Wall clock time and date at job start Mon Mar 30 2020 05:28:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47013 * 2 1 4 4 H 1.08999 * 109.72132 * 56.10368 * 3 2 1 5 5 C 1.53975 * 109.69944 * 295.53093 * 3 2 1 6 6 C 1.45876 * 112.67253 * 158.88658 * 5 3 2 7 7 C 1.54522 * 111.66943 * 61.49688 * 6 5 3 8 8 C 1.50537 * 108.85985 * 282.77235 * 7 6 5 9 9 C 1.53917 * 112.94238 * 91.75234 * 8 7 6 10 10 N 1.44301 * 109.69669 * 176.66986 * 3 2 1 11 11 C 1.46898 * 111.00150 * 341.05786 * 10 3 2 12 12 C 1.50696 * 109.47044 * 292.69787 * 11 10 3 13 13 O 1.21282 * 120.00077 * 6.30320 * 12 11 10 14 14 N 1.34780 * 120.00026 * 186.30588 * 12 11 10 15 15 C 1.46500 * 119.99807 * 179.97438 * 14 12 11 16 16 C 1.50704 * 109.47073 * 180.02562 * 15 14 12 17 17 H 1.08004 * 119.99679 * 0.02562 * 16 15 14 18 18 C 1.37875 * 120.00249 * 180.02562 * 16 15 14 19 19 N 1.31520 * 119.99927 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00066 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47219 * 89.99962 * 20 18 16 22 22 H 1.48496 * 109.47076 * 209.99822 * 20 18 16 23 23 H 1.48499 * 109.47272 * 329.99753 * 20 18 16 24 24 H 1.08999 * 109.47064 * 175.37779 * 1 2 3 25 25 H 1.08994 * 109.47325 * 295.37568 * 1 2 3 26 26 H 1.09008 * 109.47135 * 55.38255 * 1 2 3 27 27 H 1.09001 * 109.47211 * 240.00668 * 2 1 3 28 28 H 1.09000 * 109.47197 * 120.00320 * 2 1 3 29 29 H 1.09007 * 108.84175 * 38.06037 * 5 3 2 30 30 H 1.09003 * 108.76082 * 279.65402 * 5 3 2 31 31 H 1.08993 * 109.04042 * 300.92840 * 6 5 3 32 32 H 1.09002 * 108.98061 * 182.01866 * 6 5 3 33 33 H 1.09001 * 109.57198 * 42.58404 * 7 6 5 34 34 H 1.08996 * 109.57171 * 162.95920 * 7 6 5 35 35 H 1.08998 * 108.78821 * 212.64420 * 8 7 6 36 36 H 1.08998 * 108.78903 * 330.85660 * 8 7 6 37 37 H 1.08996 * 108.70697 * 196.75602 * 9 8 7 38 38 H 1.08991 * 108.61278 * 78.67581 * 9 8 7 39 39 H 1.09004 * 109.46962 * 52.69496 * 11 10 3 40 40 H 1.08999 * 109.47578 * 172.69286 * 11 10 3 41 41 H 0.96993 * 120.00158 * 0.02562 * 14 12 11 42 42 H 1.09006 * 109.47373 * 299.99824 * 15 14 12 43 43 H 1.08993 * 109.47361 * 60.00311 * 15 14 12 44 44 H 0.96993 * 119.99648 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6230 1.9801 0.8517 5 6 1.6239 2.1401 -1.3081 6 6 1.6255 3.5945 -1.1949 7 6 3.0336 4.1397 -0.8666 8 6 3.3149 3.9123 0.5947 9 6 4.0268 2.5752 0.8676 10 7 3.4808 1.4490 0.0789 11 6 3.9865 0.1631 0.5775 12 6 3.5762 -0.0140 2.0167 13 8 2.8320 0.7891 2.5384 14 7 4.0363 -1.0649 2.7242 15 6 3.6378 -1.2368 4.1234 16 6 4.2848 -2.4784 4.6811 17 1 4.9288 -3.0791 4.0558 18 6 4.0546 -2.8475 5.9894 19 7 3.2708 -2.1157 6.7510 20 14 4.8572 -4.3860 6.6809 21 1 6.1733 -4.0347 7.2723 22 1 3.9838 -4.9714 7.7295 23 1 5.0526 -5.3751 5.5906 24 1 -0.3633 -1.0243 -0.0828 25 1 -0.3633 0.4404 0.9284 26 1 -0.3634 0.5839 -0.8458 27 1 1.8933 -0.5137 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 0.6215 1.8093 -1.5801 30 1 2.3168 1.8477 -2.0971 31 1 0.9363 3.8903 -0.4041 32 1 1.2890 4.0239 -2.1385 33 1 3.7771 3.6160 -1.4674 34 1 3.0717 5.2071 -1.0840 35 1 3.9414 4.7250 0.9622 36 1 2.3713 3.9254 1.1401 37 1 3.9317 2.3385 1.9273 38 1 5.0842 2.6891 0.6291 39 1 3.5710 -0.6475 -0.0212 40 1 5.0740 0.1476 0.5052 41 1 4.6318 -1.7070 2.3071 42 1 3.9578 -0.3698 4.7015 43 1 2.5538 -1.3335 4.1833 44 1 3.1087 -2.3756 7.6713 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000739926723.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:28:19 Heat of formation + Delta-G solvation = -41.575491 kcal Electronic energy + Delta-G solvation = -21908.707993 eV Core-core repulsion = 18860.608649 eV Total energy + Delta-G solvation = -3048.099345 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.40653 -38.00055 -34.81925 -34.19992 -33.64428 -32.36035 -30.46477 -28.64816 -26.74998 -25.52938 -24.35469 -22.42857 -21.78259 -20.26679 -19.94564 -18.99250 -17.07288 -16.27209 -15.85953 -15.66926 -15.09392 -14.91863 -14.41340 -14.22953 -13.93729 -13.46730 -13.38160 -13.24571 -12.80345 -12.60272 -12.03604 -11.98011 -11.84963 -11.68396 -11.31170 -11.10905 -11.03076 -10.94227 -10.78754 -10.53870 -10.50628 -10.38227 -10.32558 -10.19054 -10.04746 -9.52008 -9.41696 -8.75036 -7.91671 -7.70758 -6.18789 -4.25920 3.22492 3.28783 3.30797 3.31153 4.04560 4.12763 4.37334 4.79365 4.87146 4.98293 5.14847 5.17352 5.28265 5.33758 5.41316 5.48600 5.56973 5.58635 5.65071 5.73505 5.84248 5.89183 5.91405 5.94072 6.09173 6.16472 6.17164 6.24232 6.30508 6.36035 6.39495 6.47703 6.51145 6.65900 7.18525 7.29813 7.42582 7.46835 7.49225 7.64695 7.94898 8.59999 8.75235 9.06963 9.41002 10.91331 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.032025 B = 0.004244 C = 0.004040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.120612 B = 6596.524845 C = 6928.790100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.133 4.133 3 C 0.098 3.902 4 H 0.064 0.936 5 C -0.113 4.113 6 C -0.114 4.114 7 C -0.111 4.111 8 C -0.116 4.116 9 C 0.047 3.953 10 N -0.517 5.517 11 C 0.027 3.973 12 C 0.467 3.533 13 O -0.553 6.553 14 N -0.712 5.712 15 C 0.250 3.750 16 C -0.544 4.544 17 H 0.063 0.937 18 C 0.064 3.936 19 N -0.886 5.886 20 Si 0.903 3.097 21 H -0.279 1.279 22 H -0.284 1.284 23 H -0.272 1.272 24 H 0.051 0.949 25 H 0.054 0.946 26 H 0.055 0.945 27 H 0.062 0.938 28 H 0.072 0.928 29 H 0.060 0.940 30 H 0.065 0.935 31 H 0.054 0.946 32 H 0.053 0.947 33 H 0.071 0.929 34 H 0.053 0.947 35 H 0.061 0.939 36 H 0.059 0.941 37 H 0.065 0.935 38 H 0.061 0.939 39 H 0.106 0.894 40 H 0.093 0.907 41 H 0.390 0.610 42 H 0.024 0.976 43 H 0.025 0.975 44 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.820 7.606 -16.457 18.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.171 4.171 3 C -0.011 4.011 4 H 0.082 0.918 5 C -0.151 4.151 6 C -0.152 4.152 7 C -0.148 4.148 8 C -0.154 4.154 9 C -0.080 4.080 10 N -0.240 5.240 11 C -0.105 4.105 12 C 0.251 3.749 13 O -0.434 6.434 14 N -0.361 5.361 15 C 0.129 3.871 16 C -0.582 4.582 17 H 0.081 0.919 18 C -0.140 4.140 19 N -0.523 5.523 20 Si 0.730 3.270 21 H -0.204 1.204 22 H -0.210 1.210 23 H -0.197 1.197 24 H 0.071 0.929 25 H 0.073 0.927 26 H 0.074 0.926 27 H 0.081 0.919 28 H 0.091 0.909 29 H 0.079 0.921 30 H 0.084 0.916 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.090 0.910 34 H 0.072 0.928 35 H 0.080 0.920 36 H 0.078 0.922 37 H 0.083 0.917 38 H 0.080 0.920 39 H 0.124 0.876 40 H 0.111 0.889 41 H 0.223 0.777 42 H 0.042 0.958 43 H 0.043 0.957 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -1.279 8.267 -16.323 18.342 hybrid contribution 0.431 -1.285 1.245 1.841 sum -0.848 6.981 -15.078 16.638 Atomic orbital electron populations 1.21796 0.95778 1.01341 1.01766 1.22022 0.96344 0.96745 1.01985 1.21252 0.87075 0.95706 0.97086 0.91759 1.20619 1.00979 0.95233 0.98281 1.20559 0.97133 0.96561 1.00905 1.21313 0.97299 0.99583 0.96618 1.21318 1.00912 0.96330 0.96847 1.22546 0.97748 0.89582 0.98121 1.61284 1.09782 1.01285 1.51657 1.22462 1.01734 0.94257 0.92058 1.21676 0.81475 0.82193 0.89512 1.90637 1.37052 1.43529 1.72139 1.46609 1.48439 1.25684 1.15335 1.19066 0.96027 0.96778 0.75221 1.21236 1.30334 1.09397 0.97224 0.91916 1.24955 0.95018 0.97321 0.96697 1.69976 1.36099 1.38405 1.07856 0.86420 0.79167 0.82526 0.78844 1.20449 1.20995 1.19713 0.92943 0.92657 0.92641 0.91926 0.90945 0.92108 0.91610 0.92721 0.92785 0.91048 0.92849 0.92025 0.92236 0.91716 0.92039 0.87605 0.88896 0.77732 0.95763 0.95709 0.92461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 9.79 37.16 0.36 -1.56 16 2 C -0.13 -1.87 3.90 -26.73 -0.10 -1.98 16 3 C 0.10 1.38 1.06 -68.59 -0.07 1.31 16 4 H 0.06 1.10 6.08 -51.93 -0.32 0.79 16 5 C -0.11 -1.32 4.76 -29.59 -0.14 -1.46 16 6 C -0.11 -1.24 5.35 -29.30 -0.16 -1.40 16 7 C -0.11 -1.21 5.63 -27.16 -0.15 -1.36 16 8 C -0.12 -1.47 5.27 -27.48 -0.14 -1.62 16 9 C 0.05 0.69 5.09 -2.77 -0.01 0.67 16 10 N -0.52 -7.31 4.17 -227.99 -0.95 -8.26 16 11 C 0.03 0.38 5.36 -4.98 -0.03 0.35 16 12 C 0.47 8.91 5.19 -10.99 -0.06 8.85 16 13 O -0.55 -12.47 12.24 5.56 0.07 -12.40 16 14 N -0.71 -14.66 5.55 -61.47 -0.34 -15.00 16 15 C 0.25 6.58 5.43 -5.19 -0.03 6.55 16 16 C -0.54 -14.70 9.28 -34.44 -0.32 -15.02 16 17 H 0.06 1.59 7.60 -52.48 -0.40 1.19 16 18 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 19 N -0.89 -26.12 13.29 55.43 0.74 -25.39 16 20 Si 0.90 20.82 29.54 -169.99 -5.02 15.79 16 21 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 22 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 23 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 24 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 26 H 0.05 0.61 6.06 -51.92 -0.31 0.30 16 27 H 0.06 0.78 7.46 -51.93 -0.39 0.39 16 28 H 0.07 1.22 4.59 -51.93 -0.24 0.98 16 29 H 0.06 0.66 5.81 -51.93 -0.30 0.36 16 30 H 0.07 0.77 8.08 -51.93 -0.42 0.35 16 31 H 0.05 0.62 7.59 -51.93 -0.39 0.23 16 32 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.07 0.81 7.78 -51.93 -0.40 0.41 16 34 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.06 0.83 6.66 -51.93 -0.35 0.49 16 37 H 0.06 1.17 5.39 -51.93 -0.28 0.89 16 38 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.11 1.35 5.84 -51.93 -0.30 1.04 16 40 H 0.09 1.17 8.14 -51.93 -0.42 0.74 16 41 H 0.39 6.91 8.32 -40.82 -0.34 6.57 16 42 H 0.02 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.02 0.73 8.14 -51.93 -0.42 0.30 16 44 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 326.52 15.07 4.92 4.92 Total: -1.00 -30.39 326.52 -8.92 -39.31 By element: Atomic # 1 Polarization: 13.38 SS G_CDS: -7.38 Total: 6.00 kcal Atomic # 6 Polarization: -4.03 SS G_CDS: -0.95 Total: -4.98 kcal Atomic # 7 Polarization: -48.09 SS G_CDS: -0.56 Total: -48.64 kcal Atomic # 8 Polarization: -12.47 SS G_CDS: 0.07 Total: -12.40 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -30.39 -8.92 -39.31 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739926723.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.266 kcal (2) G-P(sol) polarization free energy of solvation -30.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds