Wall clock time and date at job start Mon Mar 30 2020 05:49:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53000 * 109.47351 * 2 1 4 4 H 1.08992 * 109.47138 * 304.99969 * 3 2 1 5 5 C 1.50695 * 109.47381 * 184.99733 * 3 2 1 6 6 H 1.08004 * 120.00546 * 240.27913 * 5 3 2 7 7 C 1.37885 * 119.99721 * 60.00164 * 5 3 2 8 8 N 1.31514 * 120.00035 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 119.99853 * 179.97438 * 7 5 3 10 10 H 1.48494 * 109.47228 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.46793 * 120.00131 * 9 7 5 12 12 H 1.48500 * 109.47000 * 240.00224 * 9 7 5 13 13 N 1.46506 * 109.46733 * 65.00111 * 3 2 1 14 14 C 1.34781 * 119.99905 * 274.99905 * 13 3 2 15 15 O 1.21281 * 119.99724 * 0.02562 * 14 13 3 16 16 C 1.50700 * 119.99783 * 180.02562 * 14 13 3 17 17 C 1.53001 * 109.46961 * 180.02562 * 16 14 13 18 18 H 1.09003 * 109.47313 * 54.99198 * 17 16 14 19 19 N 1.46902 * 109.46815 * 294.99664 * 17 16 14 20 20 C 1.52995 * 109.47126 * 174.99878 * 17 16 14 21 21 C 1.54271 * 110.03158 * 297.16289 * 20 17 16 22 22 C 1.54887 * 104.19306 * 217.10740 * 21 20 17 23 23 C 1.54882 * 102.75112 * 37.94235 * 22 21 20 24 24 C 1.53877 * 110.03281 * 179.97438 * 20 17 16 25 25 H 1.09002 * 109.47393 * 179.97438 * 1 2 3 26 26 H 1.09006 * 109.47117 * 299.99733 * 1 2 3 27 27 H 1.08997 * 109.47484 * 59.99958 * 1 2 3 28 28 H 1.09006 * 109.47117 * 240.00267 * 2 1 3 29 29 H 1.09005 * 109.47352 * 120.00340 * 2 1 3 30 30 H 0.97000 * 119.99706 * 179.97438 * 8 7 5 31 31 H 0.97000 * 120.00135 * 95.00270 * 13 3 2 32 32 H 1.09004 * 109.46840 * 299.99648 * 16 14 13 33 33 H 1.08997 * 109.47280 * 60.00037 * 16 14 13 34 34 H 1.00902 * 110.99938 * 176.04709 * 19 17 16 35 35 H 1.00900 * 110.99997 * 300.00327 * 19 17 16 36 36 H 1.08998 * 110.01704 * 58.60364 * 20 17 16 37 37 H 1.08995 * 110.48296 * 335.78504 * 21 20 17 38 38 H 1.08996 * 110.48498 * 98.42867 * 21 20 17 39 39 H 1.09000 * 110.75690 * 279.62423 * 22 21 20 40 40 H 1.09001 * 110.91048 * 156.33083 * 22 21 20 41 41 H 1.09004 * 110.48413 * 203.37656 * 23 22 21 42 42 H 1.09009 * 110.60090 * 80.79161 * 23 22 21 43 43 H 1.08997 * 110.03150 * 238.56923 * 24 20 17 44 44 H 1.09004 * 110.02849 * 0.02562 * 24 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8417 5 6 3.5418 1.4443 -0.1238 6 1 4.1474 1.8848 0.6545 7 6 4.1432 0.8784 -1.2280 8 7 3.4061 0.3375 -2.1733 9 14 6.0049 0.8812 -1.3818 10 1 6.5987 1.5462 -0.1942 11 1 6.4970 -0.5176 -1.4630 12 1 6.3990 1.6167 -2.6102 13 7 1.6524 2.0974 1.2519 14 6 0.4350 2.6644 1.3671 15 8 -0.3396 2.6319 0.4345 16 6 0.0366 3.3385 2.6546 17 6 -1.3827 3.8942 2.5213 18 1 -2.0596 3.0940 2.2220 19 7 -1.3996 4.9554 1.5056 20 6 -1.8341 4.4680 3.8659 21 6 -1.8892 3.3488 4.9263 22 6 -3.1265 3.7028 5.7881 23 6 -4.1336 4.2342 4.7382 24 6 -3.2609 5.0314 3.7462 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5139 0.8900 30 1 3.8292 -0.0603 -2.9503 31 1 2.2719 2.1231 1.9979 32 1 0.0679 2.6143 3.4687 33 1 0.7280 4.1540 2.8669 34 1 -2.3376 5.2945 1.3526 35 1 -0.7795 5.7095 1.7601 36 1 -1.1486 5.2528 4.1856 37 1 -2.0216 2.3777 4.4494 38 1 -0.9854 3.3557 5.5354 39 1 -2.8820 4.4770 6.5153 40 1 -3.5197 2.8169 6.2867 41 1 -4.8678 4.8872 5.2103 42 1 -4.6304 3.4074 4.2305 43 1 -3.2679 6.0893 4.0089 44 1 -3.6320 4.8957 2.7303 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000718634050.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:41 Heat of formation + Delta-G solvation = -88.473262 kcal Electronic energy + Delta-G solvation = -21358.495332 eV Core-core repulsion = 18308.362347 eV Total energy + Delta-G solvation = -3050.132985 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.75598 -39.46629 -36.88160 -35.37133 -34.18018 -32.81534 -30.86151 -29.33226 -29.14679 -28.30004 -25.02965 -23.48222 -21.79255 -21.42090 -20.82033 -20.49261 -18.76638 -17.37968 -17.27856 -17.03508 -16.38100 -16.12659 -15.90174 -15.63634 -15.26425 -14.57699 -14.32915 -14.19990 -14.03639 -13.51682 -13.43445 -13.14502 -12.87834 -12.78436 -12.65036 -12.34418 -12.27748 -12.11344 -12.01249 -11.95241 -11.80875 -11.64324 -11.53471 -11.45245 -11.30797 -10.98535 -10.54624 -10.28695 -9.43851 -9.28088 -8.13061 -6.30106 1.44323 1.45238 1.57213 2.16437 2.40025 2.83213 3.15993 3.63425 3.69123 3.78001 3.92390 4.14622 4.23489 4.45603 4.52376 4.56701 4.59433 4.60772 4.70835 4.75666 4.75848 4.83585 4.86830 4.93772 4.99640 5.08793 5.11594 5.20703 5.27663 5.30477 5.38467 5.47554 5.49390 5.53710 5.60502 5.74829 5.86198 6.03809 6.23708 6.45643 6.75202 6.80581 7.21961 7.38333 7.85773 8.92348 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.035274 B = 0.003862 C = 0.003798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.602012 B = 7249.168205 C = 7370.022479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.120 4.120 3 C 0.280 3.720 4 H -0.008 1.008 5 C -0.546 4.546 6 H 0.070 0.930 7 C 0.013 3.987 8 N -0.916 5.916 9 Si 0.970 3.030 10 H -0.260 1.260 11 H -0.279 1.279 12 H -0.285 1.285 13 N -0.717 5.717 14 C 0.496 3.504 15 O -0.567 6.567 16 C -0.126 4.126 17 C 0.126 3.874 18 H 0.058 0.942 19 N -0.846 5.846 20 C -0.117 4.117 21 C -0.122 4.122 22 C -0.122 4.122 23 C -0.125 4.125 24 C -0.122 4.122 25 H 0.042 0.958 26 H 0.046 0.954 27 H 0.022 0.978 28 H 0.068 0.932 29 H 0.039 0.961 30 H 0.263 0.737 31 H 0.399 0.601 32 H 0.111 0.889 33 H 0.103 0.897 34 H 0.343 0.657 35 H 0.339 0.661 36 H 0.080 0.920 37 H 0.058 0.942 38 H 0.076 0.924 39 H 0.073 0.927 40 H 0.068 0.932 41 H 0.072 0.928 42 H 0.057 0.943 43 H 0.071 0.929 44 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.953 8.017 17.323 21.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.159 4.159 3 C 0.176 3.824 4 H 0.010 0.990 5 C -0.584 4.584 6 H 0.088 0.912 7 C -0.187 4.187 8 N -0.555 5.555 9 Si 0.795 3.205 10 H -0.184 1.184 11 H -0.205 1.205 12 H -0.211 1.211 13 N -0.368 5.368 14 C 0.283 3.717 15 O -0.446 6.446 16 C -0.166 4.166 17 C 0.014 3.986 18 H 0.076 0.924 19 N -0.376 5.376 20 C -0.138 4.138 21 C -0.160 4.160 22 C -0.160 4.160 23 C -0.163 4.163 24 C -0.160 4.160 25 H 0.061 0.939 26 H 0.064 0.936 27 H 0.041 0.959 28 H 0.086 0.914 29 H 0.058 0.942 30 H 0.073 0.927 31 H 0.233 0.767 32 H 0.129 0.871 33 H 0.121 0.879 34 H 0.157 0.843 35 H 0.152 0.848 36 H 0.099 0.901 37 H 0.077 0.923 38 H 0.095 0.905 39 H 0.092 0.908 40 H 0.087 0.913 41 H 0.091 0.909 42 H 0.076 0.924 43 H 0.090 0.910 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -10.213 7.351 15.948 20.315 hybrid contribution 0.787 0.395 0.283 0.924 sum -9.427 7.746 16.231 20.305 Atomic orbital electron populations 1.21644 0.96986 0.98837 1.00236 1.21769 0.93735 0.99434 1.00962 1.18241 0.93284 0.88965 0.81871 0.98965 1.21654 0.91732 1.38602 1.06401 0.91234 1.25795 1.03284 0.94501 0.95118 1.70071 1.36923 1.38615 1.09880 0.85335 0.79251 0.77791 0.78168 1.18426 1.20458 1.21083 1.46305 1.16193 1.57120 1.17136 1.21150 0.81473 0.78387 0.90675 1.90664 1.52187 1.59601 1.42098 1.21791 0.98508 1.01562 0.94751 1.21110 0.94450 0.93912 0.89162 0.92377 1.58724 1.14395 1.15476 1.49011 1.22578 0.97415 0.98460 0.95337 1.22445 0.99018 0.97858 0.96650 1.22488 0.95134 1.01020 0.97338 1.22367 0.97801 0.99468 0.96665 1.22219 0.94314 0.99930 0.99502 0.93866 0.93551 0.95883 0.91379 0.94233 0.92741 0.76747 0.87129 0.87915 0.84290 0.84770 0.90123 0.92325 0.90541 0.90816 0.91296 0.90935 0.92442 0.91031 0.92508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.57 8.51 71.98 0.61 -4.96 16 2 C -0.12 -6.09 5.45 30.59 0.17 -5.92 16 3 C 0.28 14.75 2.24 44.24 0.10 14.85 16 4 H -0.01 -0.48 7.58 -2.39 -0.02 -0.50 16 5 C -0.55 -29.52 8.73 25.60 0.22 -29.29 16 6 H 0.07 3.53 7.74 -2.91 -0.02 3.51 16 7 C 0.01 0.70 5.29 84.66 0.45 1.15 16 8 N -0.92 -53.65 11.29 21.45 0.24 -53.41 16 9 Si 0.97 42.82 29.54 68.60 2.03 44.85 16 10 H -0.26 -10.85 7.11 99.48 0.71 -10.15 16 11 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 12 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 13 N -0.72 -29.96 5.02 -446.09 -2.24 -32.20 16 14 C 0.50 19.43 6.26 87.66 0.55 19.97 16 15 O -0.57 -27.13 12.49 -3.03 -0.04 -27.17 16 16 C -0.13 -3.28 5.23 29.85 0.16 -3.13 16 17 C 0.13 3.08 1.65 44.91 0.07 3.15 16 18 H 0.06 1.76 7.93 -2.39 -0.02 1.74 16 19 N -0.85 -22.11 8.31 -168.68 -1.40 -23.51 16 20 C -0.12 -2.01 2.66 -10.07 -0.03 -2.03 16 21 C -0.12 -1.94 5.23 31.67 0.17 -1.77 16 22 C -0.12 -1.68 6.91 31.88 0.22 -1.46 16 23 C -0.13 -1.85 6.83 31.68 0.22 -1.63 16 24 C -0.12 -1.93 6.05 31.33 0.19 -1.74 16 25 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 26 H 0.05 2.06 5.64 -2.38 -0.01 2.05 16 27 H 0.02 1.15 7.85 -2.39 -0.02 1.13 16 28 H 0.07 3.87 5.95 -2.38 -0.01 3.85 16 29 H 0.04 1.88 8.14 -2.38 -0.02 1.86 16 30 H 0.26 14.58 8.31 -92.71 -0.77 13.81 16 31 H 0.40 14.15 8.54 -92.71 -0.79 13.36 16 32 H 0.11 2.37 7.12 -2.39 -0.02 2.36 16 33 H 0.10 2.29 8.14 -2.39 -0.02 2.27 16 34 H 0.34 7.87 7.41 -89.69 -0.66 7.21 16 35 H 0.34 7.63 9.00 -89.69 -0.81 6.82 16 36 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.06 1.08 7.77 -2.39 -0.02 1.07 16 38 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 40 H 0.07 0.89 8.14 -2.39 -0.02 0.88 16 41 H 0.07 0.91 8.14 -2.38 -0.02 0.89 16 42 H 0.06 0.94 8.14 -2.38 -0.02 0.92 16 43 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 44 H 0.06 1.02 6.45 -2.39 -0.02 1.00 16 Total: -1.00 -67.96 337.73 0.42 -67.54 By element: Atomic # 1 Polarization: 37.98 SS G_CDS: -1.26 Total: 36.71 kcal Atomic # 6 Polarization: -15.91 SS G_CDS: 3.09 Total: -12.82 kcal Atomic # 7 Polarization: -105.72 SS G_CDS: -3.40 Total: -109.12 kcal Atomic # 8 Polarization: -27.13 SS G_CDS: -0.04 Total: -27.17 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.85 kcal Total: -67.96 0.42 -67.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000718634050.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.935 kcal (2) G-P(sol) polarization free energy of solvation -67.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds