Wall clock time and date at job start Mon Mar 30 2020 05:49:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47072 * 2 1 4 4 H 1.09001 * 109.46995 * 54.34967 * 3 2 1 5 5 C 1.50697 * 109.46957 * 174.35250 * 3 2 1 6 6 H 1.08004 * 119.99902 * 87.47204 * 5 3 2 7 7 C 1.37879 * 120.00113 * 267.45861 * 5 3 2 8 8 N 1.31514 * 119.99860 * 176.06869 * 7 5 3 9 9 Si 1.86793 * 119.99948 * 356.07729 * 7 5 3 10 10 H 1.48503 * 109.47400 * 275.08324 * 9 7 5 11 11 H 1.48507 * 109.47218 * 35.08437 * 9 7 5 12 12 H 1.48500 * 109.47263 * 155.08232 * 9 7 5 13 13 N 1.46500 * 109.47016 * 294.35292 * 3 2 1 14 14 C 1.34776 * 119.99949 * 84.99728 * 13 3 2 15 15 O 1.21281 * 120.00090 * 0.02562 * 14 13 3 16 16 C 1.50704 * 119.99927 * 179.97438 * 14 13 3 17 17 C 1.53005 * 109.46808 * 180.02562 * 16 14 13 18 18 H 1.09001 * 109.47198 * 55.00184 * 17 16 14 19 19 N 1.46901 * 109.47216 * 294.99851 * 17 16 14 20 20 C 1.52999 * 109.46662 * 175.00059 * 17 16 14 21 21 C 1.54264 * 110.03412 * 297.16572 * 20 17 16 22 22 C 1.54893 * 104.19738 * 217.10812 * 21 20 17 23 23 C 1.54896 * 102.74693 * 37.93971 * 22 21 20 24 24 C 1.53876 * 110.03072 * 179.97438 * 20 17 16 25 25 H 1.08996 * 109.47467 * 300.00157 * 1 2 3 26 26 H 1.08999 * 109.47294 * 60.00338 * 1 2 3 27 27 H 1.09004 * 109.47192 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47467 * 239.99843 * 2 1 3 29 29 H 1.09004 * 109.46856 * 119.99736 * 2 1 3 30 30 H 0.97000 * 119.99899 * 180.02562 * 8 7 5 31 31 H 0.97000 * 119.99925 * 264.99957 * 13 3 2 32 32 H 1.08999 * 109.46936 * 299.99961 * 16 14 13 33 33 H 1.08995 * 109.47010 * 60.00818 * 16 14 13 34 34 H 1.00900 * 110.99912 * 176.04915 * 19 17 16 35 35 H 1.00907 * 110.99819 * 300.00357 * 19 17 16 36 36 H 1.09006 * 110.02108 * 58.61090 * 20 17 16 37 37 H 1.09000 * 110.48843 * 335.78304 * 21 20 17 38 38 H 1.08997 * 110.48808 * 98.43238 * 21 20 17 39 39 H 1.09002 * 110.75497 * 279.62876 * 22 21 20 40 40 H 1.08990 * 110.91837 * 156.33040 * 22 21 20 41 41 H 1.09003 * 110.48399 * 203.38167 * 23 22 21 42 42 H 1.08997 * 110.59634 * 80.79519 * 23 22 21 43 43 H 1.09006 * 110.03384 * 238.57069 * 24 20 17 44 44 H 1.09000 * 110.03318 * 359.97438 * 24 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5964 1.9847 0.8351 5 6 3.5404 1.4448 0.1398 6 1 4.1648 1.3737 -0.7386 7 6 4.1163 1.5379 1.3891 8 7 5.4229 1.4621 1.5182 9 14 3.0406 1.7713 2.8983 10 1 2.7490 3.2161 3.0797 11 1 1.7675 1.0282 2.7186 12 1 3.7500 1.2553 4.0965 13 7 1.6658 2.0927 -1.2583 14 6 0.4497 2.6591 -1.3886 15 8 -0.3346 2.6309 -0.4639 16 6 0.0650 3.3285 -2.6828 17 6 -1.3553 3.8856 -2.5663 18 1 -1.4169 4.5452 -1.7007 19 7 -2.3047 2.7763 -2.4052 20 6 -1.6999 4.6722 -3.8325 21 6 -0.7545 5.8827 -3.9764 22 6 -1.6565 7.0028 -4.5518 23 6 -2.9988 6.7737 -3.8136 24 6 -3.1271 5.2382 -3.7293 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 5.8280 1.5272 2.3972 31 1 2.2932 2.1156 -1.9977 32 1 0.7586 4.1432 -2.8906 33 1 0.1049 2.6014 -3.4938 34 1 -3.2422 3.1207 -2.2616 35 1 -2.2666 2.1501 -3.1956 36 1 -1.6171 4.0267 -4.7070 37 1 -0.3575 6.1744 -3.0042 38 1 0.0565 5.6533 -4.6676 39 1 -1.7821 6.8830 -5.6279 40 1 -1.2507 7.9872 -4.3190 41 1 -3.8255 7.1946 -4.3860 42 1 -2.9665 7.2095 -2.8151 43 1 -3.7361 4.8682 -4.5541 44 1 -3.5743 4.9522 -2.7773 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000718634054.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:48 Heat of formation + Delta-G solvation = -68.380776 kcal Electronic energy + Delta-G solvation = -21447.401826 eV Core-core repulsion = 18398.140117 eV Total energy + Delta-G solvation = -3049.261709 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.55524 -38.39783 -35.29202 -34.26965 -32.25239 -31.44377 -29.83044 -28.43439 -28.23113 -27.03227 -22.98052 -22.24920 -20.86175 -20.07902 -19.67796 -19.31272 -17.20691 -16.42518 -15.96862 -15.57383 -15.25139 -15.02178 -14.79869 -14.03050 -13.85139 -13.54428 -13.10962 -12.86888 -12.68553 -12.38366 -11.85079 -11.80822 -11.61767 -11.54580 -11.32680 -11.31813 -11.07071 -10.90679 -10.84813 -10.78723 -10.56686 -10.55206 -10.50850 -9.82453 -9.78309 -9.10954 -8.82158 -8.63765 -8.36360 -7.79320 -6.17415 -4.19873 3.31337 3.38780 3.47866 3.58713 4.11486 4.38094 4.39030 4.40402 4.57379 4.77329 5.03161 5.13670 5.22013 5.22878 5.35054 5.41500 5.48768 5.50655 5.55767 5.70110 5.71662 5.78731 5.87946 5.92956 6.01174 6.10509 6.15526 6.19204 6.23564 6.31889 6.41284 6.79384 6.92099 7.12543 7.17760 7.33265 7.42485 7.49179 7.59873 7.73504 8.26257 8.74548 8.85067 9.26058 9.46779 10.94593 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.027397 B = 0.004434 C = 0.004191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.762239 B = 6312.877107 C = 6679.947669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.125 4.125 3 C 0.240 3.760 4 H 0.047 0.953 5 C -0.529 4.529 6 H 0.077 0.923 7 C 0.080 3.920 8 N -0.893 5.893 9 Si 0.873 3.127 10 H -0.274 1.274 11 H -0.258 1.258 12 H -0.287 1.287 13 N -0.713 5.713 14 C 0.502 3.498 15 O -0.531 6.531 16 C -0.138 4.138 17 C 0.119 3.881 18 H 0.087 0.913 19 N -0.824 5.824 20 C -0.128 4.128 21 C -0.119 4.119 22 C -0.125 4.125 23 C -0.124 4.124 24 C -0.122 4.122 25 H 0.048 0.952 26 H 0.058 0.942 27 H 0.025 0.975 28 H 0.048 0.952 29 H 0.056 0.944 30 H 0.266 0.734 31 H 0.389 0.611 32 H 0.089 0.911 33 H 0.082 0.918 34 H 0.336 0.664 35 H 0.330 0.670 36 H 0.069 0.931 37 H 0.071 0.929 38 H 0.065 0.935 39 H 0.063 0.937 40 H 0.064 0.936 41 H 0.061 0.939 42 H 0.065 0.935 43 H 0.059 0.941 44 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.646 7.549 -12.936 20.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.164 4.164 3 C 0.137 3.863 4 H 0.065 0.935 5 C -0.567 4.567 6 H 0.095 0.905 7 C -0.124 4.124 8 N -0.529 5.529 9 Si 0.700 3.300 10 H -0.200 1.200 11 H -0.182 1.182 12 H -0.214 1.214 13 N -0.362 5.362 14 C 0.287 3.713 15 O -0.408 6.408 16 C -0.179 4.179 17 C 0.007 3.993 18 H 0.105 0.895 19 N -0.352 5.352 20 C -0.149 4.149 21 C -0.157 4.157 22 C -0.163 4.163 23 C -0.162 4.162 24 C -0.160 4.160 25 H 0.067 0.933 26 H 0.077 0.923 27 H 0.044 0.956 28 H 0.067 0.933 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.221 0.779 32 H 0.107 0.893 33 H 0.100 0.900 34 H 0.149 0.851 35 H 0.142 0.858 36 H 0.087 0.913 37 H 0.089 0.911 38 H 0.084 0.916 39 H 0.082 0.918 40 H 0.083 0.917 41 H 0.079 0.921 42 H 0.084 0.916 43 H 0.078 0.922 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -14.622 7.304 -11.437 19.948 hybrid contribution -0.453 0.473 -0.497 0.822 sum -15.075 7.777 -11.933 20.740 Atomic orbital electron populations 1.21888 0.97070 0.98530 1.02523 1.22080 0.93938 0.99599 1.00806 1.19046 0.95115 0.88960 0.83134 0.93472 1.21063 0.88950 1.51879 0.94829 0.90526 1.24920 0.94842 0.93750 0.98862 1.69889 1.09640 1.49156 1.24255 0.86911 0.81347 0.79427 0.82323 1.19991 1.18235 1.21353 1.46521 1.14823 1.56990 1.17876 1.20269 0.82291 0.79442 0.89284 1.90667 1.50184 1.58920 1.40999 1.21785 0.97356 1.01102 0.97612 1.21249 0.91065 0.91525 0.95505 0.89532 1.58776 1.09965 1.18962 1.47532 1.22706 0.95056 0.97575 0.99567 1.22423 0.97534 0.94419 1.01364 1.22494 0.95545 0.98703 0.99554 1.22351 0.97421 0.95837 1.00562 1.22224 0.96483 0.95684 1.01625 0.93328 0.92306 0.95607 0.93303 0.92527 0.92372 0.77856 0.89284 0.90005 0.85086 0.85769 0.91282 0.91069 0.91586 0.91820 0.91710 0.92062 0.91592 0.92196 0.91568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.98 8.53 37.16 0.32 -2.66 16 2 C -0.13 -2.81 5.54 -26.73 -0.15 -2.96 16 3 C 0.24 5.78 1.82 -69.08 -0.13 5.65 16 4 H 0.05 1.25 4.92 -51.93 -0.26 0.99 16 5 C -0.53 -14.43 9.05 -34.44 -0.31 -14.74 16 6 H 0.08 2.20 8.06 -52.48 -0.42 1.78 16 7 C 0.08 2.27 5.47 -17.82 -0.10 2.18 16 8 N -0.89 -26.65 13.96 55.43 0.77 -25.88 16 9 Si 0.87 22.02 26.69 -169.99 -4.54 17.48 16 10 H -0.27 -6.94 7.11 56.52 0.40 -6.54 16 11 H -0.26 -6.43 6.88 56.52 0.39 -6.04 16 12 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 13 N -0.71 -14.33 5.03 -54.93 -0.28 -14.61 16 14 C 0.50 9.39 6.29 -10.98 -0.07 9.32 16 15 O -0.53 -11.68 12.50 5.56 0.07 -11.61 16 16 C -0.14 -1.83 5.23 -27.88 -0.15 -1.98 16 17 C 0.12 1.44 1.65 -67.71 -0.11 1.33 16 18 H 0.09 1.26 7.93 -51.93 -0.41 0.85 16 19 N -0.82 -10.09 8.31 -4.66 -0.04 -10.13 16 20 C -0.13 -1.19 2.66 -89.50 -0.24 -1.42 16 21 C -0.12 -1.08 5.23 -25.07 -0.13 -1.21 16 22 C -0.13 -1.01 6.91 -24.73 -0.17 -1.19 16 23 C -0.12 -1.01 6.83 -25.04 -0.17 -1.18 16 24 C -0.12 -1.03 6.06 -25.59 -0.15 -1.19 16 25 H 0.05 1.09 7.88 -51.93 -0.41 0.68 16 26 H 0.06 1.22 5.63 -51.93 -0.29 0.93 16 27 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 29 H 0.06 1.32 7.90 -51.93 -0.41 0.91 16 30 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 31 H 0.39 6.98 8.59 -40.82 -0.35 6.63 16 32 H 0.09 1.06 7.12 -51.93 -0.37 0.69 16 33 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 34 H 0.34 3.60 7.41 -39.29 -0.29 3.31 16 35 H 0.33 3.55 9.00 -39.29 -0.35 3.19 16 36 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.07 0.72 7.77 -51.93 -0.40 0.32 16 38 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.07 0.59 6.45 -51.93 -0.34 0.25 16 LS Contribution 337.24 15.07 5.08 5.08 Total: -1.00 -31.29 337.24 -8.17 -39.46 By element: Atomic # 1 Polarization: 17.94 SS G_CDS: -7.68 Total: 10.26 kcal Atomic # 6 Polarization: -8.50 SS G_CDS: -1.56 Total: -10.06 kcal Atomic # 7 Polarization: -51.08 SS G_CDS: 0.46 Total: -50.62 kcal Atomic # 8 Polarization: -11.68 SS G_CDS: 0.07 Total: -11.61 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -4.54 Total: 17.48 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -31.29 -8.17 -39.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000718634054.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.923 kcal (2) G-P(sol) polarization free energy of solvation -31.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds