Wall clock time and date at job start Mon Mar 30 2020 05:28:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47013 * 2 1 4 4 H 1.08999 * 109.72132 * 56.10368 * 3 2 1 5 5 C 1.53975 * 109.69944 * 295.53093 * 3 2 1 6 6 C 1.45876 * 112.67253 * 158.88658 * 5 3 2 7 7 C 1.54522 * 111.66943 * 61.49688 * 6 5 3 8 8 C 1.50537 * 108.85985 * 282.77235 * 7 6 5 9 9 C 1.53917 * 112.94238 * 91.75234 * 8 7 6 10 10 N 1.44301 * 109.69669 * 176.66986 * 3 2 1 11 11 C 1.46898 * 111.00150 * 341.05786 * 10 3 2 12 12 C 1.50696 * 109.47044 * 292.69787 * 11 10 3 13 13 O 1.21282 * 120.00077 * 6.30320 * 12 11 10 14 14 N 1.34780 * 120.00026 * 186.30588 * 12 11 10 15 15 C 1.46500 * 119.99807 * 179.97438 * 14 12 11 16 16 C 1.50704 * 109.47073 * 180.02562 * 15 14 12 17 17 H 1.08004 * 119.99679 * 0.02562 * 16 15 14 18 18 C 1.37875 * 120.00249 * 180.02562 * 16 15 14 19 19 N 1.31520 * 119.99927 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00066 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47219 * 89.99962 * 20 18 16 22 22 H 1.48496 * 109.47076 * 209.99822 * 20 18 16 23 23 H 1.48499 * 109.47272 * 329.99753 * 20 18 16 24 24 H 1.08999 * 109.47064 * 175.37779 * 1 2 3 25 25 H 1.08994 * 109.47325 * 295.37568 * 1 2 3 26 26 H 1.09008 * 109.47135 * 55.38255 * 1 2 3 27 27 H 1.09001 * 109.47211 * 240.00668 * 2 1 3 28 28 H 1.09000 * 109.47197 * 120.00320 * 2 1 3 29 29 H 1.09007 * 108.84175 * 38.06037 * 5 3 2 30 30 H 1.09003 * 108.76082 * 279.65402 * 5 3 2 31 31 H 1.08993 * 109.04042 * 300.92840 * 6 5 3 32 32 H 1.09002 * 108.98061 * 182.01866 * 6 5 3 33 33 H 1.09001 * 109.57198 * 42.58404 * 7 6 5 34 34 H 1.08996 * 109.57171 * 162.95920 * 7 6 5 35 35 H 1.08998 * 108.78821 * 212.64420 * 8 7 6 36 36 H 1.08998 * 108.78903 * 330.85660 * 8 7 6 37 37 H 1.08996 * 108.70697 * 196.75602 * 9 8 7 38 38 H 1.08991 * 108.61278 * 78.67581 * 9 8 7 39 39 H 1.09004 * 109.46962 * 52.69496 * 11 10 3 40 40 H 1.08999 * 109.47578 * 172.69286 * 11 10 3 41 41 H 0.96993 * 120.00158 * 0.02562 * 14 12 11 42 42 H 1.09006 * 109.47373 * 299.99824 * 15 14 12 43 43 H 1.08993 * 109.47361 * 60.00311 * 15 14 12 44 44 H 0.96993 * 119.99648 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6230 1.9801 0.8517 5 6 1.6239 2.1401 -1.3081 6 6 1.6255 3.5945 -1.1949 7 6 3.0336 4.1397 -0.8666 8 6 3.3149 3.9123 0.5947 9 6 4.0268 2.5752 0.8676 10 7 3.4808 1.4490 0.0789 11 6 3.9865 0.1631 0.5775 12 6 3.5762 -0.0140 2.0167 13 8 2.8320 0.7891 2.5384 14 7 4.0363 -1.0649 2.7242 15 6 3.6378 -1.2368 4.1234 16 6 4.2848 -2.4784 4.6811 17 1 4.9288 -3.0791 4.0558 18 6 4.0546 -2.8475 5.9894 19 7 3.2708 -2.1157 6.7510 20 14 4.8572 -4.3860 6.6809 21 1 6.1733 -4.0347 7.2723 22 1 3.9838 -4.9714 7.7295 23 1 5.0526 -5.3751 5.5906 24 1 -0.3633 -1.0243 -0.0828 25 1 -0.3633 0.4404 0.9284 26 1 -0.3634 0.5839 -0.8458 27 1 1.8933 -0.5137 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 0.6215 1.8093 -1.5801 30 1 2.3168 1.8477 -2.0971 31 1 0.9363 3.8903 -0.4041 32 1 1.2890 4.0239 -2.1385 33 1 3.7771 3.6160 -1.4674 34 1 3.0717 5.2071 -1.0840 35 1 3.9414 4.7250 0.9622 36 1 2.3713 3.9254 1.1401 37 1 3.9317 2.3385 1.9273 38 1 5.0842 2.6891 0.6291 39 1 3.5710 -0.6475 -0.0212 40 1 5.0740 0.1476 0.5052 41 1 4.6318 -1.7070 2.3071 42 1 3.9578 -0.3698 4.7015 43 1 2.5538 -1.3335 4.1833 44 1 3.1087 -2.3756 7.6713 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000739926723.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:28:19 Heat of formation + Delta-G solvation = -62.790848 kcal Electronic energy + Delta-G solvation = -21909.627960 eV Core-core repulsion = 18860.608649 eV Total energy + Delta-G solvation = -3049.019312 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.73483 -39.39028 -36.27200 -35.68001 -34.83224 -34.36915 -31.52313 -30.23381 -28.40956 -26.60805 -25.67965 -24.28063 -22.86609 -21.58810 -21.22197 -20.31289 -18.82655 -17.57990 -17.50120 -17.02071 -16.67735 -16.35424 -15.91899 -15.56563 -15.24689 -14.68162 -14.50955 -14.34813 -14.27233 -14.09334 -13.86765 -13.63702 -12.94859 -12.89947 -12.77807 -12.73123 -12.38675 -12.27328 -12.25298 -12.01696 -11.59135 -11.52282 -11.51560 -11.41695 -11.22926 -11.11785 -10.96364 -10.81771 -9.81015 -9.05125 -8.31603 -6.48866 1.41023 1.43409 1.54782 1.75730 2.31221 2.62955 2.89798 3.03073 3.78210 3.84740 3.95550 4.05669 4.12793 4.22907 4.28434 4.36102 4.43781 4.54645 4.58464 4.65696 4.79929 4.81341 4.91703 4.92820 5.01911 5.06428 5.11150 5.15901 5.20470 5.22206 5.26066 5.37782 5.39480 5.46630 5.50093 5.54287 5.64342 5.69166 5.83035 6.03134 6.29230 6.62965 6.91524 7.21278 7.50288 8.80331 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.032025 B = 0.004244 C = 0.004040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.120612 B = 6596.524845 C = 6928.790100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.132 4.132 3 C 0.097 3.903 4 H 0.024 0.976 5 C -0.105 4.105 6 C -0.116 4.116 7 C -0.104 4.104 8 C -0.113 4.113 9 C 0.047 3.953 10 N -0.504 5.504 11 C 0.036 3.964 12 C 0.467 3.533 13 O -0.592 6.592 14 N -0.710 5.710 15 C 0.270 3.730 16 C -0.556 4.556 17 H 0.084 0.916 18 C 0.003 3.997 19 N -0.933 5.933 20 Si 0.985 3.015 21 H -0.270 1.270 22 H -0.284 1.284 23 H -0.254 1.254 24 H 0.060 0.940 25 H 0.028 0.972 26 H 0.079 0.921 27 H 0.089 0.911 28 H 0.038 0.962 29 H 0.072 0.928 30 H 0.076 0.924 31 H 0.041 0.959 32 H 0.077 0.923 33 H 0.074 0.926 34 H 0.071 0.929 35 H 0.073 0.927 36 H 0.036 0.964 37 H 0.022 0.978 38 H 0.079 0.921 39 H 0.131 0.869 40 H 0.121 0.879 41 H 0.407 0.593 42 H -0.019 1.019 43 H -0.018 1.018 44 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.539 6.670 -19.332 20.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.170 4.170 3 C -0.011 4.011 4 H 0.043 0.957 5 C -0.143 4.143 6 C -0.153 4.153 7 C -0.142 4.142 8 C -0.151 4.151 9 C -0.080 4.080 10 N -0.226 5.226 11 C -0.095 4.095 12 C 0.254 3.746 13 O -0.474 6.474 14 N -0.360 5.360 15 C 0.147 3.853 16 C -0.594 4.594 17 H 0.102 0.898 18 C -0.196 4.196 19 N -0.571 5.571 20 Si 0.808 3.192 21 H -0.196 1.196 22 H -0.210 1.210 23 H -0.178 1.178 24 H 0.079 0.921 25 H 0.047 0.953 26 H 0.098 0.902 27 H 0.108 0.892 28 H 0.057 0.943 29 H 0.090 0.910 30 H 0.095 0.905 31 H 0.060 0.940 32 H 0.096 0.904 33 H 0.093 0.907 34 H 0.090 0.910 35 H 0.091 0.909 36 H 0.054 0.946 37 H 0.040 0.960 38 H 0.097 0.903 39 H 0.149 0.851 40 H 0.139 0.861 41 H 0.243 0.757 42 H -0.001 1.001 43 H 0.000 1.000 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 0.098 7.334 -19.253 20.603 hybrid contribution -0.045 -0.903 2.145 2.328 sum 0.053 6.430 -17.108 18.277 Atomic orbital electron populations 1.21781 0.95107 1.02105 1.01422 1.22007 0.97075 0.96497 1.01428 1.21275 0.86900 0.95712 0.97262 0.95735 1.20560 1.01760 0.95445 0.96510 1.20581 0.96926 0.96204 1.01631 1.21284 0.97333 1.00853 0.94720 1.21308 0.99767 0.95632 0.98382 1.22547 0.99116 0.90712 0.95643 1.61472 1.09750 1.00991 1.50369 1.22626 1.03517 0.95260 0.88093 1.22712 0.80043 0.80613 0.91270 1.90636 1.38602 1.44724 1.73459 1.46362 1.49308 1.27052 1.13294 1.18437 0.93380 0.95332 0.78136 1.21640 1.30410 1.09472 0.97862 0.89791 1.26084 0.95374 1.01044 0.97107 1.70146 1.37858 1.40755 1.08366 0.85157 0.77933 0.77926 0.78225 1.19579 1.20972 1.17767 0.92090 0.95258 0.90245 0.89238 0.94334 0.90997 0.90497 0.94011 0.90441 0.90683 0.91029 0.90868 0.94564 0.96013 0.90306 0.85103 0.86092 0.75715 1.00098 0.99991 0.92298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.71 9.79 71.98 0.70 -3.00 16 2 C -0.13 -3.61 3.90 30.59 0.12 -3.49 16 3 C 0.10 2.71 1.06 45.73 0.05 2.76 16 4 H 0.02 0.89 6.08 -2.39 -0.01 0.87 16 5 C -0.10 -2.19 4.76 28.74 0.14 -2.05 16 6 C -0.12 -2.27 5.35 28.93 0.15 -2.12 16 7 C -0.10 -2.05 5.63 30.31 0.17 -1.88 16 8 C -0.11 -2.84 5.27 30.11 0.16 -2.68 16 9 C 0.05 1.37 5.09 86.41 0.44 1.81 16 10 N -0.50 -13.63 4.17 -875.23 -3.65 -17.28 16 11 C 0.04 0.99 5.36 85.56 0.46 1.45 16 12 C 0.47 18.35 5.19 87.66 0.46 18.81 16 13 O -0.59 -28.59 12.24 -3.04 -0.04 -28.63 16 14 N -0.71 -30.01 5.55 -466.78 -2.59 -32.60 16 15 C 0.27 15.05 5.43 85.63 0.46 15.51 16 16 C -0.56 -30.53 9.28 25.60 0.24 -30.29 16 17 H 0.08 4.15 7.60 -2.91 -0.02 4.13 16 18 C 0.00 0.19 5.46 84.65 0.46 0.65 16 19 N -0.93 -57.00 13.29 21.45 0.28 -56.71 16 20 Si 0.98 42.55 29.54 68.60 2.03 44.58 16 21 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 22 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16 23 H -0.25 -10.16 7.11 99.48 0.71 -9.45 16 24 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 25 H 0.03 0.86 8.14 -2.39 -0.02 0.85 16 26 H 0.08 1.60 6.06 -2.38 -0.01 1.59 16 27 H 0.09 1.95 7.46 -2.39 -0.02 1.94 16 28 H 0.04 1.32 4.59 -2.39 -0.01 1.30 16 29 H 0.07 1.35 5.81 -2.38 -0.01 1.33 16 30 H 0.08 1.49 8.08 -2.39 -0.02 1.47 16 31 H 0.04 0.93 7.59 -2.39 -0.02 0.91 16 32 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.07 1.46 7.78 -2.39 -0.02 1.44 16 34 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 36 H 0.04 1.06 6.66 -2.39 -0.02 1.05 16 37 H 0.02 0.83 5.39 -2.39 -0.01 0.81 16 38 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 39 H 0.13 2.97 5.84 -2.38 -0.01 2.95 16 40 H 0.12 2.68 8.14 -2.39 -0.02 2.66 16 41 H 0.41 14.18 8.32 -92.71 -0.77 13.41 16 42 H -0.02 -1.20 8.14 -2.38 -0.02 -1.22 16 43 H -0.02 -1.13 8.14 -2.39 -0.02 -1.15 16 44 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 Total: -1.00 -70.76 326.52 0.25 -70.50 By element: Atomic # 1 Polarization: 24.46 SS G_CDS: 0.21 Total: 24.67 kcal Atomic # 6 Polarization: -8.54 SS G_CDS: 4.01 Total: -4.53 kcal Atomic # 7 Polarization: -100.64 SS G_CDS: -5.96 Total: -106.59 kcal Atomic # 8 Polarization: -28.59 SS G_CDS: -0.04 Total: -28.63 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 2.03 Total: 44.58 kcal Total: -70.76 0.25 -70.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739926723.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.711 kcal (2) G-P(sol) polarization free energy of solvation -70.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds