Wall clock time and date at job start Mon Mar 30 2020 05:49:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47072 * 2 1 4 4 H 1.09001 * 109.46995 * 54.34967 * 3 2 1 5 5 C 1.50697 * 109.46957 * 174.35250 * 3 2 1 6 6 H 1.08004 * 119.99902 * 87.47204 * 5 3 2 7 7 C 1.37879 * 120.00113 * 267.45861 * 5 3 2 8 8 N 1.31514 * 119.99860 * 176.06869 * 7 5 3 9 9 Si 1.86793 * 119.99948 * 356.07729 * 7 5 3 10 10 H 1.48503 * 109.47400 * 275.08324 * 9 7 5 11 11 H 1.48507 * 109.47218 * 35.08437 * 9 7 5 12 12 H 1.48500 * 109.47263 * 155.08232 * 9 7 5 13 13 N 1.46500 * 109.47016 * 294.35292 * 3 2 1 14 14 C 1.34776 * 119.99949 * 84.99728 * 13 3 2 15 15 O 1.21281 * 120.00090 * 0.02562 * 14 13 3 16 16 C 1.50704 * 119.99927 * 179.97438 * 14 13 3 17 17 C 1.53005 * 109.46808 * 180.02562 * 16 14 13 18 18 H 1.09001 * 109.47198 * 55.00184 * 17 16 14 19 19 N 1.46901 * 109.47216 * 294.99851 * 17 16 14 20 20 C 1.52999 * 109.46662 * 175.00059 * 17 16 14 21 21 C 1.54264 * 110.03412 * 297.16572 * 20 17 16 22 22 C 1.54893 * 104.19738 * 217.10812 * 21 20 17 23 23 C 1.54896 * 102.74693 * 37.93971 * 22 21 20 24 24 C 1.53876 * 110.03072 * 179.97438 * 20 17 16 25 25 H 1.08996 * 109.47467 * 300.00157 * 1 2 3 26 26 H 1.08999 * 109.47294 * 60.00338 * 1 2 3 27 27 H 1.09004 * 109.47192 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47467 * 239.99843 * 2 1 3 29 29 H 1.09004 * 109.46856 * 119.99736 * 2 1 3 30 30 H 0.97000 * 119.99899 * 180.02562 * 8 7 5 31 31 H 0.97000 * 119.99925 * 264.99957 * 13 3 2 32 32 H 1.08999 * 109.46936 * 299.99961 * 16 14 13 33 33 H 1.08995 * 109.47010 * 60.00818 * 16 14 13 34 34 H 1.00900 * 110.99912 * 176.04915 * 19 17 16 35 35 H 1.00907 * 110.99819 * 300.00357 * 19 17 16 36 36 H 1.09006 * 110.02108 * 58.61090 * 20 17 16 37 37 H 1.09000 * 110.48843 * 335.78304 * 21 20 17 38 38 H 1.08997 * 110.48808 * 98.43238 * 21 20 17 39 39 H 1.09002 * 110.75497 * 279.62876 * 22 21 20 40 40 H 1.08990 * 110.91837 * 156.33040 * 22 21 20 41 41 H 1.09003 * 110.48399 * 203.38167 * 23 22 21 42 42 H 1.08997 * 110.59634 * 80.79519 * 23 22 21 43 43 H 1.09006 * 110.03384 * 238.57069 * 24 20 17 44 44 H 1.09000 * 110.03318 * 359.97438 * 24 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5964 1.9847 0.8351 5 6 3.5404 1.4448 0.1398 6 1 4.1648 1.3737 -0.7386 7 6 4.1163 1.5379 1.3891 8 7 5.4229 1.4621 1.5182 9 14 3.0406 1.7713 2.8983 10 1 2.7490 3.2161 3.0797 11 1 1.7675 1.0282 2.7186 12 1 3.7500 1.2553 4.0965 13 7 1.6658 2.0927 -1.2583 14 6 0.4497 2.6591 -1.3886 15 8 -0.3346 2.6309 -0.4639 16 6 0.0650 3.3285 -2.6828 17 6 -1.3553 3.8856 -2.5663 18 1 -1.4169 4.5452 -1.7007 19 7 -2.3047 2.7763 -2.4052 20 6 -1.6999 4.6722 -3.8325 21 6 -0.7545 5.8827 -3.9764 22 6 -1.6565 7.0028 -4.5518 23 6 -2.9988 6.7737 -3.8136 24 6 -3.1271 5.2382 -3.7293 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 5.8280 1.5272 2.3972 31 1 2.2932 2.1156 -1.9977 32 1 0.7586 4.1432 -2.8906 33 1 0.1049 2.6014 -3.4938 34 1 -3.2422 3.1207 -2.2616 35 1 -2.2666 2.1501 -3.1956 36 1 -1.6171 4.0267 -4.7070 37 1 -0.3575 6.1744 -3.0042 38 1 0.0565 5.6533 -4.6676 39 1 -1.7821 6.8830 -5.6279 40 1 -1.2507 7.9872 -4.3190 41 1 -3.8255 7.1946 -4.3860 42 1 -2.9665 7.2095 -2.8151 43 1 -3.7361 4.8682 -4.5541 44 1 -3.5743 4.9522 -2.7773 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000718634054.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:47 Heat of formation + Delta-G solvation = -90.283824 kcal Electronic energy + Delta-G solvation = -21448.351614 eV Core-core repulsion = 18398.140117 eV Total energy + Delta-G solvation = -3050.211497 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.81160 -39.49887 -36.91440 -35.36505 -34.32257 -33.11286 -30.84800 -29.57626 -29.14548 -28.53532 -24.74478 -23.49875 -21.77851 -21.42126 -20.98077 -20.49064 -19.10330 -17.61343 -17.41368 -16.88833 -16.43208 -16.12948 -15.97540 -15.73823 -15.06815 -14.77481 -14.60393 -14.18224 -13.90727 -13.80791 -13.69432 -13.48056 -12.91255 -12.83861 -12.53671 -12.33681 -12.29525 -12.24479 -11.96706 -11.84835 -11.81299 -11.66679 -11.58450 -11.46206 -11.30793 -11.15274 -10.82459 -10.36727 -9.51409 -9.27851 -8.37554 -6.41975 1.28809 1.32888 1.45038 2.10862 2.28175 2.65658 3.06374 3.63122 3.68684 3.77383 3.91818 4.14486 4.21501 4.37565 4.44154 4.48818 4.53857 4.58361 4.64182 4.71131 4.76368 4.78554 4.86167 4.90673 4.95751 4.99556 5.08039 5.15921 5.20669 5.27054 5.33998 5.35699 5.39003 5.47177 5.48110 5.53190 5.63726 5.91539 6.20510 6.45782 6.63123 6.77434 7.13547 7.24799 7.76047 8.77774 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.027397 B = 0.004434 C = 0.004191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.762239 B = 6312.877107 C = 6679.947669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.122 4.122 3 C 0.246 3.754 4 H 0.024 0.976 5 C -0.525 4.525 6 H 0.055 0.945 7 C 0.033 3.967 8 N -0.933 5.933 9 Si 0.925 3.075 10 H -0.276 1.276 11 H -0.256 1.256 12 H -0.278 1.278 13 N -0.715 5.715 14 C 0.499 3.501 15 O -0.564 6.564 16 C -0.128 4.128 17 C 0.126 3.874 18 H 0.057 0.943 19 N -0.841 5.841 20 C -0.117 4.117 21 C -0.123 4.123 22 C -0.123 4.123 23 C -0.126 4.126 24 C -0.121 4.121 25 H 0.027 0.973 26 H 0.059 0.941 27 H 0.050 0.950 28 H 0.059 0.941 29 H 0.043 0.957 30 H 0.269 0.731 31 H 0.400 0.600 32 H 0.106 0.894 33 H 0.107 0.893 34 H 0.343 0.657 35 H 0.340 0.660 36 H 0.082 0.918 37 H 0.056 0.944 38 H 0.074 0.926 39 H 0.073 0.927 40 H 0.066 0.934 41 H 0.072 0.928 42 H 0.056 0.944 43 H 0.072 0.928 44 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.239 7.719 -14.576 23.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.162 4.162 3 C 0.141 3.859 4 H 0.042 0.958 5 C -0.564 4.564 6 H 0.073 0.927 7 C -0.167 4.167 8 N -0.572 5.572 9 Si 0.750 3.250 10 H -0.202 1.202 11 H -0.180 1.180 12 H -0.204 1.204 13 N -0.365 5.365 14 C 0.286 3.714 15 O -0.443 6.443 16 C -0.168 4.168 17 C 0.013 3.987 18 H 0.075 0.925 19 N -0.371 5.371 20 C -0.137 4.137 21 C -0.161 4.161 22 C -0.160 4.160 23 C -0.163 4.163 24 C -0.158 4.158 25 H 0.046 0.954 26 H 0.078 0.922 27 H 0.069 0.931 28 H 0.078 0.922 29 H 0.062 0.938 30 H 0.078 0.922 31 H 0.234 0.766 32 H 0.124 0.876 33 H 0.125 0.875 34 H 0.157 0.843 35 H 0.153 0.847 36 H 0.100 0.900 37 H 0.075 0.925 38 H 0.093 0.907 39 H 0.092 0.908 40 H 0.085 0.915 41 H 0.091 0.909 42 H 0.075 0.925 43 H 0.091 0.909 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -16.226 7.480 -13.107 22.160 hybrid contribution 0.036 0.430 -0.044 0.434 sum -16.190 7.911 -13.151 22.308 Atomic orbital electron populations 1.21725 0.95498 0.99838 1.01534 1.21989 0.95205 0.98263 1.00706 1.18750 0.92774 0.90045 0.84309 0.95816 1.21289 0.90611 1.50508 0.93944 0.92700 1.25564 0.95699 0.94008 1.01439 1.69982 1.11059 1.51123 1.25017 0.86087 0.79980 0.79099 0.79832 1.20208 1.18018 1.20383 1.46342 1.15979 1.57328 1.16872 1.21136 0.81038 0.78466 0.90724 1.90656 1.50979 1.59939 1.42725 1.21798 0.98380 1.01703 0.94911 1.21096 0.90416 0.91295 0.95873 0.92462 1.58736 1.10516 1.19468 1.48379 1.22574 0.95561 0.97369 0.98225 1.22453 0.97990 0.94776 1.00918 1.22491 0.95090 0.98423 1.00041 1.22370 0.98007 0.95651 1.00319 1.22213 0.96041 0.95851 1.01742 0.95351 0.92183 0.93085 0.92228 0.93802 0.92157 0.76558 0.87628 0.87461 0.84284 0.84682 0.89968 0.92543 0.90693 0.90791 0.91529 0.90934 0.92535 0.90937 0.92329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.16 8.53 71.98 0.61 -4.55 16 2 C -0.12 -5.38 5.54 30.59 0.17 -5.21 16 3 C 0.25 11.75 1.82 44.24 0.08 11.83 16 4 H 0.02 1.26 4.92 -2.39 -0.01 1.25 16 5 C -0.53 -28.88 9.05 25.60 0.23 -28.65 16 6 H 0.05 3.20 8.06 -2.91 -0.02 3.18 16 7 C 0.03 1.88 5.47 84.66 0.46 2.34 16 8 N -0.93 -56.49 13.96 21.45 0.30 -56.19 16 9 Si 0.92 45.86 26.69 68.60 1.83 47.69 16 10 H -0.28 -13.68 7.11 99.48 0.71 -12.97 16 11 H -0.26 -12.50 6.88 99.48 0.68 -11.81 16 12 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 13 N -0.71 -28.08 5.03 -446.09 -2.24 -30.32 16 14 C 0.50 18.04 6.29 87.66 0.55 18.59 16 15 O -0.56 -24.52 12.50 -3.03 -0.04 -24.55 16 16 C -0.13 -3.11 5.23 29.85 0.16 -2.95 16 17 C 0.13 2.83 1.65 44.92 0.07 2.91 16 18 H 0.06 1.64 7.93 -2.39 -0.02 1.62 16 19 N -0.84 -19.14 8.31 -168.67 -1.40 -20.54 16 20 C -0.12 -1.87 2.66 -10.07 -0.03 -1.90 16 21 C -0.12 -1.97 5.23 31.67 0.17 -1.81 16 22 C -0.12 -1.71 6.91 31.89 0.22 -1.49 16 23 C -0.13 -1.81 6.83 31.69 0.22 -1.59 16 24 C -0.12 -1.78 6.06 31.34 0.19 -1.59 16 25 H 0.03 1.23 7.88 -2.39 -0.02 1.21 16 26 H 0.06 2.38 5.63 -2.39 -0.01 2.37 16 27 H 0.05 1.77 8.14 -2.38 -0.02 1.75 16 28 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 29 H 0.04 2.01 7.90 -2.38 -0.02 1.99 16 30 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 31 H 0.40 13.89 8.59 -92.71 -0.80 13.09 16 32 H 0.11 2.26 7.12 -2.39 -0.02 2.24 16 33 H 0.11 2.12 8.14 -2.39 -0.02 2.10 16 34 H 0.34 6.87 7.41 -89.69 -0.66 6.20 16 35 H 0.34 6.45 9.00 -89.69 -0.81 5.65 16 36 H 0.08 1.16 8.14 -2.38 -0.02 1.14 16 37 H 0.06 1.07 7.77 -2.39 -0.02 1.06 16 38 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 40 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 41 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 42 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 43 H 0.07 0.91 8.14 -2.38 -0.02 0.89 16 44 H 0.06 0.96 6.45 -2.39 -0.02 0.94 16 Total: -1.00 -67.35 337.24 0.26 -67.09 By element: Atomic # 1 Polarization: 32.19 SS G_CDS: -1.29 Total: 30.90 kcal Atomic # 6 Polarization: -17.18 SS G_CDS: 3.11 Total: -14.08 kcal Atomic # 7 Polarization: -103.71 SS G_CDS: -3.35 Total: -107.05 kcal Atomic # 8 Polarization: -24.52 SS G_CDS: -0.04 Total: -24.55 kcal Atomic # 14 Polarization: 45.86 SS G_CDS: 1.83 Total: 47.69 kcal Total: -67.35 0.26 -67.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000718634054.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.192 kcal (2) G-P(sol) polarization free energy of solvation -67.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds