Wall clock time and date at job start Mon Mar 30 2020 04:40:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47122 * 2 1 4 4 N 1.46495 * 109.47215 * 120.00516 * 2 1 3 5 5 C 1.46498 * 119.99942 * 299.99448 * 4 2 1 6 6 C 1.50694 * 109.47389 * 270.00238 * 5 4 2 7 7 H 1.07999 * 119.99812 * 0.02562 * 6 5 4 8 8 C 1.37879 * 120.00311 * 180.02562 * 6 5 4 9 9 N 1.31514 * 119.99685 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 120.00237 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.46978 * 59.99672 * 10 8 6 12 12 H 1.48501 * 109.47151 * 180.02562 * 10 8 6 13 13 H 1.48506 * 109.46898 * 299.99691 * 10 8 6 14 14 C 1.34770 * 120.00230 * 119.99837 * 4 2 1 15 15 O 1.21285 * 120.00373 * 180.02562 * 14 4 2 16 16 C 1.50706 * 120.00086 * 359.97438 * 14 4 2 17 17 H 1.09002 * 109.45112 * 39.96956 * 16 14 4 18 18 C 1.53036 * 109.46002 * 280.00091 * 16 14 4 19 19 C 1.53123 * 109.27788 * 180.80194 * 18 16 14 20 20 H 1.09007 * 109.52268 * 297.75177 * 19 18 16 21 21 C 1.52999 * 109.52253 * 177.56250 * 19 18 16 22 22 C 1.53123 * 109.16001 * 57.65365 * 19 18 16 23 23 C 1.53032 * 109.27911 * 302.34817 * 22 19 18 24 24 N 1.46842 * 109.46534 * 159.94930 * 16 14 4 25 25 H 1.09007 * 109.47157 * 299.99589 * 1 2 3 26 26 H 1.09003 * 109.47673 * 59.99479 * 1 2 3 27 27 H 1.08997 * 109.47522 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46553 * 240.00111 * 2 1 3 29 29 H 1.08998 * 109.46948 * 180.02562 * 3 2 1 30 30 H 1.08999 * 109.46999 * 300.00076 * 3 2 1 31 31 H 1.08997 * 109.46952 * 60.00216 * 3 2 1 32 32 H 1.09006 * 109.46986 * 30.00653 * 5 4 2 33 33 H 1.09002 * 109.47241 * 149.99860 * 5 4 2 34 34 H 0.97004 * 120.00264 * 180.02562 * 9 8 6 35 35 H 1.09000 * 109.50632 * 300.74486 * 18 16 14 36 36 H 1.09006 * 109.50216 * 60.86281 * 18 16 14 37 37 H 1.08998 * 109.47352 * 60.00058 * 21 19 18 38 38 H 1.09000 * 109.46881 * 180.02562 * 21 19 18 39 39 H 1.09003 * 109.47137 * 299.99779 * 21 19 18 40 40 H 1.08996 * 109.50416 * 182.40514 * 22 19 18 41 41 H 1.08997 * 109.49749 * 62.28489 * 22 19 18 42 42 H 1.09003 * 109.46473 * 299.16126 * 23 22 19 43 43 H 1.08995 * 109.46713 * 179.19608 * 23 22 19 44 44 H 1.00901 * 111.00403 * 57.65788 * 24 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 1.6645 -0.1902 2.5267 6 6 2.7032 0.8016 2.9829 7 1 3.5428 1.0361 2.3453 8 6 2.5819 1.4098 4.2144 9 7 1.5593 1.1246 4.9906 10 14 3.8691 2.6398 4.7796 11 1 3.9234 3.7743 3.8230 12 1 3.5111 3.1461 6.1290 13 1 5.1965 1.9763 4.8365 14 6 2.7931 -1.7864 1.0723 15 8 3.1971 -2.3586 2.0626 16 6 3.1567 -2.3016 -0.2965 17 1 3.3702 -1.4604 -0.9560 18 6 1.9881 -3.1106 -0.8638 19 6 2.3693 -3.6486 -2.2457 20 1 2.5547 -2.8148 -2.9229 21 6 1.2281 -4.5088 -2.7922 22 6 3.6369 -4.4987 -2.1218 23 6 4.7577 -3.6495 -1.5180 24 7 4.3446 -3.1592 -0.1969 25 1 -0.3634 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8932 -0.5138 -0.8900 29 1 3.1300 1.4425 -0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 0.6904 0.2972 2.4843 33 1 1.6238 -1.0228 3.2291 34 1 1.4736 1.5527 5.8568 35 1 1.7649 -3.9440 -0.1976 36 1 1.1108 -2.4696 -0.9521 37 1 0.3249 -3.9043 -2.8747 38 1 1.5007 -4.8917 -3.7757 39 1 1.0461 -5.3436 -2.1153 40 1 3.9377 -4.8496 -3.1090 41 1 3.4397 -5.3539 -1.4754 42 1 4.9638 -2.8021 -2.1718 43 1 5.6576 -4.2558 -1.4152 44 1 4.1850 -3.9257 0.4396 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000126158272.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:40:21 Heat of formation + Delta-G solvation = -52.240979 kcal Electronic energy + Delta-G solvation = -22160.891211 eV Core-core repulsion = 19112.329376 eV Total energy + Delta-G solvation = -3048.561835 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.99962 -37.95586 -35.89672 -33.31752 -32.80621 -31.17437 -30.73093 -27.55906 -26.93964 -26.72593 -24.03492 -22.78183 -22.03394 -21.02340 -20.24191 -18.05999 -16.80920 -16.38349 -15.75434 -15.09676 -14.74302 -14.50155 -14.30971 -14.02095 -13.78803 -13.54972 -13.38806 -12.83760 -12.71508 -12.43843 -12.23055 -11.82096 -11.72438 -11.56707 -11.50484 -11.41811 -11.20130 -11.11014 -10.88303 -10.82220 -10.75382 -10.50595 -10.47435 -10.31295 -9.95477 -9.49428 -8.79125 -8.36030 -8.15683 -7.57817 -5.97675 -4.00424 3.36035 3.40554 3.41445 3.48190 3.84767 4.44692 4.53658 4.59488 4.66000 4.85261 5.09085 5.17087 5.22748 5.29568 5.36250 5.36838 5.46670 5.53163 5.58417 5.66106 5.67040 5.69130 5.82715 5.87689 5.94279 6.01583 6.04106 6.07004 6.18375 6.27824 6.28875 6.40050 6.62931 6.98648 7.03660 7.24014 7.52404 7.54916 7.64740 7.99667 8.32143 8.52002 8.98619 9.18919 9.63531 11.10466 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.025355 B = 0.005474 C = 0.005028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.056279 B = 5114.268062 C = 5567.307306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.132 3.868 3 C -0.158 4.158 4 N -0.591 5.591 5 C 0.247 3.753 6 C -0.517 4.517 7 H 0.058 0.942 8 C 0.060 3.940 9 N -0.897 5.897 10 Si 0.894 3.106 11 H -0.277 1.277 12 H -0.288 1.288 13 H -0.277 1.277 14 C 0.514 3.486 15 O -0.534 6.534 16 C 0.070 3.930 17 H 0.096 0.904 18 C -0.143 4.143 19 C -0.090 4.090 20 H 0.071 0.929 21 C -0.145 4.145 22 C -0.154 4.154 23 C 0.059 3.941 24 N -0.666 5.666 25 H 0.069 0.931 26 H 0.058 0.942 27 H 0.051 0.949 28 H 0.075 0.925 29 H 0.054 0.946 30 H 0.047 0.953 31 H 0.081 0.919 32 H 0.034 0.966 33 H 0.040 0.960 34 H 0.262 0.738 35 H 0.067 0.933 36 H 0.075 0.925 37 H 0.055 0.945 38 H 0.053 0.947 39 H 0.053 0.947 40 H 0.065 0.935 41 H 0.062 0.938 42 H 0.071 0.929 43 H 0.076 0.924 44 H 0.351 0.649 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.966 -7.336 -17.326 18.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.027 3.973 3 C -0.216 4.216 4 N -0.323 5.323 5 C 0.128 3.872 6 C -0.555 4.555 7 H 0.076 0.924 8 C -0.142 4.142 9 N -0.537 5.537 10 Si 0.722 3.278 11 H -0.203 1.203 12 H -0.213 1.213 13 H -0.202 1.202 14 C 0.299 3.701 15 O -0.411 6.411 16 C -0.044 4.044 17 H 0.114 0.886 18 C -0.183 4.183 19 C -0.109 4.109 20 H 0.090 0.910 21 C -0.203 4.203 22 C -0.194 4.194 23 C -0.071 4.071 24 N -0.297 5.297 25 H 0.088 0.912 26 H 0.077 0.923 27 H 0.070 0.930 28 H 0.093 0.907 29 H 0.073 0.927 30 H 0.066 0.934 31 H 0.100 0.900 32 H 0.051 0.949 33 H 0.058 0.942 34 H 0.072 0.928 35 H 0.086 0.914 36 H 0.094 0.906 37 H 0.074 0.926 38 H 0.072 0.928 39 H 0.072 0.928 40 H 0.084 0.916 41 H 0.081 0.919 42 H 0.089 0.911 43 H 0.094 0.906 44 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -0.390 -7.050 -16.573 18.015 hybrid contribution -0.055 0.137 0.155 0.214 sum -0.445 -6.912 -16.418 17.820 Atomic orbital electron populations 1.22177 0.95685 1.01670 1.02476 1.21030 0.93994 0.94165 0.88112 1.22149 1.01447 0.95723 1.02253 1.48276 1.49213 1.26325 1.08509 1.19217 0.95811 0.94919 0.77263 1.21412 1.08844 1.23261 1.02025 0.92409 1.24918 0.95726 0.97160 0.96350 1.69924 1.29567 1.43475 1.10702 0.86615 0.82173 0.81290 0.77684 1.20316 1.21317 1.20225 1.20078 0.78980 0.81098 0.89942 1.90651 1.52768 1.58262 1.39403 1.21571 0.89927 0.96843 0.96024 0.88584 1.22304 0.98831 1.00600 0.96531 1.21152 0.95099 0.98173 0.96433 0.91031 1.21815 0.98092 0.99796 1.00564 1.22377 0.96341 0.99023 1.01632 1.22043 0.96756 0.98068 0.90248 1.60346 1.34471 1.25062 1.09829 0.91233 0.92328 0.92989 0.90739 0.92690 0.93361 0.90029 0.94860 0.94185 0.92823 0.91403 0.90647 0.92557 0.92783 0.92771 0.91594 0.91920 0.91064 0.90565 0.82903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.36 9.10 37.16 0.34 -2.02 16 2 C 0.13 2.15 2.53 -67.93 -0.17 1.98 16 3 C -0.16 -2.64 8.47 37.16 0.31 -2.33 16 4 N -0.59 -12.44 2.39 -167.47 -0.40 -12.84 16 5 C 0.25 6.41 4.59 -5.20 -0.02 6.39 16 6 C -0.52 -14.53 7.83 -34.44 -0.27 -14.80 16 7 H 0.06 1.64 7.63 -52.49 -0.40 1.24 16 8 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 9 N -0.90 -26.75 13.29 55.43 0.74 -26.01 16 10 Si 0.89 22.13 29.54 -169.99 -5.02 17.11 16 11 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 12 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 13 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 14 C 0.51 10.85 6.92 -10.99 -0.08 10.78 16 15 O -0.53 -13.71 15.77 5.55 0.09 -13.62 16 16 C 0.07 1.09 1.96 -68.87 -0.14 0.96 16 17 H 0.10 1.43 6.62 -51.93 -0.34 1.08 16 18 C -0.14 -1.82 4.37 -26.65 -0.12 -1.94 16 19 C -0.09 -0.90 2.79 -90.49 -0.25 -1.15 16 20 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 21 C -0.15 -1.27 9.20 37.16 0.34 -0.93 16 22 C -0.15 -1.48 5.36 -26.65 -0.14 -1.62 16 23 C 0.06 0.65 6.55 -3.84 -0.03 0.63 16 24 N -0.67 -10.12 6.28 -107.99 -0.68 -10.80 16 25 H 0.07 1.16 6.66 -51.93 -0.35 0.81 16 26 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 27 H 0.05 0.72 7.67 -51.93 -0.40 0.32 16 28 H 0.07 1.03 4.78 -51.93 -0.25 0.79 16 29 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.08 1.61 6.92 -51.93 -0.36 1.25 16 32 H 0.03 0.87 6.43 -51.93 -0.33 0.54 16 33 H 0.04 1.19 7.42 -51.93 -0.39 0.81 16 34 H 0.26 7.43 8.31 -40.82 -0.34 7.10 16 35 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.07 0.94 6.44 -51.93 -0.33 0.60 16 37 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 38 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 40 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 41 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 42 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 43 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.35 5.57 8.31 -39.29 -0.33 5.24 16 LS Contribution 338.63 15.07 5.10 5.10 Total: -1.00 -32.01 338.63 -8.17 -40.18 By element: Atomic # 1 Polarization: 11.00 SS G_CDS: -7.68 Total: 3.32 kcal Atomic # 6 Polarization: -2.12 SS G_CDS: -0.32 Total: -2.44 kcal Atomic # 7 Polarization: -49.31 SS G_CDS: -0.34 Total: -49.65 kcal Atomic # 8 Polarization: -13.71 SS G_CDS: 0.09 Total: -13.62 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -32.01 -8.17 -40.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126158272.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.063 kcal (2) G-P(sol) polarization free energy of solvation -32.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds