Wall clock time and date at job start Mon Mar 30 2020 04:31:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09006 * 109.49909 * 2 1 4 4 C 1.53113 * 109.50428 * 120.07637 * 2 1 3 5 5 C 1.53124 * 109.15796 * 62.32773 * 4 2 1 6 6 H 1.08995 * 109.49974 * 297.71224 * 5 4 2 7 7 C 1.53006 * 109.53288 * 177.61429 * 5 4 2 8 8 C 1.53040 * 109.27734 * 57.65557 * 5 4 2 9 9 N 1.46842 * 109.52209 * 300.81729 * 8 5 4 10 10 C 1.46902 * 111.00026 * 185.84104 * 9 8 5 11 11 C 1.50703 * 109.46924 * 170.00209 * 10 9 8 12 12 O 1.21279 * 120.00049 * 0.02562 * 11 10 9 13 13 N 1.34779 * 119.99541 * 180.02562 * 11 10 9 14 14 C 1.46499 * 120.00212 * 359.97438 * 13 11 10 15 15 C 1.46502 * 119.99726 * 179.97438 * 13 11 10 16 16 C 1.50691 * 109.47318 * 269.99867 * 15 13 11 17 17 H 1.08001 * 119.99896 * 0.02562 * 16 15 13 18 18 C 1.37874 * 120.00413 * 179.97438 * 16 15 13 19 19 N 1.31517 * 120.00255 * 180.02562 * 18 16 15 20 20 Si 1.86804 * 119.99824 * 0.02562 * 18 16 15 21 21 H 1.48507 * 109.47024 * 89.99663 * 20 18 16 22 22 H 1.48499 * 109.47038 * 209.99658 * 20 18 16 23 23 H 1.48504 * 109.47057 * 329.99923 * 20 18 16 24 24 C 1.46846 * 111.19668 * 61.74424 * 9 8 5 25 25 H 1.09003 * 109.47121 * 299.92237 * 1 2 3 26 26 H 1.09002 * 109.46927 * 59.92203 * 1 2 3 27 27 H 1.09000 * 109.46957 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.52547 * 302.42022 * 4 2 1 29 29 H 1.09001 * 109.57605 * 182.26013 * 4 2 1 30 30 H 1.08995 * 109.46773 * 300.17398 * 7 5 4 31 31 H 1.09000 * 109.46958 * 60.17545 * 7 5 4 32 32 H 1.08999 * 109.46755 * 180.17963 * 7 5 4 33 33 H 1.08996 * 109.45740 * 180.80593 * 8 5 4 34 34 H 1.09001 * 109.46129 * 60.83335 * 8 5 4 35 35 H 1.08996 * 109.46937 * 50.00523 * 10 9 8 36 36 H 1.08996 * 109.46770 * 289.99825 * 10 9 8 37 37 H 1.09002 * 109.47391 * 270.00122 * 14 13 11 38 38 H 1.09001 * 109.46813 * 150.00179 * 14 13 11 39 39 H 1.09004 * 109.47041 * 30.00306 * 14 13 11 40 40 H 1.09002 * 109.47278 * 30.00038 * 15 13 11 41 41 H 1.09006 * 109.46998 * 149.99560 * 15 13 11 42 42 H 0.96995 * 119.99737 * 180.02562 * 19 18 16 43 43 H 1.09003 * 109.46808 * 58.27417 * 24 9 8 44 44 H 1.09004 * 109.46508 * 178.24332 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0412 -0.7233 1.2489 5 6 1.5758 -2.1816 1.2110 6 1 0.4866 -2.2165 1.2297 7 6 2.1318 -2.9279 2.4255 8 6 2.0863 -2.8416 -0.0720 9 7 1.5692 -2.1136 -1.2376 10 6 1.9247 -2.7996 -2.4870 11 6 1.1791 -2.1701 -3.6355 12 8 0.4261 -1.2412 -3.4332 13 7 1.3492 -2.6395 -4.8874 14 6 2.2592 -3.7613 -5.1318 15 6 0.6239 -2.0280 -6.0038 16 6 -0.6962 -2.7303 -6.1901 17 1 -0.9681 -3.5500 -5.5416 18 6 -1.5575 -2.3259 -7.1879 19 7 -2.7099 -2.9386 -7.3502 20 14 -1.0877 -0.9077 -8.3092 21 1 -0.3595 -1.4324 -9.4924 22 1 -2.3157 -0.2024 -8.7564 23 1 -0.2143 0.0392 -7.5703 24 6 2.0418 -0.7233 -1.2478 25 1 -0.3633 0.5126 0.8907 26 1 -0.3633 0.5151 -0.8893 27 1 -0.3633 -1.0277 -0.0005 28 1 1.6437 -0.2371 2.1399 29 1 3.1305 -0.6891 1.2707 30 1 3.2210 -2.8914 2.4069 31 1 1.7680 -2.4573 3.3389 32 1 1.8025 -3.9665 2.3957 33 1 1.7446 -3.8760 -0.1089 34 1 3.1760 -2.8186 -0.0834 35 1 1.6550 -3.8530 -2.4125 36 1 2.9975 -2.7103 -2.6579 37 1 3.2600 -3.3798 -5.3345 38 1 1.9078 -4.3337 -5.9902 39 1 2.2869 -4.4049 -4.2525 40 1 0.4475 -0.9740 -5.7887 41 1 1.2156 -2.1188 -6.9147 42 1 -3.3156 -2.6543 -8.0524 43 1 3.1317 -0.7101 -1.2538 44 1 1.6677 -0.2190 -2.1388 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000034652487.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:31:57 Heat of formation + Delta-G solvation = -36.447962 kcal Electronic energy + Delta-G solvation = -21679.219137 eV Core-core repulsion = 18631.342138 eV Total energy + Delta-G solvation = -3047.876998 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.87267 -38.45922 -34.96038 -34.13519 -33.05681 -32.48255 -29.12538 -27.24694 -26.65740 -26.51783 -25.68751 -23.12851 -21.82388 -21.35705 -18.67967 -18.35096 -16.91963 -16.48630 -15.86434 -15.27238 -15.06322 -14.87954 -14.37342 -14.15231 -13.94123 -13.70480 -13.26881 -12.84899 -12.66779 -12.55960 -12.31433 -12.06815 -12.00380 -11.82585 -11.69235 -11.54688 -11.33141 -11.21955 -10.87173 -10.82771 -10.52474 -10.47279 -10.26485 -10.05599 -10.03252 -9.49364 -8.88488 -8.56337 -8.06927 -7.63333 -6.05536 -4.03918 3.28630 3.36741 3.40475 3.41605 3.65459 4.21092 4.42398 4.67199 4.79441 4.85948 5.05947 5.18451 5.28262 5.31627 5.39799 5.42452 5.45310 5.48433 5.55788 5.61096 5.69282 5.73394 5.76483 5.84959 5.86947 5.99722 6.03087 6.09237 6.11408 6.16842 6.33239 6.34598 6.49992 6.67886 6.78938 6.98240 7.15481 7.27744 7.39889 7.64792 8.30633 8.50985 8.97761 9.07561 9.54991 11.08030 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.028490 B = 0.004549 C = 0.004311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.566410 B = 6154.090474 C = 6492.899144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.085 4.085 3 H 0.067 0.933 4 C -0.110 4.110 5 C -0.091 4.091 6 H 0.084 0.916 7 C -0.145 4.145 8 C 0.062 3.938 9 N -0.516 5.516 10 C 0.040 3.960 11 C 0.508 3.492 12 O -0.520 6.520 13 N -0.602 5.602 14 C 0.084 3.916 15 C 0.217 3.783 16 C -0.527 4.527 17 H 0.074 0.926 18 C 0.072 3.928 19 N -0.898 5.898 20 Si 0.875 3.125 21 H -0.276 1.276 22 H -0.284 1.284 23 H -0.264 1.264 24 C 0.055 3.945 25 H 0.038 0.962 26 H 0.057 0.943 27 H 0.069 0.931 28 H 0.061 0.939 29 H 0.055 0.945 30 H 0.051 0.949 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.073 0.927 34 H 0.029 0.971 35 H 0.098 0.902 36 H 0.053 0.947 37 H 0.043 0.957 38 H 0.076 0.924 39 H 0.058 0.942 40 H 0.040 0.960 41 H 0.024 0.976 42 H 0.264 0.736 43 H 0.021 0.979 44 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.801 0.612 15.383 20.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.104 4.104 3 H 0.085 0.915 4 C -0.148 4.148 5 C -0.110 4.110 6 H 0.102 0.898 7 C -0.203 4.203 8 C -0.065 4.065 9 N -0.240 5.240 10 C -0.091 4.091 11 C 0.294 3.706 12 O -0.395 6.395 13 N -0.335 5.335 14 C -0.060 4.060 15 C 0.097 3.903 16 C -0.565 4.565 17 H 0.092 0.908 18 C -0.130 4.130 19 N -0.537 5.537 20 Si 0.702 3.298 21 H -0.202 1.202 22 H -0.210 1.210 23 H -0.189 1.189 24 C -0.072 4.072 25 H 0.058 0.942 26 H 0.076 0.924 27 H 0.088 0.912 28 H 0.079 0.921 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.091 0.909 34 H 0.047 0.953 35 H 0.116 0.884 36 H 0.071 0.929 37 H 0.062 0.938 38 H 0.094 0.906 39 H 0.077 0.923 40 H 0.058 0.942 41 H 0.042 0.958 42 H 0.074 0.926 43 H 0.039 0.961 44 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 12.717 1.125 15.388 19.995 hybrid contribution 1.045 0.428 -0.837 1.406 sum 13.762 1.553 14.551 20.088 Atomic orbital electron populations 1.21700 0.94029 1.03008 1.00515 1.21116 0.97383 0.98083 0.93830 0.91456 1.21691 0.99863 0.95293 0.97939 1.21199 1.01681 0.94668 0.93446 0.89813 1.21794 1.00700 1.00214 0.97571 1.22144 0.96610 0.97668 0.90125 1.61476 1.60039 1.02073 1.00433 1.21991 0.97800 0.99438 0.89878 1.20175 0.82889 0.84265 0.83321 1.90632 1.36782 1.28838 1.83284 1.47850 1.44149 1.33622 1.07885 1.21646 0.92575 0.89531 1.02278 1.19629 0.92109 0.95106 0.83483 1.21341 1.00473 1.18167 1.16555 0.90775 1.24859 0.94684 0.96309 0.97177 1.69899 1.09316 1.41432 1.33033 0.86864 0.78501 0.83318 0.81145 1.20169 1.20961 1.18874 1.22301 0.95738 0.88923 1.00236 0.94242 0.92408 0.91190 0.92058 0.92673 0.93021 0.92592 0.92623 0.90901 0.95332 0.88394 0.92900 0.93841 0.90568 0.92328 0.94174 0.95841 0.92608 0.96130 0.88406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.90 8.75 37.16 0.33 -1.58 16 2 C -0.09 -1.08 3.21 -90.54 -0.29 -1.37 16 3 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 4 C -0.11 -1.16 4.79 -26.61 -0.13 -1.29 16 5 C -0.09 -0.96 2.53 -90.53 -0.23 -1.19 16 6 H 0.08 1.00 6.58 -51.93 -0.34 0.66 16 7 C -0.14 -1.21 9.20 37.16 0.34 -0.87 16 8 C 0.06 0.73 4.74 -3.83 -0.02 0.71 16 9 N -0.52 -7.68 3.68 -236.12 -0.87 -8.55 16 10 C 0.04 0.61 4.00 -4.97 -0.02 0.59 16 11 C 0.51 10.37 7.35 -10.98 -0.08 10.29 16 12 O -0.52 -12.68 13.90 5.56 0.08 -12.60 16 13 N -0.60 -12.44 2.86 -182.95 -0.52 -12.96 16 14 C 0.08 1.28 10.24 59.85 0.61 1.89 16 15 C 0.22 5.36 4.23 -5.20 -0.02 5.34 16 16 C -0.53 -15.33 9.94 -34.45 -0.34 -15.67 16 17 H 0.07 2.37 8.06 -52.49 -0.42 1.95 16 18 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 19 N -0.90 -28.02 13.96 55.43 0.77 -27.25 16 20 Si 0.87 21.74 27.47 -169.99 -4.67 17.07 16 21 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 22 H -0.28 -7.04 7.11 56.52 0.40 -6.63 16 23 H -0.26 -6.42 6.54 56.52 0.37 -6.05 16 24 C 0.06 0.81 4.54 -3.84 -0.02 0.80 16 25 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 27 H 0.07 1.08 6.01 -51.93 -0.31 0.77 16 28 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.07 0.80 8.01 -51.93 -0.42 0.39 16 34 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.10 1.34 7.25 -51.93 -0.38 0.97 16 36 H 0.05 0.69 8.09 -51.93 -0.42 0.27 16 37 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.08 1.21 8.07 -51.93 -0.42 0.79 16 39 H 0.06 0.74 6.44 -51.93 -0.33 0.40 16 40 H 0.04 1.07 6.48 -51.93 -0.34 0.73 16 41 H 0.02 0.54 7.50 -51.93 -0.39 0.16 16 42 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 43 H 0.02 0.28 8.14 -51.93 -0.42 -0.15 16 44 H 0.10 1.75 5.78 -51.93 -0.30 1.45 16 LS Contribution 337.77 15.07 5.09 5.09 Total: -1.00 -33.43 337.77 -7.97 -41.40 By element: Atomic # 1 Polarization: 6.01 SS G_CDS: -7.89 Total: -1.87 kcal Atomic # 6 Polarization: -0.36 SS G_CDS: 0.04 Total: -0.33 kcal Atomic # 7 Polarization: -48.14 SS G_CDS: -0.62 Total: -48.76 kcal Atomic # 8 Polarization: -12.68 SS G_CDS: 0.08 Total: -12.60 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -4.67 Total: 17.07 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -33.43 -7.97 -41.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034652487.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.949 kcal (2) G-P(sol) polarization free energy of solvation -33.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds