Wall clock time and date at job start Mon Mar 30 2020 04:58:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42902 * 114.00332 * 2 1 4 4 C 1.50692 * 109.47328 * 179.97438 * 3 2 1 5 5 C 1.50699 * 120.00230 * 179.97438 * 4 3 2 6 6 C 1.31001 * 119.99923 * 359.97438 * 4 3 2 7 7 C 1.50707 * 119.99921 * 173.74754 * 6 4 3 8 8 N 1.46897 * 109.47352 * 236.16022 * 7 6 4 9 9 C 1.46958 * 110.99835 * 293.79952 * 8 7 6 10 10 C 1.53052 * 109.36099 * 176.81220 * 9 8 7 11 11 N 1.46952 * 109.36415 * 58.40436 * 10 9 8 12 12 C 1.46904 * 111.00112 * 176.80895 * 11 10 9 13 13 C 1.50701 * 109.46969 * 293.80182 * 12 11 10 14 14 H 1.08002 * 120.00210 * 359.97438 * 13 12 11 15 15 C 1.37874 * 119.99882 * 180.02562 * 13 12 11 16 16 N 1.31516 * 120.00049 * 179.97438 * 15 13 12 17 17 Si 1.86800 * 120.00093 * 359.97438 * 15 13 12 18 18 H 1.48497 * 109.47466 * 90.00448 * 17 15 13 19 19 H 1.48503 * 109.47063 * 210.00388 * 17 15 13 20 20 H 1.48502 * 109.46920 * 329.99760 * 17 15 13 21 21 C 1.46957 * 110.88017 * 300.67864 * 11 10 9 22 22 C 1.46952 * 110.99842 * 170.00308 * 8 7 6 23 23 H 1.09011 * 109.46974 * 60.00260 * 1 2 3 24 24 H 1.09002 * 109.47483 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47355 * 300.00568 * 1 2 3 26 26 H 1.09005 * 109.46833 * 59.99154 * 3 2 1 27 27 H 1.09006 * 109.46462 * 299.99651 * 3 2 1 28 28 H 1.09003 * 109.46803 * 265.05655 * 5 4 3 29 29 H 1.09001 * 109.47114 * 25.05185 * 5 4 3 30 30 H 1.08990 * 109.47599 * 145.05327 * 5 4 3 31 31 H 1.08001 * 120.00156 * 353.75876 * 6 4 3 32 32 H 1.08999 * 109.46663 * 356.16265 * 7 6 4 33 33 H 1.08998 * 109.46503 * 116.15800 * 7 6 4 34 34 H 1.08998 * 109.48862 * 296.78207 * 9 8 7 35 35 H 1.08996 * 109.49034 * 56.84653 * 9 8 7 36 36 H 1.08993 * 109.49098 * 298.43593 * 10 9 8 37 37 H 1.09010 * 109.48536 * 178.36938 * 10 9 8 38 38 H 1.09001 * 109.47000 * 53.79421 * 12 11 10 39 39 H 1.08999 * 109.47272 * 173.79899 * 12 11 10 40 40 H 0.97002 * 119.99910 * 179.97438 * 16 15 13 41 41 H 1.08998 * 109.48506 * 299.35172 * 21 11 10 42 42 H 1.09005 * 109.48837 * 179.28982 * 21 11 10 43 43 H 1.08999 * 109.48875 * 303.15757 * 22 8 7 44 44 H 1.09006 * 109.49188 * 63.22034 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5125 1.1864 0.0006 5 6 4.3668 2.4279 0.0002 6 6 4.0758 0.0037 0.0016 7 6 5.5712 -0.1187 -0.1399 8 7 5.8856 -0.9809 -1.2869 9 6 5.4464 -2.3621 -1.0436 10 6 5.7192 -3.2082 -2.2894 11 7 7.1537 -3.1627 -2.6048 12 6 7.4682 -4.0249 -3.7519 13 6 7.2324 -5.4654 -3.3770 14 1 6.8842 -5.7154 -2.3857 15 6 7.4622 -6.4642 -4.2992 16 7 7.2569 -7.7214 -3.9720 17 14 8.0651 -6.0319 -6.0136 18 1 9.5500 -6.0192 -6.0276 19 1 7.5697 -7.0427 -6.9821 20 1 7.5549 -4.6902 -6.3940 21 6 7.5930 -1.7816 -2.8481 22 6 7.3202 -0.9354 -1.6024 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 1.6885 1.8464 0.8900 27 1 1.6887 1.8463 -0.8901 28 1 4.6460 2.6763 -1.0238 29 1 3.8056 3.2552 0.4346 30 1 5.2664 2.2502 0.5892 31 1 3.4686 -0.8836 0.1036 32 1 6.0032 0.8693 -0.2988 33 1 5.9874 -0.5555 0.7679 34 1 5.9950 -2.7742 -0.1967 35 1 4.3787 -2.3709 -0.8246 36 1 5.1493 -2.8123 -3.1299 37 1 5.4208 -4.2396 -2.1009 38 1 6.8277 -3.7589 -4.5928 39 1 8.5125 -3.8890 -4.0332 40 1 7.4182 -8.4240 -4.6210 41 1 7.0443 -1.3694 -3.6950 42 1 8.6608 -1.7728 -3.0671 43 1 7.6185 0.0959 -1.7907 44 1 7.8901 -1.3314 -0.7618 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930117002.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:58:27 Heat of formation + Delta-G solvation = -13.885809 kcal Electronic energy + Delta-G solvation = -20806.687361 eV Core-core repulsion = 17759.788731 eV Total energy + Delta-G solvation = -3046.898630 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.02862 -38.29807 -36.17643 -34.36477 -32.34956 -30.47035 -29.51144 -28.08949 -27.51323 -25.82117 -24.96949 -23.17580 -22.55756 -20.97446 -19.17240 -17.96600 -16.78000 -16.45351 -16.30906 -16.11328 -15.53725 -14.62492 -14.38530 -14.28236 -14.24734 -13.74948 -13.58424 -13.33547 -13.27876 -12.78085 -12.58119 -12.35334 -12.04559 -11.89362 -11.76227 -11.44161 -11.18060 -11.03971 -10.86489 -10.70363 -10.46674 -10.25474 -10.05412 -9.97065 -9.77342 -9.22010 -8.81608 -8.53226 -8.02869 -7.29952 -6.01802 -3.98833 2.09396 3.31385 3.38603 3.41639 3.52504 4.26910 4.45509 4.66477 4.84311 4.95878 5.04610 5.07339 5.13088 5.22269 5.25123 5.30649 5.32625 5.42190 5.47162 5.51027 5.58229 5.62597 5.71183 5.78113 5.85115 5.95342 5.95689 6.08467 6.19266 6.37751 6.57738 6.61823 6.70643 6.74214 6.89803 7.02932 7.07980 7.30511 7.35556 7.64409 7.97111 8.11339 8.70398 9.06514 9.60247 11.11334 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.024731 B = 0.003756 C = 0.003441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.923209 B = 7453.930862 C = 8134.318605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.386 6.386 3 C 0.104 3.896 4 C -0.153 4.153 5 C -0.110 4.110 6 C -0.115 4.115 7 C 0.076 3.924 8 N -0.534 5.534 9 C 0.057 3.943 10 C 0.067 3.933 11 N -0.530 5.530 12 C 0.162 3.838 13 C -0.508 4.508 14 H 0.080 0.920 15 C 0.068 3.932 16 N -0.901 5.901 17 Si 0.875 3.125 18 H -0.276 1.276 19 H -0.286 1.286 20 H -0.268 1.268 21 C 0.054 3.946 22 C 0.061 3.939 23 H 0.041 0.959 24 H 0.087 0.913 25 H 0.039 0.961 26 H 0.053 0.947 27 H 0.058 0.942 28 H 0.068 0.932 29 H 0.058 0.942 30 H 0.068 0.932 31 H 0.122 0.878 32 H 0.079 0.921 33 H 0.039 0.961 34 H 0.039 0.961 35 H 0.075 0.925 36 H 0.029 0.971 37 H 0.091 0.909 38 H -0.011 1.011 39 H 0.023 0.977 40 H 0.263 0.737 41 H 0.030 0.970 42 H 0.071 0.929 43 H 0.069 0.931 44 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.957 20.729 8.311 24.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.305 6.305 3 C 0.028 3.972 4 C -0.154 4.154 5 C -0.167 4.167 6 C -0.134 4.134 7 C -0.051 4.051 8 N -0.259 5.259 9 C -0.071 4.071 10 C -0.061 4.061 11 N -0.255 5.255 12 C 0.036 3.964 13 C -0.546 4.546 14 H 0.098 0.902 15 C -0.134 4.134 16 N -0.540 5.540 17 Si 0.702 3.298 18 H -0.202 1.202 19 H -0.212 1.212 20 H -0.193 1.193 21 C -0.075 4.075 22 C -0.067 4.067 23 H 0.059 0.941 24 H 0.106 0.894 25 H 0.058 0.942 26 H 0.071 0.929 27 H 0.076 0.924 28 H 0.086 0.914 29 H 0.077 0.923 30 H 0.087 0.913 31 H 0.139 0.861 32 H 0.098 0.902 33 H 0.057 0.943 34 H 0.057 0.943 35 H 0.093 0.907 36 H 0.047 0.953 37 H 0.109 0.891 38 H 0.007 0.993 39 H 0.041 0.959 40 H 0.073 0.927 41 H 0.049 0.951 42 H 0.090 0.910 43 H 0.088 0.912 44 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -8.819 20.365 8.229 23.669 hybrid contribution 0.076 0.279 -0.988 1.030 sum -8.743 20.644 7.241 23.559 Atomic orbital electron populations 1.22738 0.80944 1.02975 0.99754 1.87898 1.19609 1.27577 1.95399 1.21212 0.91334 0.84747 0.99934 1.21289 0.93410 0.95666 1.05065 1.20712 0.98748 0.94942 1.02312 1.22608 0.95523 0.97857 0.97363 1.21244 0.93511 0.97983 0.92339 1.62207 1.16759 1.09757 1.37135 1.22283 0.99882 0.86922 0.98039 1.22025 0.88789 1.00096 0.95189 1.62109 1.15920 1.06340 1.41104 1.20152 0.95324 0.93537 0.87383 1.21042 1.44601 0.88128 1.00863 0.90183 1.24898 0.95240 0.94890 0.98328 1.69899 1.49639 0.99255 1.35251 0.86859 0.79446 0.78492 0.84956 1.20189 1.21228 1.19258 1.22105 0.99930 0.89924 0.95516 1.22138 0.87546 0.99065 0.97928 0.94079 0.89438 0.94234 0.92892 0.92408 0.91352 0.92284 0.91329 0.86063 0.90244 0.94317 0.94289 0.90689 0.95308 0.89065 0.99334 0.95876 0.92712 0.95133 0.91042 0.91242 0.94231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 11.01 101.05 1.11 1.38 16 2 O -0.39 -4.47 9.11 -35.23 -0.32 -4.79 16 3 C 0.10 1.02 6.32 36.00 0.23 1.24 16 4 C -0.15 -1.65 6.05 -101.07 -0.61 -2.26 16 5 C -0.11 -0.92 8.94 36.01 0.32 -0.60 16 6 C -0.12 -1.45 8.52 -36.02 -0.31 -1.76 16 7 C 0.08 0.97 5.04 -4.97 -0.03 0.95 16 8 N -0.53 -8.26 4.70 -235.91 -1.11 -9.37 16 9 C 0.06 0.96 5.44 -3.77 -0.02 0.94 16 10 C 0.07 1.38 5.43 -3.77 -0.02 1.36 16 11 N -0.53 -11.62 4.70 -235.91 -1.11 -12.73 16 12 C 0.16 4.07 3.79 -4.97 -0.02 4.05 16 13 C -0.51 -14.71 9.03 -34.44 -0.31 -15.03 16 14 H 0.08 2.51 7.38 -52.49 -0.39 2.13 16 15 C 0.07 1.99 5.47 -17.82 -0.10 1.90 16 16 N -0.90 -27.93 13.96 55.43 0.77 -27.16 16 17 Si 0.88 21.87 27.47 -169.99 -4.67 17.20 16 18 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 19 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 20 H -0.27 -6.50 6.54 56.52 0.37 -6.13 16 21 C 0.05 0.98 5.61 -3.77 -0.02 0.96 16 22 C 0.06 0.94 5.61 -3.77 -0.02 0.91 16 23 H 0.04 0.29 8.14 -51.92 -0.42 -0.13 16 24 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 25 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 26 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.06 0.40 8.09 -51.93 -0.42 -0.02 16 30 H 0.07 0.54 6.65 -51.93 -0.35 0.20 16 31 H 0.12 1.70 5.74 -52.49 -0.30 1.40 16 32 H 0.08 0.89 5.59 -51.93 -0.29 0.60 16 33 H 0.04 0.49 8.12 -51.93 -0.42 0.07 16 34 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.07 1.19 6.55 -51.93 -0.34 0.85 16 36 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.09 2.04 6.79 -51.92 -0.35 1.69 16 38 H -0.01 -0.28 7.18 -51.93 -0.37 -0.66 16 39 H 0.02 0.58 7.45 -51.93 -0.39 0.19 16 40 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 41 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 42 H 0.07 1.22 8.07 -51.93 -0.42 0.80 16 43 H 0.07 0.89 8.07 -51.93 -0.42 0.47 16 44 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 342.34 15.07 5.16 5.16 Total: -1.00 -31.91 342.34 -8.92 -40.83 By element: Atomic # 1 Polarization: 4.66 SS G_CDS: -7.85 Total: -3.19 kcal Atomic # 6 Polarization: -6.17 SS G_CDS: 0.21 Total: -5.96 kcal Atomic # 7 Polarization: -47.81 SS G_CDS: -1.44 Total: -49.26 kcal Atomic # 8 Polarization: -4.47 SS G_CDS: -0.32 Total: -4.79 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -4.67 Total: 17.20 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -31.91 -8.92 -40.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930117002.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.946 kcal (2) G-P(sol) polarization free energy of solvation -31.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds