Wall clock time and date at job start Mon Mar 30 2020 05:47:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.09001 * 109.47326 * 54.99931 * 3 2 1 5 5 C 1.50699 * 109.47053 * 175.00035 * 3 2 1 6 6 H 1.08004 * 120.00307 * 119.99902 * 5 3 2 7 7 C 1.37884 * 119.99822 * 299.99692 * 5 3 2 8 8 N 1.31514 * 119.99701 * 180.02562 * 7 5 3 9 9 Si 1.86791 * 119.99955 * 0.02562 * 7 5 3 10 10 H 1.48500 * 109.47148 * 90.00121 * 9 7 5 11 11 H 1.48505 * 109.47168 * 209.99818 * 9 7 5 12 12 H 1.48496 * 109.47417 * 330.00051 * 9 7 5 13 13 N 1.46895 * 109.46799 * 294.99463 * 3 2 1 14 14 C 1.46846 * 111.00692 * 299.21360 * 13 3 2 15 15 C 1.53029 * 109.52748 * 174.16185 * 14 13 3 16 16 C 1.53119 * 109.28004 * 59.17473 * 15 14 13 17 17 O 1.42906 * 109.52269 * 182.44153 * 16 15 14 18 18 C 1.42903 * 113.99704 * 269.68284 * 17 16 15 19 19 C 1.53938 * 113.73336 * 246.72415 * 18 17 16 20 20 N 1.47964 * 86.18042 * 221.92474 * 19 18 17 21 21 C 1.47964 * 90.76043 * 24.69407 * 20 19 18 22 22 C 1.53115 * 109.16476 * 302.34574 * 16 15 14 23 23 C 1.46848 * 111.00134 * 174.99991 * 13 3 2 24 24 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 26 26 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 27 27 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 28 28 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 29 29 H 0.96997 * 120.00141 * 179.97438 * 8 7 5 30 30 H 1.09005 * 109.45481 * 294.17657 * 14 13 3 31 31 H 1.08997 * 109.45845 * 54.14046 * 14 13 3 32 32 H 1.09008 * 109.50510 * 299.23635 * 15 14 13 33 33 H 1.09003 * 109.50496 * 179.11950 * 15 14 13 34 34 H 1.08997 * 109.52311 * 62.25510 * 16 15 14 35 35 H 1.08990 * 112.94043 * 18.43902 * 18 17 16 36 36 H 1.09000 * 113.76014 * 336.24326 * 19 18 17 37 37 H 1.09000 * 113.75207 * 107.60672 * 19 18 17 38 38 H 1.00902 * 110.99841 * 137.58476 * 20 19 18 39 39 H 1.09005 * 113.75077 * 220.98794 * 21 20 19 40 40 H 1.09001 * 113.85778 * 89.64354 * 21 20 19 41 41 H 1.08999 * 109.50501 * 297.72029 * 22 16 15 42 42 H 1.08993 * 109.50841 * 177.59543 * 22 16 15 43 43 H 1.09004 * 109.46321 * 305.85762 * 23 13 3 44 44 H 1.08997 * 109.46421 * 65.82472 * 23 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1473 1.8889 -0.6523 7 6 4.1432 0.8784 1.2281 8 7 5.4539 0.8805 1.3363 9 14 3.0963 0.1090 2.5701 10 1 2.8755 -1.3271 2.2634 11 1 3.7936 0.2349 3.8752 12 1 1.7876 0.8074 2.6386 13 7 1.6515 2.0992 -1.2553 14 6 2.2355 1.4097 -2.4128 15 6 1.6949 2.0291 -3.7035 16 6 2.0526 3.5175 -3.7384 17 8 1.5013 4.1136 -4.9144 18 6 2.3746 4.0840 -6.0451 19 6 2.8584 5.4757 -6.4909 20 7 2.6316 5.0024 -7.8744 21 6 1.6379 4.0164 -7.3951 22 6 1.4735 4.2029 -2.4978 23 6 2.0207 3.5204 -1.2420 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 0.5139 0.8900 27 1 1.8934 -0.5137 0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 5.8770 0.4827 2.1133 30 1 3.3204 1.5126 -2.3872 31 1 1.9701 0.3531 -2.3779 32 1 0.6114 1.9144 -3.7362 33 1 2.1406 1.5274 -4.5624 34 1 3.1366 3.6316 -3.7451 35 1 3.1747 3.3507 -5.9448 36 1 2.1964 6.2878 -6.1905 37 1 3.9055 5.6712 -6.2598 38 1 2.1909 5.7174 -8.4335 39 1 1.7099 3.0461 -7.8866 40 1 0.6183 4.4000 -7.3588 41 1 0.3866 4.1223 -2.5114 42 1 1.7611 5.2542 -2.4952 43 1 1.5992 3.9969 -0.3568 44 1 3.1065 3.6134 -1.2219 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000724459189.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:21 Heat of formation + Delta-G solvation = -8.605428 kcal Electronic energy + Delta-G solvation = -21719.422840 eV Core-core repulsion = 18672.753184 eV Total energy + Delta-G solvation = -3046.669655 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.88315 -38.63460 -36.53482 -33.97481 -32.00021 -30.53142 -30.16506 -27.14080 -26.43950 -26.20859 -23.38229 -22.85654 -22.06198 -20.25547 -19.82999 -19.04463 -17.65622 -16.69025 -16.43434 -15.61183 -14.83891 -14.57163 -14.27637 -14.23291 -13.67347 -13.57823 -13.45374 -12.85165 -12.79534 -12.56156 -12.25427 -12.06513 -11.86746 -11.82591 -11.47101 -11.19013 -11.03797 -10.79383 -10.69491 -10.58053 -10.39744 -10.04822 -9.97669 -9.69569 -9.57173 -9.29465 -9.23461 -9.13548 -8.58876 -7.18133 -6.14499 -4.15303 3.23968 3.35358 3.37324 3.61841 3.90140 4.35206 4.38490 4.83298 4.87568 5.10278 5.15318 5.15735 5.18908 5.22566 5.44488 5.50966 5.56051 5.71474 5.76602 5.79514 5.94008 5.99148 6.00142 6.05441 6.07604 6.19657 6.28979 6.32456 6.43089 6.50926 6.67563 6.70142 6.79450 6.80926 6.91645 6.92003 7.08672 7.23236 7.38376 7.54300 8.07419 8.13814 8.42108 8.87068 9.49163 10.98271 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.031663 B = 0.004481 C = 0.004228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.092310 B = 6247.774552 C = 6620.989482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.123 4.123 3 C 0.181 3.819 4 H 0.039 0.961 5 C -0.545 4.545 6 H 0.075 0.925 7 C 0.074 3.926 8 N -0.898 5.898 9 Si 0.887 3.113 10 H -0.278 1.278 11 H -0.299 1.299 12 H -0.264 1.264 13 N -0.525 5.525 14 C 0.060 3.940 15 C -0.134 4.134 16 C 0.090 3.910 17 O -0.372 6.372 18 C 0.061 3.939 19 C -0.015 4.015 20 N -0.635 5.635 21 C 0.005 3.995 22 C -0.109 4.109 23 C 0.065 3.935 24 H 0.033 0.967 25 H 0.062 0.938 26 H 0.041 0.959 27 H 0.047 0.953 28 H 0.059 0.941 29 H 0.264 0.736 30 H 0.043 0.957 31 H 0.074 0.926 32 H 0.071 0.929 33 H 0.056 0.944 34 H 0.058 0.942 35 H 0.095 0.905 36 H 0.075 0.925 37 H 0.090 0.910 38 H 0.323 0.677 39 H 0.092 0.908 40 H 0.075 0.925 41 H 0.072 0.928 42 H 0.062 0.938 43 H 0.070 0.930 44 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.367 5.642 -12.348 15.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.161 4.161 3 C 0.073 3.927 4 H 0.057 0.943 5 C -0.584 4.584 6 H 0.093 0.907 7 C -0.129 4.129 8 N -0.536 5.536 9 Si 0.718 3.282 10 H -0.205 1.205 11 H -0.226 1.226 12 H -0.188 1.188 13 N -0.249 5.249 14 C -0.069 4.069 15 C -0.172 4.172 16 C 0.033 3.967 17 O -0.290 6.290 18 C 0.002 3.998 19 C -0.145 4.145 20 N -0.261 5.261 21 C -0.125 4.125 22 C -0.147 4.147 23 C -0.064 4.064 24 H 0.052 0.948 25 H 0.081 0.919 26 H 0.061 0.939 27 H 0.065 0.935 28 H 0.078 0.922 29 H 0.073 0.927 30 H 0.061 0.939 31 H 0.092 0.908 32 H 0.090 0.910 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.113 0.887 36 H 0.093 0.907 37 H 0.108 0.892 38 H 0.135 0.865 39 H 0.110 0.890 40 H 0.093 0.907 41 H 0.090 0.910 42 H 0.081 0.919 43 H 0.088 0.912 44 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -8.212 5.205 -12.504 15.839 hybrid contribution 0.021 -0.065 1.138 1.140 sum -8.191 5.140 -11.366 14.923 Atomic orbital electron populations 1.21737 0.97333 0.99347 1.01695 1.21961 0.94090 0.99346 1.00662 1.19711 0.94510 0.90514 0.87943 0.94296 1.21617 0.90630 1.39030 1.07083 0.90676 1.24983 0.94715 0.95304 0.97862 1.69913 1.08861 1.45055 1.29732 0.86850 0.80716 0.79837 0.80825 1.20549 1.22633 1.18837 1.62328 1.58001 1.01323 1.03297 1.21915 0.97759 0.98259 0.88932 1.22122 1.02254 0.94867 0.97971 1.22316 0.96876 0.92895 0.84624 1.87952 1.41950 1.79891 1.19229 1.24092 0.93271 0.96609 0.85829 1.24331 1.02558 0.98052 0.89547 1.66821 1.35157 1.14065 1.10074 1.24041 0.95804 0.98621 0.94075 1.21673 1.01665 0.98476 0.92852 1.21835 0.99039 0.89666 0.95857 0.94826 0.91917 0.93937 0.93528 0.92201 0.92657 0.93858 0.90814 0.91011 0.92526 0.92413 0.88711 0.90718 0.89210 0.86471 0.88996 0.90675 0.90969 0.91931 0.91170 0.93838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.58 9.80 37.16 0.36 -2.21 16 2 C -0.12 -2.60 4.72 -26.73 -0.13 -2.73 16 3 C 0.18 4.09 1.34 -68.86 -0.09 4.00 16 4 H 0.04 0.93 7.14 -51.93 -0.37 0.56 16 5 C -0.55 -14.51 7.77 -34.44 -0.27 -14.78 16 6 H 0.08 2.18 6.08 -52.48 -0.32 1.86 16 7 C 0.07 2.07 5.45 -17.82 -0.10 1.97 16 8 N -0.90 -26.83 13.96 55.43 0.77 -26.06 16 9 Si 0.89 21.59 24.41 -169.99 -4.15 17.44 16 10 H -0.28 -6.64 6.83 56.52 0.39 -6.26 16 11 H -0.30 -7.34 7.11 56.52 0.40 -6.94 16 12 H -0.26 -6.15 6.53 56.52 0.37 -5.78 16 13 N -0.53 -10.27 4.10 -228.08 -0.93 -11.20 16 14 C 0.06 1.10 4.80 -3.84 -0.02 1.08 16 15 C -0.13 -2.05 5.72 -26.65 -0.15 -2.20 16 16 C 0.09 1.33 2.55 -26.61 -0.07 1.27 16 17 O -0.37 -5.15 10.02 -35.23 -0.35 -5.51 16 18 C 0.06 0.72 4.33 -25.80 -0.11 0.61 16 19 C -0.01 -0.15 8.73 -2.76 -0.02 -0.18 16 20 N -0.63 -6.37 8.53 -117.21 -1.00 -7.37 16 21 C 0.00 0.05 8.73 -2.76 -0.02 0.02 16 22 C -0.11 -1.66 5.75 -26.65 -0.15 -1.81 16 23 C 0.06 1.18 5.12 -3.83 -0.02 1.16 16 24 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.06 1.08 7.75 -51.93 -0.40 0.68 16 26 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.05 1.06 3.21 -51.93 -0.17 0.89 16 28 H 0.06 1.25 6.05 -51.93 -0.31 0.93 16 29 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 30 H 0.04 0.90 6.62 -51.93 -0.34 0.56 16 31 H 0.07 1.37 5.93 -51.93 -0.31 1.06 16 32 H 0.07 1.11 8.14 -51.92 -0.42 0.69 16 33 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.06 0.88 7.72 -51.93 -0.40 0.48 16 35 H 0.10 1.14 7.76 -51.93 -0.40 0.74 16 36 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.32 2.61 8.91 -39.29 -0.35 2.26 16 39 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 40 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 41 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 42 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.07 1.27 8.08 -51.93 -0.42 0.85 16 44 H 0.04 0.89 6.96 -51.93 -0.36 0.53 16 LS Contribution 328.26 15.07 4.95 4.95 Total: -1.00 -28.74 328.26 -9.08 -37.82 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: -7.57 Total: 3.73 kcal Atomic # 6 Polarization: -13.00 SS G_CDS: -0.79 Total: -13.79 kcal Atomic # 7 Polarization: -43.47 SS G_CDS: -1.16 Total: -44.64 kcal Atomic # 8 Polarization: -5.15 SS G_CDS: -0.35 Total: -5.51 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.15 Total: 17.44 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -28.74 -9.08 -37.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724459189.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.211 kcal (2) G-P(sol) polarization free energy of solvation -28.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds