Wall clock time and date at job start Mon Mar 30 2020 05:47:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.09001 * 109.47326 * 54.99931 * 3 2 1 5 5 C 1.50699 * 109.47053 * 175.00035 * 3 2 1 6 6 H 1.08004 * 120.00307 * 119.99902 * 5 3 2 7 7 C 1.37884 * 119.99822 * 299.99692 * 5 3 2 8 8 N 1.31514 * 119.99701 * 180.02562 * 7 5 3 9 9 Si 1.86791 * 119.99955 * 0.02562 * 7 5 3 10 10 H 1.48500 * 109.47148 * 90.00121 * 9 7 5 11 11 H 1.48505 * 109.47168 * 209.99818 * 9 7 5 12 12 H 1.48496 * 109.47417 * 330.00051 * 9 7 5 13 13 N 1.46895 * 109.46799 * 294.99463 * 3 2 1 14 14 C 1.46846 * 111.00692 * 299.21360 * 13 3 2 15 15 C 1.53029 * 109.52748 * 174.16185 * 14 13 3 16 16 C 1.53119 * 109.28004 * 59.17473 * 15 14 13 17 17 O 1.42906 * 109.52269 * 182.44153 * 16 15 14 18 18 C 1.42903 * 113.99704 * 269.68284 * 17 16 15 19 19 C 1.53938 * 113.73336 * 246.72415 * 18 17 16 20 20 N 1.47964 * 86.18042 * 221.92474 * 19 18 17 21 21 C 1.47964 * 90.76043 * 24.69407 * 20 19 18 22 22 C 1.53115 * 109.16476 * 302.34574 * 16 15 14 23 23 C 1.46848 * 111.00134 * 174.99991 * 13 3 2 24 24 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 26 26 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 27 27 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 28 28 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 29 29 H 0.96997 * 120.00141 * 179.97438 * 8 7 5 30 30 H 1.09005 * 109.45481 * 294.17657 * 14 13 3 31 31 H 1.08997 * 109.45845 * 54.14046 * 14 13 3 32 32 H 1.09008 * 109.50510 * 299.23635 * 15 14 13 33 33 H 1.09003 * 109.50496 * 179.11950 * 15 14 13 34 34 H 1.08997 * 109.52311 * 62.25510 * 16 15 14 35 35 H 1.08990 * 112.94043 * 18.43902 * 18 17 16 36 36 H 1.09000 * 113.76014 * 336.24326 * 19 18 17 37 37 H 1.09000 * 113.75207 * 107.60672 * 19 18 17 38 38 H 1.00902 * 110.99841 * 137.58476 * 20 19 18 39 39 H 1.09005 * 113.75077 * 220.98794 * 21 20 19 40 40 H 1.09001 * 113.85778 * 89.64354 * 21 20 19 41 41 H 1.08999 * 109.50501 * 297.72029 * 22 16 15 42 42 H 1.08993 * 109.50841 * 177.59543 * 22 16 15 43 43 H 1.09004 * 109.46321 * 305.85762 * 23 13 3 44 44 H 1.08997 * 109.46421 * 65.82472 * 23 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1473 1.8889 -0.6523 7 6 4.1432 0.8784 1.2281 8 7 5.4539 0.8805 1.3363 9 14 3.0963 0.1090 2.5701 10 1 2.8755 -1.3271 2.2634 11 1 3.7936 0.2349 3.8752 12 1 1.7876 0.8074 2.6386 13 7 1.6515 2.0992 -1.2553 14 6 2.2355 1.4097 -2.4128 15 6 1.6949 2.0291 -3.7035 16 6 2.0526 3.5175 -3.7384 17 8 1.5013 4.1136 -4.9144 18 6 2.3746 4.0840 -6.0451 19 6 2.8584 5.4757 -6.4909 20 7 2.6316 5.0024 -7.8744 21 6 1.6379 4.0164 -7.3951 22 6 1.4735 4.2029 -2.4978 23 6 2.0207 3.5204 -1.2420 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 0.5139 0.8900 27 1 1.8934 -0.5137 0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 5.8770 0.4827 2.1133 30 1 3.3204 1.5126 -2.3872 31 1 1.9701 0.3531 -2.3779 32 1 0.6114 1.9144 -3.7362 33 1 2.1406 1.5274 -4.5624 34 1 3.1366 3.6316 -3.7451 35 1 3.1747 3.3507 -5.9448 36 1 2.1964 6.2878 -6.1905 37 1 3.9055 5.6712 -6.2598 38 1 2.1909 5.7174 -8.4335 39 1 1.7099 3.0461 -7.8866 40 1 0.6183 4.4000 -7.3588 41 1 0.3866 4.1223 -2.5114 42 1 1.7611 5.2542 -2.4952 43 1 1.5992 3.9969 -0.3568 44 1 3.1065 3.6134 -1.2219 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000724459189.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:20 Heat of formation + Delta-G solvation = -30.555204 kcal Electronic energy + Delta-G solvation = -21720.374654 eV Core-core repulsion = 18672.753184 eV Total energy + Delta-G solvation = -3047.621469 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.91440 -39.98219 -37.79836 -35.51245 -34.01584 -31.95999 -31.57377 -28.84262 -27.51233 -27.00778 -25.04182 -24.30625 -23.57989 -21.53805 -21.08485 -20.59426 -18.67133 -18.59110 -17.65455 -17.04145 -16.17410 -15.99411 -15.75282 -15.50611 -15.13874 -14.95278 -14.60733 -14.56788 -14.04916 -13.79926 -13.65856 -13.54580 -13.33082 -13.10097 -12.93583 -12.70741 -12.58706 -12.14421 -12.06846 -11.99923 -11.85605 -11.66791 -11.40215 -11.36318 -11.23598 -11.09635 -10.67476 -10.31898 -10.04940 -8.91451 -8.31653 -6.35592 1.30038 1.35655 1.45861 2.30662 2.56888 3.04193 3.08995 3.27611 3.51235 3.84322 3.92454 4.02612 4.19393 4.24552 4.31710 4.37217 4.38330 4.46498 4.56374 4.61368 4.65085 4.69066 4.76022 4.79865 4.89570 4.91986 4.92879 5.00950 5.01348 5.07601 5.13582 5.21616 5.26025 5.28633 5.37392 5.47846 5.55223 5.63118 6.15681 6.22411 6.29090 6.39604 6.50768 6.72891 7.32900 8.84712 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.031663 B = 0.004481 C = 0.004228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.092310 B = 6247.774552 C = 6620.989482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.124 4.124 3 C 0.183 3.817 4 H 0.032 0.968 5 C -0.537 4.537 6 H 0.035 0.965 7 C 0.016 3.984 8 N -0.948 5.948 9 Si 0.947 3.053 10 H -0.268 1.268 11 H -0.303 1.303 12 H -0.244 1.244 13 N -0.515 5.515 14 C 0.064 3.936 15 C -0.122 4.122 16 C 0.096 3.904 17 O -0.373 6.373 18 C 0.047 3.953 19 C -0.011 4.011 20 N -0.642 5.642 21 C 0.013 3.987 22 C -0.098 4.098 23 C 0.065 3.935 24 H 0.056 0.944 25 H 0.069 0.931 26 H 0.044 0.956 27 H 0.034 0.966 28 H 0.058 0.942 29 H 0.264 0.736 30 H 0.008 0.992 31 H 0.074 0.926 32 H 0.080 0.920 33 H 0.071 0.929 34 H 0.046 0.954 35 H 0.088 0.912 36 H 0.082 0.918 37 H 0.088 0.912 38 H 0.336 0.664 39 H 0.099 0.901 40 H 0.084 0.916 41 H 0.081 0.919 42 H 0.077 0.923 43 H 0.072 0.928 44 H 0.011 0.989 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.090 5.652 -13.289 18.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.161 4.161 3 C 0.075 3.925 4 H 0.050 0.950 5 C -0.576 4.576 6 H 0.054 0.946 7 C -0.181 4.181 8 N -0.589 5.589 9 Si 0.774 3.226 10 H -0.194 1.194 11 H -0.231 1.231 12 H -0.168 1.168 13 N -0.238 5.238 14 C -0.065 4.065 15 C -0.160 4.160 16 C 0.038 3.962 17 O -0.292 6.292 18 C -0.012 4.012 19 C -0.141 4.141 20 N -0.269 5.269 21 C -0.117 4.117 22 C -0.136 4.136 23 C -0.064 4.064 24 H 0.075 0.925 25 H 0.088 0.912 26 H 0.064 0.936 27 H 0.052 0.948 28 H 0.077 0.923 29 H 0.073 0.927 30 H 0.027 0.973 31 H 0.092 0.908 32 H 0.099 0.901 33 H 0.089 0.911 34 H 0.065 0.935 35 H 0.106 0.894 36 H 0.100 0.900 37 H 0.106 0.894 38 H 0.149 0.851 39 H 0.117 0.883 40 H 0.102 0.898 41 H 0.099 0.901 42 H 0.096 0.904 43 H 0.090 0.910 44 H 0.029 0.971 Dipole moment (debyes) X Y Z Total from point charges -10.963 5.229 -13.477 18.143 hybrid contribution 0.944 0.003 1.316 1.619 sum -10.019 5.232 -12.161 16.602 Atomic orbital electron populations 1.21648 0.94220 1.01110 1.02200 1.21889 0.96810 0.97447 0.99979 1.19613 0.91474 0.92129 0.89306 0.94977 1.21883 0.92847 1.37273 1.05564 0.94641 1.25808 0.95685 0.96198 1.00447 1.70064 1.10886 1.47119 1.30792 0.85876 0.79678 0.79581 0.77443 1.19401 1.23111 1.16810 1.62382 1.57272 1.01786 1.02408 1.21898 0.95736 0.98660 0.90197 1.22010 1.02533 0.95099 0.96390 1.22125 0.96226 0.92620 0.85234 1.87933 1.42311 1.79731 1.19194 1.24319 0.93485 0.97494 0.85860 1.24303 1.02643 0.97447 0.89704 1.66805 1.35557 1.14615 1.09934 1.24035 0.96036 0.99088 0.92559 1.21549 1.01845 0.98902 0.91261 1.21864 0.97213 0.89362 0.97952 0.92470 0.91186 0.93649 0.94823 0.92348 0.92728 0.97341 0.90762 0.90142 0.91078 0.93550 0.89415 0.89975 0.89361 0.85059 0.88306 0.89763 0.90084 0.90408 0.90989 0.97075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.37 9.80 71.98 0.71 -3.67 16 2 C -0.12 -5.03 4.72 30.60 0.14 -4.89 16 3 C 0.18 8.24 1.34 44.17 0.06 8.30 16 4 H 0.03 1.51 7.14 -2.39 -0.02 1.49 16 5 C -0.54 -29.54 7.77 25.60 0.20 -29.34 16 6 H 0.04 2.19 6.08 -2.91 -0.02 2.17 16 7 C 0.02 0.94 5.45 84.66 0.46 1.40 16 8 N -0.95 -58.85 13.96 21.45 0.30 -58.55 16 9 Si 0.95 44.61 24.41 68.60 1.67 46.28 16 10 H -0.27 -12.08 6.83 99.48 0.68 -11.40 16 11 H -0.30 -14.39 7.11 99.48 0.71 -13.69 16 12 H -0.24 -10.65 6.53 99.48 0.65 -10.00 16 13 N -0.52 -19.91 4.10 -875.51 -3.59 -23.50 16 14 C 0.06 2.34 4.80 86.32 0.41 2.76 16 15 C -0.12 -3.56 5.72 30.64 0.18 -3.39 16 16 C 0.10 2.73 2.55 30.67 0.08 2.81 16 17 O -0.37 -9.58 10.02 -148.98 -1.49 -11.08 16 18 C 0.05 1.03 4.33 31.24 0.14 1.17 16 19 C -0.01 -0.20 8.73 86.41 0.75 0.55 16 20 N -0.64 -11.55 8.53 -527.95 -4.50 -16.06 16 21 C 0.01 0.23 8.73 86.41 0.75 0.98 16 22 C -0.10 -2.84 5.75 30.65 0.18 -2.67 16 23 C 0.06 2.38 5.12 86.33 0.44 2.82 16 24 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 25 H 0.07 2.17 7.75 -2.39 -0.02 2.15 16 26 H 0.04 1.45 8.14 -2.38 -0.02 1.43 16 27 H 0.03 1.46 3.21 -2.39 -0.01 1.45 16 28 H 0.06 2.37 6.05 -2.39 -0.01 2.35 16 29 H 0.26 15.45 8.31 -92.71 -0.77 14.68 16 30 H 0.01 0.36 6.62 -2.38 -0.02 0.35 16 31 H 0.07 2.71 5.93 -2.39 -0.01 2.70 16 32 H 0.08 2.26 8.14 -2.38 -0.02 2.24 16 33 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 34 H 0.05 1.43 7.72 -2.39 -0.02 1.41 16 35 H 0.09 2.05 7.76 -2.39 -0.02 2.03 16 36 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 37 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 38 H 0.34 4.65 8.91 -89.69 -0.80 3.85 16 39 H 0.10 1.63 8.14 -2.38 -0.02 1.61 16 40 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 41 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 42 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 43 H 0.07 2.59 8.08 -2.38 -0.02 2.57 16 44 H 0.01 0.47 6.96 -2.39 -0.02 0.46 16 Total: -1.00 -63.03 328.26 -3.02 -66.04 By element: Atomic # 1 Polarization: 19.93 SS G_CDS: 0.09 Total: 20.02 kcal Atomic # 6 Polarization: -27.66 SS G_CDS: 4.50 Total: -23.16 kcal Atomic # 7 Polarization: -90.31 SS G_CDS: -7.79 Total: -98.11 kcal Atomic # 8 Polarization: -9.58 SS G_CDS: -1.49 Total: -11.08 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 1.67 Total: 46.28 kcal Total: -63.03 -3.02 -66.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724459189.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.486 kcal (2) G-P(sol) polarization free energy of solvation -63.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds