503 31 1 2.2719 2.1231 1.9979 32 1 0.0679 2.6143 3.4687 33 1 0.7280 4.1540 2.8669 34 1 -2.3376 5.2945 1.3526 35 1 -0.7795 5.7095 1.7601 36 1 -1.1486 5.2528 4.1856 37 1 -2.0216 2.3777 4.4494 38 1 -0.9854 3.3557 5.5354 39 1 -2.8820 4.4770 6.5153 40 1 -3.5197 2.8169 6.2867 41 1 -4.8678 4.8872 5.2103 42 1 -4.6304 3.4074 4.2305 43 1 -3.2679 6.0893 4.0089 44 1 -3.6320 4.8957 2.7303 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000718634050.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:42 Heat of formation + Delta-G solvation = -67.662634 kcal Electronic energy + Delta-G solvation = -21357.592915 eV Core-core repulsion = 18308.362347 eV Total energy + Delta-G solvation = -3049.230568 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.46731 -38.27506 -35.17240 -34.19785 -32.22436 -30.96845 -29.76815 -28.40204 -28.10263 -26.57610 -23.15273 -22.21777 -20.83481 -19.97644 -19.62955 -19.06932 -16.97626 -16.32592 -15.75194 -15.49713 -15.17990 -14.92300 -14.57338 -14.02463 -13.91169 -13.51100 -12.96564 -12.72941 -12.60352 -12.21579 -11.60285 -11.57646 -11.48283 -11.30289 -11.23835 -11.17074 -10.99056 -10.92749 -10.83792 -10.73274 -10.71641 -10.51786 -10.22823 -10.04987 -9.53031 -8.93619 -8.68724 -8.40842 -8.28052 -7.59543 -6.05007 -4.13593 3.27372 3.35118 3.37826 3.72754 4.19706 4.38069 4.42979 4.45765 4.65225 4.83811 5.09508 5.19430 5.25003 5.26153 5.39156 5.44453 5.50865 5.56247 5.58569 5.71985 5.75301 5.84117 5.90566 5.99656 6.05394 6.13185 6.19320 6.36521 6.47691 6.55158 6.76310 7.13502 7.31230 7.41151 7.48890 7.64572 7.67833 7.72503 7.87136 8.02924 8.28788 8.85657 8.93194 9.39754 9.56797 11.00300 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.035274 B = 0.003862 C = 0.003798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.602012 B = 7249.168205 C = 7370.022479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.127 4.127 3 C 0.272 3.728 4 H 0.048 0.952 5 C -0.531 4.531 6 H 0.060 0.940 7 C 0.065 3.935 8 N -0.882 5.882 9 Si 0.899 3.101 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.283 1.283 13 N -0.719 5.719 14 C 0.502 3.498 15 O -0.526 6.526 16 C -0.138 4.138 17 C 0.120 3.880 18 H 0.086 0.914 19 N -0.824 5.824 20 C -0.129 4.129 21 C -0.118 4.118 22 C -0.125 4.125 23 C -0.124 4.124 24 C -0.123 4.123 25 H 0.019 0.981 26 H 0.039 0.961 27 H 0.049 0.951 28 H 0.097 0.903 29 H 0.028 0.972 30 H 0.262 0.738 31 H 0.383 0.617 32 H 0.085 0.915 33 H 0.080 0.920 34 H 0.335 0.665 35 H 0.331 0.669 36 H 0.069 0.931 37 H 0.070 0.930 38 H 0.065 0.935 39 H 0.063 0.937 40 H 0.064 0.936 41 H 0.061 0.939 42 H 0.065 0.935 43 H 0.059 0.941 44 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.598 7.284 14.798 19.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.166 4.166 3 C 0.170 3.830 4 H 0.066 0.934 5 C -0.569 4.569 6 H 0.078 0.922 7 C -0.138 4.138 8 N -0.520 5.520 9 Si 0.727 3.273 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.209 1.209 13 N -0.368 5.368 14 C 0.287 3.713 15 O -0.403 6.403 16 C -0.179 4.179 17 C 0.008 3.992 18 H 0.104 0.896 19 N -0.352 5.352 20 C -0.150 4.150 21 C -0.157 4.157 22 C -0.163 4.163 23 C -0.162 4.162 24 C -0.160 4.160 25 H 0.038 0.962 26 H 0.058 0.942 27 H 0.068 0.932 28 H 0.115 0.885 29 H 0.047 0.953 30 H 0.073 0.927 31 H 0.215 0.785 32 H 0.104 0.896 33 H 0.099 0.901 34 H 0.149 0.851 35 H 0.143 0.857 36 H 0.087 0.913 37 H 0.089 0.911 38 H 0.083 0.917 39 H 0.082 0.918 40 H 0.083 0.917 41 H 0.079 0.921 42 H 0.084 0.916 43 H 0.078 0.922 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -10.855 6.601 13.375 18.448 hybrid contribution 1.045 0.605 1.108 1.639 sum -9.810 7.206 14.484 18.919 Atomic orbital electron populations 1.21823 0.98387 0.97747 1.01285 1.21924 0.92594 1.00074 1.01982 1.18686 0.93868 0.89004 0.81469 0.93448 1.21311 0.91012 1.38629 1.05967 0.92223 1.24894 0.98427 0.94962 0.95502 1.69914 1.34882 1.37898 1.09334 0.86438 0.85175 0.77683 0.78050 1.19817 1.20961 1.20939 1.46488 1.15079 1.56989 1.18217 1.20153 0.82680 0.79332 0.89164 1.90675 1.51216 1.58339 1.40040 1.21788 0.97459 1.00896 0.97748 1.21236 0.95843 0.94646 0.87517 0.89583 1.58753 1.13474 1.14881 1.48111 1.22719 0.96777 0.98158 0.97324 1.22415 0.97891 0.98754 0.96607 1.22494 0.95861 1.00502 0.97449 1.22349 0.97542 0.99571 0.96693 1.22226 0.94814 0.99194 0.99810 0.96157 0.94236 0.93180 0.88525 0.95294 0.92746 0.78514 0.89617 0.90110 0.85119 0.85714 0.91301 0.91116 0.91665 0.91833 0.91749 0.92069 0.91582 0.92188 0.91519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.10 8.51 37.15 0.32 -2.78 16 2 C -0.13 -3.16 5.45 -26.74 -0.15 -3.31 16 3 C 0.27 6.99 2.24 -69.08 -0.15 6.83 16 4 H 0.05 1.43 7.58 -51.93 -0.39 1.03 16 5 C -0.53 -14.30 8.73 -34.44 -0.30 -14.60 16 6 H 0.06 1.55 7.74 -52.48 -0.41 1.14 16 7 C 0.06 1.77 5.29 -17.82 -0.09 1.68 16 8 N -0.88 -25.21 11.29 55.43 0.63 -24.58 16 9 Si 0.90 20.93 29.54 -169.99 -5.02 15.91 16 10 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 11 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 12 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 13 N -0.72 -15.11 5.02 -54.93 -0.28 -15.38 16 14 C 0.50 9.89 6.26 -10.98 -0.07 9.82 16 15 O -0.53 -12.28 12.49 5.56 0.07 -12.21 16 16 C -0.14 -1.93 5.23 -27.88 -0.15 -2.08 16 17 C 0.12 1.53 1.65 -67.71 -0.11 1.42 16 18 H 0.09 1.30 7.93 -51.93 -0.41 0.89 16 19 N -0.82 -11.00 8.31 -4.67 -0.04 -11.04 16 20 C -0.13 -1.25 2.66 -89.50 -0.24 -1.49 16 21 C -0.12 -1.09 5.23 -25.07 -0.13 -1.22 16 22 C -0.13 -1.02 6.91 -24.74 -0.17 -1.20 16 23 C -0.12 -1.03 6.83 -25.05 -0.17 -1.20 16 24 C -0.12 -1.08 6.05 -25.59 -0.15 -1.24 16 25 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.04 0.87 5.64 -51.93 -0.29 0.58 16 27 H 0.05 1.23 7.85 -51.93 -0.41 0.82 16 28 H 0.10 2.66 5.95 -51.93 -0.31 2.35 16 29 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 31 H 0.38 7.08 8.54 -40.82 -0.35 6.73 16 32 H 0.09 1.04 7.12 -51.93 -0.37 0.67 16 33 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.34 3.90 7.41 -39.29 -0.29 3.60 16 35 H 0.33 3.93 9.00 -39.29 -0.35 3.57 16 36 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.07 0.71 7.77 -51.93 -0.40 0.31 16 38 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 40 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.07 0.57 8.14 -51.92 -0.42 0.15 16 43 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 44 H 0.07 0.62 6.45 -51.93 -0.34 0.29 16 LS Contribution 337.73 15.07 5.09 5.09 Total: -1.00 -30.60 337.73 -8.81 -39.40 By element: Atomic # 1 Polarization: 19.84 SS G_CDS: -7.69 Total: 12.15 kcal Atomic # 6 Polarization: -7.78 SS G_CDS: -1.57 Total: -9.35 kcal Atomic # 7 Polarization: -51.31 SS G_CDS: 0.31 Total: -51.00 kcal Atomic # 8 Polarization: -12.28 SS G_CDS: 0.07 Total: -12.21 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -30.60 -8.81 -39.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000718634050.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.260 kcal (2) G-P(sol) polarization free energy of solvation -30.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds