Wall clock time and date at job start Mon Mar 30 2020 04:40:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47122 * 2 1 4 4 N 1.46495 * 109.47215 * 120.00516 * 2 1 3 5 5 C 1.46498 * 119.99942 * 299.99448 * 4 2 1 6 6 C 1.50694 * 109.47389 * 270.00238 * 5 4 2 7 7 H 1.07999 * 119.99812 * 0.02562 * 6 5 4 8 8 C 1.37879 * 120.00311 * 180.02562 * 6 5 4 9 9 N 1.31514 * 119.99685 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 120.00237 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.46978 * 59.99672 * 10 8 6 12 12 H 1.48501 * 109.47151 * 180.02562 * 10 8 6 13 13 H 1.48506 * 109.46898 * 299.99691 * 10 8 6 14 14 C 1.34770 * 120.00230 * 119.99837 * 4 2 1 15 15 O 1.21285 * 120.00373 * 180.02562 * 14 4 2 16 16 C 1.50706 * 120.00086 * 359.97438 * 14 4 2 17 17 H 1.09002 * 109.45112 * 39.96956 * 16 14 4 18 18 C 1.53036 * 109.46002 * 280.00091 * 16 14 4 19 19 C 1.53123 * 109.27788 * 180.80194 * 18 16 14 20 20 H 1.09007 * 109.52268 * 297.75177 * 19 18 16 21 21 C 1.52999 * 109.52253 * 177.56250 * 19 18 16 22 22 C 1.53123 * 109.16001 * 57.65365 * 19 18 16 23 23 C 1.53032 * 109.27911 * 302.34817 * 22 19 18 24 24 N 1.46842 * 109.46534 * 159.94930 * 16 14 4 25 25 H 1.09007 * 109.47157 * 299.99589 * 1 2 3 26 26 H 1.09003 * 109.47673 * 59.99479 * 1 2 3 27 27 H 1.08997 * 109.47522 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46553 * 240.00111 * 2 1 3 29 29 H 1.08998 * 109.46948 * 180.02562 * 3 2 1 30 30 H 1.08999 * 109.46999 * 300.00076 * 3 2 1 31 31 H 1.08997 * 109.46952 * 60.00216 * 3 2 1 32 32 H 1.09006 * 109.46986 * 30.00653 * 5 4 2 33 33 H 1.09002 * 109.47241 * 149.99860 * 5 4 2 34 34 H 0.97004 * 120.00264 * 180.02562 * 9 8 6 35 35 H 1.09000 * 109.50632 * 300.74486 * 18 16 14 36 36 H 1.09006 * 109.50216 * 60.86281 * 18 16 14 37 37 H 1.08998 * 109.47352 * 60.00058 * 21 19 18 38 38 H 1.09000 * 109.46881 * 180.02562 * 21 19 18 39 39 H 1.09003 * 109.47137 * 299.99779 * 21 19 18 40 40 H 1.08996 * 109.50416 * 182.40514 * 22 19 18 41 41 H 1.08997 * 109.49749 * 62.28489 * 22 19 18 42 42 H 1.09003 * 109.46473 * 299.16126 * 23 22 19 43 43 H 1.08995 * 109.46713 * 179.19608 * 23 22 19 44 44 H 1.00901 * 111.00403 * 57.65788 * 24 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 1.6645 -0.1902 2.5267 6 6 2.7032 0.8016 2.9829 7 1 3.5428 1.0361 2.3453 8 6 2.5819 1.4098 4.2144 9 7 1.5593 1.1246 4.9906 10 14 3.8691 2.6398 4.7796 11 1 3.9234 3.7743 3.8230 12 1 3.5111 3.1461 6.1290 13 1 5.1965 1.9763 4.8365 14 6 2.7931 -1.7864 1.0723 15 8 3.1971 -2.3586 2.0626 16 6 3.1567 -2.3016 -0.2965 17 1 3.3702 -1.4604 -0.9560 18 6 1.9881 -3.1106 -0.8638 19 6 2.3693 -3.6486 -2.2457 20 1 2.5547 -2.8148 -2.9229 21 6 1.2281 -4.5088 -2.7922 22 6 3.6369 -4.4987 -2.1218 23 6 4.7577 -3.6495 -1.5180 24 7 4.3446 -3.1592 -0.1969 25 1 -0.3634 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8932 -0.5138 -0.8900 29 1 3.1300 1.4425 -0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 0.6904 0.2972 2.4843 33 1 1.6238 -1.0228 3.2291 34 1 1.4736 1.5527 5.8568 35 1 1.7649 -3.9440 -0.1976 36 1 1.1108 -2.4696 -0.9521 37 1 0.3249 -3.9043 -2.8747 38 1 1.5007 -4.8917 -3.7757 39 1 1.0461 -5.3436 -2.1153 40 1 3.9377 -4.8496 -3.1090 41 1 3.4397 -5.3539 -1.4754 42 1 4.9638 -2.8021 -2.1718 43 1 5.6576 -4.2558 -1.4152 44 1 4.1850 -3.9257 0.4396 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000126158272.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:40:20 Heat of formation + Delta-G solvation = -74.076521 kcal Electronic energy + Delta-G solvation = -22161.838071 eV Core-core repulsion = 19112.329376 eV Total energy + Delta-G solvation = -3049.508695 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.39477 -39.21356 -37.53682 -34.94920 -34.24370 -32.43054 -32.27887 -29.33361 -28.02266 -27.95165 -25.67808 -24.11735 -23.27213 -22.45922 -21.12723 -19.59130 -18.58480 -18.27000 -17.14809 -16.61380 -16.13129 -15.93197 -15.42249 -15.28731 -15.03780 -14.81183 -14.73770 -14.19410 -14.00392 -13.86015 -13.56788 -13.31634 -13.22089 -12.88457 -12.74637 -12.62249 -12.58702 -12.40873 -12.35580 -12.24012 -12.12282 -12.08168 -11.62628 -11.61708 -11.52494 -11.32650 -10.59807 -10.41707 -9.42422 -9.25045 -8.18313 -6.29925 1.35721 1.40235 1.46950 1.83499 2.27377 2.43443 3.11128 3.33519 3.54233 3.76455 3.87788 3.98298 4.07161 4.17573 4.22314 4.29867 4.42018 4.47237 4.66637 4.72065 4.81201 4.83990 4.85921 4.87244 4.95488 5.02559 5.04662 5.09171 5.10213 5.13255 5.20072 5.23731 5.35993 5.44740 5.48984 5.57840 5.65256 5.89202 6.07129 6.13190 6.37083 6.75895 6.86427 7.33132 7.53476 8.88764 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.025355 B = 0.005474 C = 0.005028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.056279 B = 5114.268062 C = 5567.307306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.125 3.875 3 C -0.153 4.153 4 N -0.594 5.594 5 C 0.265 3.735 6 C -0.525 4.525 7 H 0.051 0.949 8 C 0.007 3.993 9 N -0.930 5.930 10 Si 0.960 3.040 11 H -0.260 1.260 12 H -0.279 1.279 13 H -0.281 1.281 14 C 0.500 3.500 15 O -0.593 6.593 16 C 0.086 3.914 17 H 0.112 0.888 18 C -0.136 4.136 19 C -0.084 4.084 20 H 0.087 0.913 21 C -0.143 4.143 22 C -0.148 4.148 23 C 0.059 3.941 24 N -0.689 5.689 25 H 0.039 0.961 26 H 0.098 0.902 27 H 0.057 0.943 28 H 0.111 0.889 29 H 0.041 0.959 30 H 0.091 0.909 31 H 0.044 0.956 32 H 0.027 0.973 33 H -0.011 1.011 34 H 0.265 0.735 35 H 0.049 0.951 36 H 0.081 0.919 37 H 0.060 0.940 38 H 0.070 0.930 39 H 0.046 0.954 40 H 0.090 0.910 41 H 0.055 0.945 42 H 0.081 0.919 43 H 0.086 0.914 44 H 0.342 0.658 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.618 -6.895 -20.764 21.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.022 3.978 3 C -0.211 4.211 4 N -0.325 5.325 5 C 0.144 3.856 6 C -0.564 4.564 7 H 0.069 0.931 8 C -0.192 4.192 9 N -0.571 5.571 10 Si 0.785 3.215 11 H -0.185 1.185 12 H -0.204 1.204 13 H -0.207 1.207 14 C 0.288 3.712 15 O -0.473 6.473 16 C -0.027 4.027 17 H 0.130 0.870 18 C -0.176 4.176 19 C -0.102 4.102 20 H 0.105 0.895 21 C -0.200 4.200 22 C -0.188 4.188 23 C -0.070 4.070 24 N -0.320 5.320 25 H 0.058 0.942 26 H 0.117 0.883 27 H 0.076 0.924 28 H 0.128 0.872 29 H 0.060 0.940 30 H 0.110 0.890 31 H 0.063 0.937 32 H 0.045 0.955 33 H 0.008 0.992 34 H 0.074 0.926 35 H 0.068 0.932 36 H 0.099 0.901 37 H 0.079 0.921 38 H 0.089 0.911 39 H 0.065 0.935 40 H 0.109 0.891 41 H 0.073 0.927 42 H 0.099 0.901 43 H 0.104 0.896 44 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -0.056 -6.592 -20.078 21.132 hybrid contribution -0.169 -0.032 1.216 1.228 sum -0.224 -6.624 -18.862 19.993 Atomic orbital electron populations 1.22136 0.94064 1.02251 1.02948 1.21438 0.95338 0.93922 0.87106 1.22094 1.00546 0.95903 1.02548 1.48314 1.49237 1.26740 1.08222 1.18633 0.95244 0.92509 0.79263 1.21614 1.08902 1.23563 1.02278 0.93079 1.25785 0.97789 0.99111 0.96465 1.70045 1.31304 1.44630 1.11094 0.85582 0.78900 0.79225 0.77799 1.18462 1.20445 1.20698 1.21230 0.77742 0.80336 0.91848 1.90610 1.54880 1.59910 1.41935 1.21442 0.91473 0.97753 0.92071 0.87019 1.22267 0.97677 0.99684 0.97944 1.21152 0.95702 0.98900 0.94485 0.89454 1.21789 0.97692 0.99368 1.01146 1.22321 0.95480 0.98354 1.02605 1.22161 0.97679 0.98850 0.88325 1.60361 1.34332 1.25216 1.12085 0.94195 0.88311 0.92409 0.87154 0.94019 0.89029 0.93679 0.95520 0.99244 0.92633 0.93194 0.90067 0.92133 0.91074 0.93521 0.89105 0.92660 0.90054 0.89585 0.83909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.28 9.10 71.98 0.65 -3.62 16 2 C 0.12 3.90 2.53 44.99 0.11 4.01 16 3 C -0.15 -4.91 8.47 71.98 0.61 -4.30 16 4 N -0.59 -25.66 2.39 -802.15 -1.91 -27.58 16 5 C 0.26 14.53 4.59 85.63 0.39 14.93 16 6 C -0.52 -30.66 7.83 25.60 0.20 -30.46 16 7 H 0.05 2.98 7.63 -2.91 -0.02 2.96 16 8 C 0.01 0.40 5.46 84.66 0.46 0.86 16 9 N -0.93 -57.35 13.29 21.45 0.28 -57.07 16 10 Si 0.96 46.14 29.54 68.60 2.03 48.17 16 11 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16 12 H -0.28 -12.97 7.11 99.48 0.71 -12.27 16 13 H -0.28 -13.65 7.11 99.48 0.71 -12.94 16 14 C 0.50 21.75 6.92 87.66 0.61 22.36 16 15 O -0.59 -32.22 15.77 -3.05 -0.05 -32.26 16 16 C 0.09 2.59 1.96 44.19 0.09 2.68 16 17 H 0.11 3.01 6.62 -2.39 -0.02 2.99 16 18 C -0.14 -3.22 4.37 30.65 0.13 -3.09 16 19 C -0.08 -1.38 2.79 -10.71 -0.03 -1.41 16 20 H 0.09 1.23 8.14 -2.38 -0.02 1.22 16 21 C -0.14 -1.99 9.20 71.98 0.66 -1.33 16 22 C -0.15 -2.38 5.36 30.65 0.16 -2.22 16 23 C 0.06 1.16 6.55 86.32 0.57 1.73 16 24 N -0.69 -20.52 6.28 -495.57 -3.11 -23.63 16 25 H 0.04 1.33 6.66 -2.38 -0.02 1.31 16 26 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 27 H 0.06 1.51 7.67 -2.39 -0.02 1.49 16 28 H 0.11 2.69 4.78 -2.39 -0.01 2.67 16 29 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 31 H 0.04 1.78 6.92 -2.39 -0.02 1.76 16 32 H 0.03 1.49 6.43 -2.38 -0.02 1.47 16 33 H -0.01 -0.68 7.42 -2.39 -0.02 -0.70 16 34 H 0.26 15.40 8.31 -92.70 -0.77 14.63 16 35 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 36 H 0.08 1.81 6.44 -2.38 -0.02 1.80 16 37 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 38 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 39 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 40 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 41 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 42 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 43 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 44 H 0.34 11.11 8.31 -89.69 -0.75 10.37 16 Total: -1.00 -74.54 338.63 2.08 -72.45 By element: Atomic # 1 Polarization: 19.56 SS G_CDS: 0.22 Total: 19.78 kcal Atomic # 6 Polarization: -4.49 SS G_CDS: 4.62 Total: 0.14 kcal Atomic # 7 Polarization: -103.54 SS G_CDS: -4.74 Total: -108.28 kcal Atomic # 8 Polarization: -32.22 SS G_CDS: -0.05 Total: -32.26 kcal Atomic # 14 Polarization: 46.14 SS G_CDS: 2.03 Total: 48.17 kcal Total: -74.54 2.08 -72.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126158272.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.625 kcal (2) G-P(sol) polarization free energy of solvation -74.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds