Wall clock time and date at job start Mon Mar 30 2020 04:35:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.50111 * 2 1 4 4 C 1.53045 * 109.50145 * 120.07141 * 2 1 3 5 5 N 1.46838 * 109.52186 * 179.12145 * 4 2 1 6 6 C 1.46907 * 110.99871 * 174.16096 * 5 4 2 7 7 C 1.50693 * 109.46990 * 293.60631 * 6 5 4 8 8 O 1.21281 * 120.00483 * 353.73066 * 7 6 5 9 9 N 1.34777 * 119.99952 * 173.73228 * 7 6 5 10 10 C 1.46502 * 119.99726 * 359.97438 * 9 7 6 11 11 C 1.46495 * 120.00224 * 180.02562 * 9 7 6 12 12 C 1.50700 * 109.47044 * 269.99594 * 11 9 7 13 13 H 1.08003 * 120.00189 * 0.02562 * 12 11 9 14 14 C 1.37878 * 120.00233 * 179.97438 * 12 11 9 15 15 N 1.31517 * 119.99485 * 0.02562 * 14 12 11 16 16 Si 1.86794 * 120.00357 * 180.02562 * 14 12 11 17 17 H 1.48504 * 109.47228 * 270.00231 * 16 14 12 18 18 H 1.48501 * 109.47121 * 30.00302 * 16 14 12 19 19 H 1.48495 * 109.47520 * 150.00083 * 16 14 12 20 20 C 1.46847 * 111.20088 * 298.26045 * 5 4 2 21 21 C 1.53034 * 109.52506 * 61.74133 * 20 5 4 22 22 C 1.53114 * 109.50405 * 239.87696 * 2 1 3 23 23 H 1.08999 * 109.52214 * 302.30526 * 22 2 1 24 24 C 1.52996 * 109.52617 * 62.44056 * 22 2 1 25 25 H 1.09000 * 109.47139 * 299.93105 * 1 2 3 26 26 H 1.09001 * 109.46871 * 59.92655 * 1 2 3 27 27 H 1.08994 * 109.47310 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.45679 * 59.10629 * 4 2 1 29 29 H 1.09000 * 109.46038 * 299.13928 * 4 2 1 30 30 H 1.09001 * 109.47074 * 173.60312 * 6 5 4 31 31 H 1.08999 * 109.46791 * 53.61020 * 6 5 4 32 32 H 1.08999 * 109.47788 * 269.99982 * 10 9 7 33 33 H 1.09000 * 109.47412 * 30.00830 * 10 9 7 34 34 H 1.09007 * 109.46959 * 149.99848 * 10 9 7 35 35 H 1.09004 * 109.47091 * 150.00216 * 11 9 7 36 36 H 1.08994 * 109.47326 * 30.00110 * 11 9 7 37 37 H 0.97001 * 120.00296 * 359.97438 * 15 14 12 38 38 H 1.09002 * 109.46625 * 181.76496 * 20 5 4 39 39 H 1.09007 * 109.45832 * 301.72565 * 20 5 4 40 40 H 1.09003 * 109.50507 * 180.88559 * 21 20 5 41 41 H 1.09003 * 109.53389 * 60.78500 * 21 20 5 42 42 H 1.08998 * 109.47364 * 59.99292 * 24 22 2 43 43 H 1.08999 * 109.47112 * 179.97438 * 24 22 2 44 44 H 1.09008 * 109.46420 * 299.99850 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0409 -0.7229 1.2485 5 7 3.5091 -0.7415 1.2383 6 6 4.0371 -1.3047 2.4882 7 6 3.7055 -0.3835 3.6338 8 8 3.1916 0.6934 3.4168 9 7 3.9801 -0.7563 4.8995 10 6 4.6003 -2.0574 5.1617 11 6 3.6572 0.1389 6.0132 12 6 4.8332 1.0395 6.2909 13 1 5.7311 0.9538 5.6969 14 6 4.7625 1.9736 7.3026 15 7 3.6689 2.0782 8.0256 16 14 6.2198 3.0903 7.6464 17 1 7.1138 2.4454 8.6416 18 1 6.9702 3.3268 6.3870 19 1 5.7343 4.3866 8.1840 20 6 4.0229 -1.4729 0.0732 21 6 3.5712 -0.7725 -1.2103 22 6 2.0412 -0.7243 -1.2484 23 1 1.6453 -1.7397 -1.2681 24 6 1.5831 0.0277 -2.4995 25 1 -0.3633 0.5128 0.8906 26 1 -0.3633 0.5150 -0.8893 27 1 -0.3633 -1.0276 -0.0005 28 1 1.6647 -1.7459 1.2552 29 1 1.6904 -0.2013 2.1391 30 1 5.1190 -1.4123 2.4098 31 1 3.5869 -2.2815 2.6653 32 1 3.8233 -2.8087 5.3024 33 1 5.2280 -2.3378 4.3158 34 1 5.2115 -1.9937 6.0620 35 1 3.4345 -0.4520 6.9016 36 1 2.7893 0.7446 5.7527 37 1 2.9119 1.4985 7.8469 38 1 5.1121 -1.4962 0.1103 39 1 3.6374 -2.4925 0.0855 40 1 3.9395 -1.3244 -2.0751 41 1 3.9679 0.2426 -1.2305 42 1 1.9813 1.0421 -2.4799 43 1 1.9478 -0.4884 -3.3876 44 1 0.4939 0.0653 -2.5222 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000122778040.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:35:48 Heat of formation + Delta-G solvation = -46.971977 kcal Electronic energy + Delta-G solvation = -21491.681493 eV Core-core repulsion = 18443.348139 eV Total energy + Delta-G solvation = -3048.333354 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.80480 -38.45632 -35.15824 -34.60461 -32.79861 -32.15290 -29.45920 -27.66579 -26.84590 -25.92477 -24.83594 -22.71652 -22.19829 -21.32350 -19.61256 -18.56489 -16.91592 -16.38806 -15.77745 -15.44711 -14.90820 -14.67339 -14.45925 -14.33774 -13.83961 -13.63433 -13.16752 -13.03094 -12.62519 -12.50637 -12.20440 -12.11239 -12.04442 -11.88090 -11.78538 -11.65601 -11.28644 -11.25954 -11.00883 -10.87049 -10.57929 -10.54404 -10.20260 -10.09721 -10.08805 -9.08723 -8.90939 -8.35579 -8.11865 -7.57194 -6.35688 -4.07342 3.40959 3.44894 3.51016 3.62639 3.67164 4.19759 4.56521 4.67989 4.70657 4.74932 5.01160 5.18862 5.29646 5.33810 5.38503 5.40066 5.43265 5.49360 5.52788 5.56421 5.60397 5.63786 5.71209 5.73853 5.85343 5.87731 5.92869 5.98636 6.02791 6.13298 6.16939 6.25771 6.33623 6.50374 6.80076 7.08260 7.17836 7.24029 7.44941 8.07226 8.33790 8.47220 8.81288 9.09737 9.62399 11.01629 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.026610 B = 0.004215 C = 0.004102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.988995 B = 6642.070852 C = 6824.369309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.082 4.082 3 H 0.081 0.919 4 C 0.060 3.940 5 N -0.519 5.519 6 C 0.040 3.960 7 C 0.505 3.495 8 O -0.521 6.521 9 N -0.603 5.603 10 C 0.085 3.915 11 C 0.237 3.763 12 C -0.605 4.605 13 H 0.051 0.949 14 C 0.019 3.981 15 N -0.911 5.911 16 Si 1.074 2.926 17 H -0.288 1.288 18 H -0.289 1.289 19 H -0.283 1.283 20 C 0.057 3.943 21 C -0.110 4.110 22 C -0.089 4.089 23 H 0.063 0.937 24 C -0.146 4.146 25 H 0.057 0.943 26 H 0.058 0.942 27 H 0.049 0.951 28 H 0.023 0.977 29 H 0.091 0.909 30 H 0.098 0.902 31 H 0.052 0.948 32 H 0.042 0.958 33 H 0.056 0.944 34 H 0.073 0.927 35 H 0.020 0.980 36 H 0.033 0.967 37 H 0.267 0.733 38 H 0.073 0.927 39 H 0.029 0.971 40 H 0.064 0.936 41 H 0.073 0.927 42 H 0.055 0.945 43 H 0.050 0.950 44 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.927 -10.822 -17.403 20.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.100 4.100 3 H 0.100 0.900 4 C -0.067 4.067 5 N -0.244 5.244 6 C -0.091 4.091 7 C 0.290 3.710 8 O -0.397 6.397 9 N -0.337 5.337 10 C -0.059 4.059 11 C 0.117 3.883 12 C -0.643 4.643 13 H 0.070 0.930 14 C -0.185 4.185 15 N -0.547 5.547 16 Si 0.903 3.097 17 H -0.215 1.215 18 H -0.215 1.215 19 H -0.209 1.209 20 C -0.071 4.071 21 C -0.148 4.148 22 C -0.108 4.108 23 H 0.081 0.919 24 C -0.204 4.204 25 H 0.076 0.924 26 H 0.077 0.923 27 H 0.069 0.931 28 H 0.041 0.959 29 H 0.109 0.891 30 H 0.116 0.884 31 H 0.070 0.930 32 H 0.061 0.939 33 H 0.075 0.925 34 H 0.092 0.908 35 H 0.038 0.962 36 H 0.051 0.949 37 H 0.077 0.923 38 H 0.092 0.908 39 H 0.047 0.953 40 H 0.083 0.917 41 H 0.091 0.909 42 H 0.075 0.925 43 H 0.069 0.931 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -1.512 -8.528 -16.555 18.684 hybrid contribution -0.611 -2.295 -0.816 2.512 sum -2.124 -10.823 -17.372 20.577 Atomic orbital electron populations 1.21833 0.95252 1.01425 1.01946 1.21154 0.94918 1.00656 0.93310 0.90035 1.22237 0.86488 0.98127 0.99870 1.61492 1.08735 1.53570 1.00564 1.22001 1.01422 0.95767 0.89898 1.20186 0.79847 0.87519 0.83407 1.90653 1.42780 1.22572 1.83652 1.47980 1.60393 1.18210 1.07078 1.21611 0.97207 0.84991 1.02083 1.19307 0.97514 0.88665 0.82792 1.22285 1.01053 1.21130 1.19870 0.93036 1.25815 1.02138 0.97474 0.93077 1.70775 1.04315 1.39554 1.40082 0.83466 0.74308 0.76266 0.75695 1.21482 1.21492 1.20870 1.22098 0.99806 0.94651 0.90556 1.21631 0.95362 1.01762 0.96057 1.21227 0.95437 0.99141 0.94946 0.91850 1.21856 1.01138 1.00479 0.96891 0.92395 0.92349 0.93146 0.95922 0.89070 0.88439 0.92994 0.93918 0.92492 0.90771 0.96222 0.94917 0.92253 0.90835 0.95307 0.91741 0.90869 0.92549 0.93075 0.92519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 8.90 37.16 0.33 -1.30 16 2 C -0.08 -1.04 2.38 -90.54 -0.22 -1.26 16 3 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 4 C 0.06 0.91 4.40 -3.83 -0.02 0.89 16 5 N -0.52 -8.02 4.35 -236.11 -1.03 -9.05 16 6 C 0.04 0.64 3.91 -4.98 -0.02 0.62 16 7 C 0.50 10.81 7.20 -10.99 -0.08 10.73 16 8 O -0.52 -13.42 14.29 5.56 0.08 -13.34 16 9 N -0.60 -13.12 2.86 -182.96 -0.52 -13.64 16 10 C 0.09 1.38 10.12 59.85 0.61 1.98 16 11 C 0.24 6.29 4.47 -5.20 -0.02 6.27 16 12 C -0.60 -17.68 9.39 -34.44 -0.32 -18.00 16 13 H 0.05 1.53 7.81 -52.48 -0.41 1.12 16 14 C 0.02 0.56 5.46 -17.82 -0.10 0.46 16 15 N -0.91 -28.19 13.65 55.43 0.76 -27.43 16 16 Si 1.07 26.11 29.90 -169.99 -5.08 21.02 16 17 H -0.29 -6.61 7.11 56.52 0.40 -6.20 16 18 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 19 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 20 C 0.06 0.67 5.46 -3.84 -0.02 0.65 16 21 C -0.11 -1.17 5.38 -26.65 -0.14 -1.31 16 22 C -0.09 -0.93 2.29 -90.50 -0.21 -1.14 16 23 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 24 C -0.15 -1.31 8.91 37.16 0.33 -0.98 16 25 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.06 0.56 6.51 -51.93 -0.34 0.23 16 27 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.09 1.68 6.06 -51.93 -0.31 1.37 16 30 H 0.10 1.39 7.55 -51.93 -0.39 0.99 16 31 H 0.05 0.71 7.90 -51.93 -0.41 0.30 16 32 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.06 0.75 6.61 -51.93 -0.34 0.40 16 34 H 0.07 1.24 8.07 -51.93 -0.42 0.82 16 35 H 0.02 0.52 7.94 -51.93 -0.41 0.11 16 36 H 0.03 0.97 7.29 -51.93 -0.38 0.59 16 37 H 0.27 8.21 7.22 -40.82 -0.29 7.91 16 38 H 0.07 0.81 8.01 -51.93 -0.42 0.39 16 39 H 0.03 0.31 8.14 -51.92 -0.42 -0.11 16 40 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 43 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.06 0.48 6.50 -51.92 -0.34 0.14 16 LS Contribution 341.68 15.07 5.15 5.15 Total: -1.00 -33.97 341.68 -8.44 -42.41 By element: Atomic # 1 Polarization: 5.18 SS G_CDS: -7.91 Total: -2.73 kcal Atomic # 6 Polarization: -2.51 SS G_CDS: 0.12 Total: -2.39 kcal Atomic # 7 Polarization: -49.33 SS G_CDS: -0.79 Total: -50.12 kcal Atomic # 8 Polarization: -13.42 SS G_CDS: 0.08 Total: -13.34 kcal Atomic # 14 Polarization: 26.11 SS G_CDS: -5.08 Total: 21.02 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -33.97 -8.44 -42.41 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122778040.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.566 kcal (2) G-P(sol) polarization free energy of solvation -33.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds