Wall clock time and date at job start Mon Mar 30 2020 06:20:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 115.55752 * 2 1 4 4 C 1.53002 * 117.50002 * 145.68907 * 2 1 3 5 5 C 1.53000 * 117.49864 * 214.31261 * 2 1 3 6 6 H 1.08997 * 117.51673 * 145.02811 * 5 2 1 7 7 C 1.52996 * 117.49892 * 359.97438 * 5 2 1 8 8 N 1.46906 * 109.47022 * 174.98714 * 7 5 2 9 9 C 1.46901 * 110.99793 * 293.95609 * 8 7 5 10 10 C 1.46898 * 110.99820 * 169.99926 * 8 7 5 11 11 C 1.53004 * 109.46619 * 189.99887 * 10 8 7 12 12 C 1.50701 * 109.46759 * 179.97438 * 11 10 8 13 13 O 1.21283 * 120.00303 * 0.02562 * 12 11 10 14 14 N 1.34779 * 119.99694 * 179.97438 * 12 11 10 15 15 C 1.46492 * 120.00282 * 0.02562 * 14 12 11 16 16 C 1.46507 * 119.99641 * 180.02562 * 14 12 11 17 17 C 1.50706 * 109.46607 * 90.00567 * 16 14 12 18 18 H 1.07991 * 120.00495 * 359.97438 * 17 16 14 19 19 C 1.37885 * 119.99447 * 180.02562 * 17 16 14 20 20 N 1.31514 * 120.00224 * 359.97438 * 19 17 16 21 21 Si 1.86793 * 119.99584 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47329 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.47226 * 119.99934 * 21 19 17 24 24 H 1.48506 * 109.47102 * 239.99572 * 21 19 17 25 25 H 1.09005 * 109.46822 * 205.68928 * 1 2 3 26 26 H 1.09001 * 109.47498 * 325.68766 * 1 2 3 27 27 H 1.09002 * 109.47400 * 85.69494 * 1 2 3 28 28 H 1.09002 * 117.49910 * 359.97438 * 4 2 1 29 29 H 1.08998 * 117.51241 * 214.97421 * 4 2 1 30 30 H 1.08997 * 109.47190 * 54.98888 * 7 5 2 31 31 H 1.09001 * 109.47349 * 294.98455 * 7 5 2 32 32 H 1.09002 * 109.47401 * 59.99808 * 9 8 7 33 33 H 1.09001 * 109.46874 * 299.99821 * 9 8 7 34 34 H 1.09004 * 109.46970 * 179.97438 * 9 8 7 35 35 H 1.08994 * 109.47410 * 309.99936 * 10 8 7 36 36 H 1.08999 * 109.47216 * 70.00266 * 10 8 7 37 37 H 1.08994 * 109.47270 * 300.00135 * 11 10 8 38 38 H 1.08999 * 109.47017 * 60.00257 * 11 10 8 39 39 H 1.09004 * 109.47334 * 89.99382 * 15 14 12 40 40 H 1.09003 * 109.47171 * 209.99933 * 15 14 12 41 41 H 1.09001 * 109.47239 * 329.99404 * 15 14 12 42 42 H 1.09002 * 109.47141 * 209.99890 * 16 14 12 43 43 H 1.08995 * 109.47372 * 330.00562 * 16 14 12 44 44 H 0.96997 * 119.99919 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0002 0.9833 0.0000 4 6 2.2365 -1.1210 0.7650 5 6 2.2365 -1.1210 -0.7650 6 1 3.1716 -0.8755 -1.2683 7 6 1.3589 -2.1564 -1.4710 8 7 2.2081 -3.0732 -2.2433 9 6 2.8748 -2.3693 -3.3469 10 6 1.4318 -4.2168 -2.7407 11 6 2.3834 -5.2659 -3.3195 12 6 1.5871 -6.4394 -3.8293 13 8 0.3776 -6.4367 -3.7390 14 7 2.2189 -7.4915 -4.3864 15 6 3.6797 -7.4946 -4.4959 16 6 1.4447 -8.6321 -4.8825 17 6 1.0851 -8.4043 -6.3282 18 1 1.4011 -7.5003 -6.8273 19 6 0.3516 -9.3497 -7.0132 20 7 -0.0338 -10.4504 -6.4052 21 14 -0.0948 -9.0671 -8.8049 22 1 0.4532 -7.7612 -9.2516 23 1 0.4795 -10.1557 -9.6358 24 1 -1.5726 -9.0596 -8.9516 25 1 -0.3633 -0.9261 0.4455 26 1 -0.3634 0.8488 0.5793 27 1 -0.3634 0.0771 -1.0248 28 1 1.6113 -1.8583 1.2687 29 1 3.1716 -0.8754 1.2683 30 1 0.6672 -1.6488 -2.1432 31 1 0.7952 -2.7217 -0.7287 32 1 3.4981 -1.5707 -2.9447 33 1 2.1240 -1.9439 -4.0128 34 1 3.4975 -3.0711 -3.9020 35 1 0.8637 -4.6549 -1.9202 36 1 0.7462 -3.8799 -3.5182 37 1 2.9515 -4.8279 -4.1401 38 1 3.0690 -5.6028 -2.5420 39 1 4.1104 -7.9428 -3.6005 40 1 3.9773 -8.0727 -5.3708 41 1 4.0386 -6.4704 -4.5981 42 1 2.0401 -9.5409 -4.7951 43 1 0.5336 -8.7365 -4.2935 44 1 -0.5495 -11.1156 -6.8873 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000111732698.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:48 Heat of formation + Delta-G solvation = -34.684894 kcal Electronic energy + Delta-G solvation = -20511.665428 eV Core-core repulsion = 17463.864882 eV Total energy + Delta-G solvation = -3047.800546 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.76334 -39.60398 -37.50908 -36.55498 -34.75132 -32.43189 -29.83953 -29.35490 -28.41018 -27.38974 -26.55314 -24.63346 -22.49280 -21.96577 -20.27856 -19.83688 -18.71791 -18.07663 -17.24114 -16.97803 -16.79648 -16.19553 -15.94740 -15.67251 -15.09014 -14.77905 -14.29340 -14.11913 -14.01279 -13.81220 -13.58858 -13.47929 -13.43810 -13.20764 -12.87859 -12.80199 -12.68528 -12.66952 -12.49351 -12.26971 -12.21870 -11.90183 -11.84614 -11.67363 -10.76600 -10.68314 -10.66232 -10.57693 -9.41872 -9.32882 -8.23719 -6.38878 1.35226 1.37715 1.49613 1.84249 2.27154 2.40823 2.78447 3.05464 3.10172 3.73863 3.82635 3.94794 4.00103 4.06272 4.14242 4.38073 4.40712 4.43992 4.47706 4.59510 4.63741 4.72617 4.74463 4.77661 4.91291 4.94640 4.95837 4.96916 4.98996 5.01429 5.04535 5.10334 5.19177 5.22885 5.36386 5.45006 5.55605 5.83929 6.01249 6.05091 6.09745 6.68809 6.79402 7.27040 7.48444 8.83632 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.031738 B = 0.003214 C = 0.003132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.008893 B = 8708.642659 C = 8937.487553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.151 4.151 3 H 0.114 0.886 4 C -0.171 4.171 5 C -0.148 4.148 6 H 0.113 0.887 7 C 0.088 3.912 8 N -0.538 5.538 9 C 0.015 3.985 10 C 0.079 3.921 11 C -0.114 4.114 12 C 0.493 3.507 13 O -0.602 6.602 14 N -0.611 5.611 15 C 0.078 3.922 16 C 0.257 3.743 17 C -0.542 4.542 18 H 0.053 0.947 19 C 0.005 3.995 20 N -0.929 5.929 21 Si 0.970 3.030 22 H -0.266 1.266 23 H -0.268 1.268 24 H -0.282 1.282 25 H 0.051 0.949 26 H 0.070 0.930 27 H 0.055 0.945 28 H 0.089 0.911 29 H 0.102 0.898 30 H 0.032 0.968 31 H 0.067 0.933 32 H 0.087 0.913 33 H 0.019 0.981 34 H 0.078 0.922 35 H 0.065 0.935 36 H 0.020 0.980 37 H 0.111 0.889 38 H 0.120 0.880 39 H 0.071 0.929 40 H 0.065 0.935 41 H 0.095 0.905 42 H 0.024 0.976 43 H -0.004 1.004 44 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.738 19.985 10.576 24.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.170 4.170 3 H 0.132 0.868 4 C -0.208 4.208 5 C -0.166 4.166 6 H 0.131 0.869 7 C -0.040 4.040 8 N -0.262 5.262 9 C -0.133 4.133 10 C -0.049 4.049 11 C -0.154 4.154 12 C 0.283 3.717 13 O -0.485 6.485 14 N -0.343 5.343 15 C -0.064 4.064 16 C 0.135 3.865 17 C -0.581 4.581 18 H 0.071 0.929 19 C -0.193 4.193 20 N -0.569 5.569 21 Si 0.794 3.206 22 H -0.191 1.191 23 H -0.193 1.193 24 H -0.208 1.208 25 H 0.070 0.930 26 H 0.089 0.911 27 H 0.074 0.926 28 H 0.107 0.893 29 H 0.120 0.880 30 H 0.050 0.950 31 H 0.085 0.915 32 H 0.105 0.895 33 H 0.038 0.962 34 H 0.097 0.903 35 H 0.083 0.917 36 H 0.038 0.962 37 H 0.129 0.871 38 H 0.138 0.862 39 H 0.089 0.911 40 H 0.084 0.916 41 H 0.114 0.886 42 H 0.042 0.958 43 H 0.014 0.986 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 9.417 19.615 10.905 24.338 hybrid contribution -1.304 -0.241 -1.450 1.965 sum 8.113 19.374 9.455 23.034 Atomic orbital electron populations 1.21372 0.92973 1.02200 1.01761 1.22482 0.95479 0.94702 1.04336 0.86761 1.23184 1.02771 1.01213 0.93640 1.22299 1.01105 0.98864 0.94353 0.86907 1.21634 0.93541 0.92606 0.96226 1.61977 1.31074 1.08894 1.24258 1.22594 0.98760 0.99400 0.92509 1.21625 0.93942 0.91026 0.98314 1.21552 0.98677 0.92208 1.02952 1.21399 0.88080 0.84705 0.77564 1.90629 1.17123 1.81203 1.59498 1.48205 1.08852 1.19034 1.58161 1.21942 0.77811 1.04054 1.02543 1.18766 0.90535 0.83965 0.93194 1.21738 1.34801 1.04565 0.96970 0.92873 1.25898 0.95271 0.94673 1.03504 1.70061 1.38382 1.09748 1.38733 0.85337 0.77870 0.78581 0.78825 1.19067 1.19272 1.20775 0.93006 0.91129 0.92644 0.89266 0.87950 0.94958 0.91452 0.89467 0.96216 0.90320 0.91676 0.96190 0.87054 0.86190 0.91089 0.91619 0.88649 0.95821 0.98555 0.92370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.79 9.19 71.98 0.66 -1.13 16 2 C -0.15 -2.15 6.41 -10.79 -0.07 -2.22 16 3 H 0.11 1.34 8.14 -2.39 -0.02 1.33 16 4 C -0.17 -2.57 9.82 30.60 0.30 -2.27 16 5 C -0.15 -2.44 5.69 -10.79 -0.06 -2.50 16 6 H 0.11 1.74 6.38 -2.39 -0.02 1.73 16 7 C 0.09 1.82 4.32 86.30 0.37 2.19 16 8 N -0.54 -12.17 4.76 -922.44 -4.39 -16.56 16 9 C 0.02 0.28 9.17 127.69 1.17 1.45 16 10 C 0.08 2.30 4.25 86.30 0.37 2.67 16 11 C -0.11 -3.24 4.18 29.85 0.12 -3.11 16 12 C 0.49 20.92 7.67 87.66 0.67 21.60 16 13 O -0.60 -32.05 15.56 -3.04 -0.05 -32.10 16 14 N -0.61 -26.45 2.86 -851.11 -2.43 -28.89 16 15 C 0.08 2.34 10.24 127.77 1.31 3.65 16 16 C 0.26 14.22 5.16 85.63 0.44 14.66 16 17 C -0.54 -31.86 9.39 25.60 0.24 -31.62 16 18 H 0.05 3.09 7.81 -2.92 -0.02 3.06 16 19 C 0.01 0.31 5.46 84.66 0.46 0.77 16 20 N -0.93 -57.09 13.29 21.45 0.28 -56.81 16 21 Si 0.97 45.44 29.54 68.60 2.03 47.47 16 22 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 23 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 24 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 25 H 0.05 0.79 7.90 -2.38 -0.02 0.77 16 26 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 27 H 0.05 0.83 7.83 -2.39 -0.02 0.81 16 28 H 0.09 1.43 7.94 -2.39 -0.02 1.41 16 29 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.03 0.71 7.75 -2.39 -0.02 0.69 16 31 H 0.07 1.49 7.66 -2.39 -0.02 1.47 16 32 H 0.09 1.30 6.33 -2.39 -0.02 1.28 16 33 H 0.02 0.39 8.14 -2.39 -0.02 0.37 16 34 H 0.08 1.34 6.30 -2.38 -0.02 1.33 16 35 H 0.06 2.08 7.89 -2.39 -0.02 2.06 16 36 H 0.02 0.66 8.08 -2.39 -0.02 0.64 16 37 H 0.11 2.64 5.73 -2.39 -0.01 2.62 16 38 H 0.12 2.84 8.11 -2.39 -0.02 2.82 16 39 H 0.07 1.76 8.14 -2.38 -0.02 1.75 16 40 H 0.06 2.06 8.07 -2.39 -0.02 2.04 16 41 H 0.10 2.12 6.44 -2.39 -0.02 2.10 16 42 H 0.02 1.32 8.07 -2.39 -0.02 1.30 16 43 H 0.00 -0.24 7.42 -2.39 -0.02 -0.25 16 44 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 Total: -1.00 -74.00 353.02 2.38 -71.62 By element: Atomic # 1 Polarization: 10.17 SS G_CDS: 0.95 Total: 11.12 kcal Atomic # 6 Polarization: -1.84 SS G_CDS: 5.99 Total: 4.15 kcal Atomic # 7 Polarization: -95.72 SS G_CDS: -6.54 Total: -102.26 kcal Atomic # 8 Polarization: -32.05 SS G_CDS: -0.05 Total: -32.10 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.47 kcal Total: -74.00 2.38 -71.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111732698.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.939 kcal (2) G-P(sol) polarization free energy of solvation -74.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds