Wall clock time and date at job start Mon Mar 30 2020 04:35:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.50111 * 2 1 4 4 C 1.53045 * 109.50145 * 120.07141 * 2 1 3 5 5 N 1.46838 * 109.52186 * 179.12145 * 4 2 1 6 6 C 1.46907 * 110.99871 * 174.16096 * 5 4 2 7 7 C 1.50693 * 109.46990 * 293.60631 * 6 5 4 8 8 O 1.21281 * 120.00483 * 353.73066 * 7 6 5 9 9 N 1.34777 * 119.99952 * 173.73228 * 7 6 5 10 10 C 1.46502 * 119.99726 * 359.97438 * 9 7 6 11 11 C 1.46495 * 120.00224 * 180.02562 * 9 7 6 12 12 C 1.50700 * 109.47044 * 269.99594 * 11 9 7 13 13 H 1.08003 * 120.00189 * 0.02562 * 12 11 9 14 14 C 1.37878 * 120.00233 * 179.97438 * 12 11 9 15 15 N 1.31517 * 119.99485 * 0.02562 * 14 12 11 16 16 Si 1.86794 * 120.00357 * 180.02562 * 14 12 11 17 17 H 1.48504 * 109.47228 * 270.00231 * 16 14 12 18 18 H 1.48501 * 109.47121 * 30.00302 * 16 14 12 19 19 H 1.48495 * 109.47520 * 150.00083 * 16 14 12 20 20 C 1.46847 * 111.20088 * 298.26045 * 5 4 2 21 21 C 1.53034 * 109.52506 * 61.74133 * 20 5 4 22 22 C 1.53114 * 109.50405 * 239.87696 * 2 1 3 23 23 H 1.08999 * 109.52214 * 302.30526 * 22 2 1 24 24 C 1.52996 * 109.52617 * 62.44056 * 22 2 1 25 25 H 1.09000 * 109.47139 * 299.93105 * 1 2 3 26 26 H 1.09001 * 109.46871 * 59.92655 * 1 2 3 27 27 H 1.08994 * 109.47310 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.45679 * 59.10629 * 4 2 1 29 29 H 1.09000 * 109.46038 * 299.13928 * 4 2 1 30 30 H 1.09001 * 109.47074 * 173.60312 * 6 5 4 31 31 H 1.08999 * 109.46791 * 53.61020 * 6 5 4 32 32 H 1.08999 * 109.47788 * 269.99982 * 10 9 7 33 33 H 1.09000 * 109.47412 * 30.00830 * 10 9 7 34 34 H 1.09007 * 109.46959 * 149.99848 * 10 9 7 35 35 H 1.09004 * 109.47091 * 150.00216 * 11 9 7 36 36 H 1.08994 * 109.47326 * 30.00110 * 11 9 7 37 37 H 0.97001 * 120.00296 * 359.97438 * 15 14 12 38 38 H 1.09002 * 109.46625 * 181.76496 * 20 5 4 39 39 H 1.09007 * 109.45832 * 301.72565 * 20 5 4 40 40 H 1.09003 * 109.50507 * 180.88559 * 21 20 5 41 41 H 1.09003 * 109.53389 * 60.78500 * 21 20 5 42 42 H 1.08998 * 109.47364 * 59.99292 * 24 22 2 43 43 H 1.08999 * 109.47112 * 179.97438 * 24 22 2 44 44 H 1.09008 * 109.46420 * 299.99850 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0409 -0.7229 1.2485 5 7 3.5091 -0.7415 1.2383 6 6 4.0371 -1.3047 2.4882 7 6 3.7055 -0.3835 3.6338 8 8 3.1916 0.6934 3.4168 9 7 3.9801 -0.7563 4.8995 10 6 4.6003 -2.0574 5.1617 11 6 3.6572 0.1389 6.0132 12 6 4.8332 1.0395 6.2909 13 1 5.7311 0.9538 5.6969 14 6 4.7625 1.9736 7.3026 15 7 3.6689 2.0782 8.0256 16 14 6.2198 3.0903 7.6464 17 1 7.1138 2.4454 8.6416 18 1 6.9702 3.3268 6.3870 19 1 5.7343 4.3866 8.1840 20 6 4.0229 -1.4729 0.0732 21 6 3.5712 -0.7725 -1.2103 22 6 2.0412 -0.7243 -1.2484 23 1 1.6453 -1.7397 -1.2681 24 6 1.5831 0.0277 -2.4995 25 1 -0.3633 0.5128 0.8906 26 1 -0.3633 0.5150 -0.8893 27 1 -0.3633 -1.0276 -0.0005 28 1 1.6647 -1.7459 1.2552 29 1 1.6904 -0.2013 2.1391 30 1 5.1190 -1.4123 2.4098 31 1 3.5869 -2.2815 2.6653 32 1 3.8233 -2.8087 5.3024 33 1 5.2280 -2.3378 4.3158 34 1 5.2115 -1.9937 6.0620 35 1 3.4345 -0.4520 6.9016 36 1 2.7893 0.7446 5.7527 37 1 2.9119 1.4985 7.8469 38 1 5.1121 -1.4962 0.1103 39 1 3.6374 -2.4925 0.0855 40 1 3.9395 -1.3244 -2.0751 41 1 3.9679 0.2426 -1.2305 42 1 1.9813 1.0421 -2.4799 43 1 1.9478 -0.4884 -3.3876 44 1 0.4939 0.0653 -2.5222 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000122778040.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:35:48 Heat of formation + Delta-G solvation = -69.915875 kcal Electronic energy + Delta-G solvation = -21492.676415 eV Core-core repulsion = 18443.348139 eV Total energy + Delta-G solvation = -3049.328276 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.13722 -39.81469 -36.80615 -35.90009 -34.93301 -33.08917 -30.74379 -29.24063 -28.00556 -27.28923 -26.35475 -24.61184 -23.20711 -22.37297 -20.55520 -20.23576 -19.03768 -17.94312 -17.24607 -16.79612 -16.28835 -15.89338 -15.68125 -15.48441 -15.26298 -15.09872 -14.64976 -14.26434 -13.89638 -13.79274 -13.67082 -13.54813 -13.34747 -13.09601 -12.93470 -12.81487 -12.70176 -12.62385 -12.46549 -12.38425 -11.99335 -11.92793 -11.51577 -11.20496 -11.11912 -11.05718 -10.62424 -10.56837 -9.47123 -9.22840 -8.70585 -6.46727 1.47672 1.58639 1.75808 1.78863 2.17180 2.52611 2.95133 3.08547 3.64446 3.76925 3.82036 3.91155 4.13848 4.22305 4.24452 4.34596 4.43672 4.46672 4.57184 4.58593 4.63238 4.67224 4.70390 4.76991 4.83728 4.86128 4.88353 4.91689 4.94415 5.09332 5.09873 5.20034 5.25251 5.34193 5.43946 5.54425 5.58922 5.80961 5.97924 6.13973 6.19836 6.43503 6.70144 7.29159 7.44920 8.63758 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.026610 B = 0.004215 C = 0.004102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.988995 B = 6642.070852 C = 6824.369309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.080 4.080 3 H 0.050 0.950 4 C 0.065 3.935 5 N -0.546 5.546 6 C 0.055 3.945 7 C 0.493 3.507 8 O -0.579 6.579 9 N -0.612 5.612 10 C 0.080 3.920 11 C 0.248 3.752 12 C -0.616 4.616 13 H 0.044 0.956 14 C -0.032 4.032 15 N -0.932 5.932 16 Si 1.122 2.878 17 H -0.261 1.261 18 H -0.280 1.280 19 H -0.282 1.282 20 C 0.056 3.944 21 C -0.109 4.109 22 C -0.083 4.083 23 H 0.076 0.924 24 C -0.143 4.143 25 H 0.037 0.963 26 H 0.074 0.926 27 H 0.064 0.936 28 H 0.038 0.962 29 H 0.045 0.955 30 H 0.121 0.879 31 H 0.083 0.917 32 H 0.070 0.930 33 H 0.095 0.905 34 H 0.064 0.936 35 H 0.018 0.982 36 H -0.010 1.010 37 H 0.255 0.745 38 H 0.085 0.915 39 H 0.048 0.952 40 H 0.092 0.908 41 H 0.054 0.946 42 H 0.045 0.955 43 H 0.068 0.932 44 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.426 -13.009 -19.383 23.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.099 4.099 3 H 0.069 0.931 4 C -0.063 4.063 5 N -0.272 5.272 6 C -0.075 4.075 7 C 0.281 3.719 8 O -0.458 6.458 9 N -0.345 5.345 10 C -0.062 4.062 11 C 0.126 3.874 12 C -0.655 4.655 13 H 0.062 0.938 14 C -0.230 4.230 15 N -0.569 5.569 16 Si 0.943 3.057 17 H -0.186 1.186 18 H -0.205 1.205 19 H -0.207 1.207 20 C -0.070 4.070 21 C -0.147 4.147 22 C -0.102 4.102 23 H 0.095 0.905 24 C -0.201 4.201 25 H 0.057 0.943 26 H 0.093 0.907 27 H 0.083 0.917 28 H 0.056 0.944 29 H 0.063 0.937 30 H 0.139 0.861 31 H 0.101 0.899 32 H 0.088 0.912 33 H 0.114 0.886 34 H 0.083 0.917 35 H 0.036 0.964 36 H 0.008 0.992 37 H 0.064 0.936 38 H 0.103 0.897 39 H 0.066 0.934 40 H 0.111 0.889 41 H 0.073 0.927 42 H 0.065 0.935 43 H 0.087 0.913 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -0.001 -10.787 -18.551 21.459 hybrid contribution -1.125 -1.640 -0.216 2.001 sum -1.126 -12.427 -18.768 22.537 Atomic orbital electron populations 1.21808 0.94167 1.02282 1.01789 1.21127 0.95871 0.99017 0.93911 0.93136 1.22108 0.86805 0.98460 0.98915 1.61442 1.08833 1.55327 1.01567 1.21921 1.02924 0.95027 0.87678 1.21343 0.78396 0.87710 0.84403 1.90625 1.45151 1.25454 1.84564 1.48063 1.60732 1.19468 1.06194 1.21925 0.98301 0.82630 1.03387 1.18824 0.95204 0.88963 0.84419 1.22567 1.01383 1.21831 1.19708 0.93756 1.27399 1.03979 0.98829 0.92825 1.70897 1.04792 1.40022 1.41163 0.82873 0.71639 0.74594 0.76592 1.18550 1.20529 1.20698 1.22219 1.00467 0.95181 0.89175 1.21658 0.95310 1.01085 0.96634 1.21197 0.95468 0.99503 0.94001 0.90525 1.21830 1.01543 0.99924 0.96755 0.94348 0.90746 0.91702 0.94367 0.93680 0.86080 0.89889 0.91152 0.88644 0.91672 0.96427 0.99239 0.93605 0.89687 0.93389 0.88919 0.92716 0.93548 0.91301 0.91919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.13 8.90 71.98 0.64 -2.49 16 2 C -0.08 -2.05 2.38 -10.74 -0.03 -2.07 16 3 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 4 C 0.06 1.96 4.40 86.33 0.38 2.34 16 5 N -0.55 -16.25 4.35 -900.93 -3.92 -20.17 16 6 C 0.06 1.63 3.91 85.55 0.33 1.96 16 7 C 0.49 21.43 7.20 87.65 0.63 22.06 16 8 O -0.58 -31.53 14.29 -3.03 -0.04 -31.57 16 9 N -0.61 -26.84 2.86 -851.14 -2.43 -29.27 16 10 C 0.08 2.40 10.12 127.77 1.29 3.70 16 11 C 0.25 13.75 4.47 85.63 0.38 14.13 16 12 C -0.62 -36.98 9.39 25.60 0.24 -36.74 16 13 H 0.04 2.66 7.81 -2.91 -0.02 2.64 16 14 C -0.03 -1.94 5.46 84.65 0.46 -1.48 16 15 N -0.93 -59.28 13.65 21.45 0.29 -58.99 16 16 Si 1.12 52.53 29.90 68.60 2.05 54.58 16 17 H -0.26 -11.02 7.11 99.48 0.71 -10.32 16 18 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 19 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 20 C 0.06 1.15 5.46 86.32 0.47 1.63 16 21 C -0.11 -2.03 5.38 30.65 0.16 -1.86 16 22 C -0.08 -1.55 2.29 -10.72 -0.02 -1.58 16 23 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 24 C -0.14 -2.23 8.91 71.98 0.64 -1.59 16 25 H 0.04 0.96 8.14 -2.39 -0.02 0.95 16 26 H 0.07 1.37 6.51 -2.39 -0.02 1.35 16 27 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 28 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.04 1.77 6.06 -2.39 -0.01 1.75 16 30 H 0.12 3.01 7.55 -2.39 -0.02 2.99 16 31 H 0.08 1.95 7.90 -2.39 -0.02 1.94 16 32 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 33 H 0.10 2.14 6.61 -2.39 -0.02 2.13 16 34 H 0.06 2.09 8.07 -2.38 -0.02 2.07 16 35 H 0.02 0.98 7.94 -2.39 -0.02 0.96 16 36 H -0.01 -0.66 7.29 -2.39 -0.02 -0.68 16 37 H 0.25 16.40 7.22 -92.71 -0.67 15.73 16 38 H 0.08 1.55 8.01 -2.39 -0.02 1.53 16 39 H 0.05 0.83 8.14 -2.38 -0.02 0.81 16 40 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 41 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 42 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 43 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 44 H 0.06 0.90 6.50 -2.38 -0.02 0.88 16 Total: -1.00 -78.71 341.68 2.59 -76.12 By element: Atomic # 1 Polarization: 10.25 SS G_CDS: 1.04 Total: 11.30 kcal Atomic # 6 Polarization: -7.59 SS G_CDS: 5.59 Total: -2.00 kcal Atomic # 7 Polarization: -102.37 SS G_CDS: -6.05 Total: -108.43 kcal Atomic # 8 Polarization: -31.53 SS G_CDS: -0.04 Total: -31.57 kcal Atomic # 14 Polarization: 52.53 SS G_CDS: 2.05 Total: 54.58 kcal Total: -78.71 2.59 -76.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122778040.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.203 kcal (2) G-P(sol) polarization free energy of solvation -78.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds