Wall clock time and date at job start Mon Mar 30 2020 04:40:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53007 * 109.46840 * 2 1 4 4 N 1.46500 * 109.46951 * 119.99704 * 2 1 3 5 5 C 1.46503 * 120.00189 * 300.00063 * 4 2 1 6 6 C 1.50700 * 109.47190 * 270.00502 * 5 4 2 7 7 H 1.07999 * 119.99685 * 359.97438 * 6 5 4 8 8 C 1.37880 * 119.99994 * 179.97438 * 6 5 4 9 9 N 1.31511 * 119.99671 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 119.99921 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.46633 * 90.00449 * 10 8 6 12 12 H 1.48496 * 109.47177 * 209.99965 * 10 8 6 13 13 H 1.48498 * 109.47543 * 330.00481 * 10 8 6 14 14 C 1.34773 * 119.99810 * 120.00618 * 4 2 1 15 15 O 1.21286 * 119.99762 * 179.97438 * 14 4 2 16 16 C 1.50697 * 120.00135 * 359.97438 * 14 4 2 17 17 H 1.09000 * 109.46309 * 308.74654 * 16 14 4 18 18 C 1.53043 * 109.40740 * 68.68485 * 16 14 4 19 19 C 1.53125 * 109.27455 * 60.93531 * 18 16 14 20 20 H 1.08998 * 109.51954 * 297.61940 * 19 18 16 21 21 C 1.53002 * 109.52113 * 177.49254 * 19 18 16 22 22 C 1.53113 * 109.21262 * 57.55813 * 19 18 16 23 23 C 1.53043 * 109.28009 * 302.37195 * 22 19 18 24 24 N 1.46846 * 109.46053 * 188.76843 * 16 14 4 25 25 H 1.08998 * 109.47724 * 300.00120 * 1 2 3 26 26 H 1.09004 * 109.47265 * 60.00525 * 1 2 3 27 27 H 1.09001 * 109.47176 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47225 * 240.00034 * 2 1 3 29 29 H 1.08996 * 109.46770 * 179.97438 * 3 2 1 30 30 H 1.09004 * 109.46763 * 299.99782 * 3 2 1 31 31 H 1.08998 * 109.47060 * 59.99474 * 3 2 1 32 32 H 1.09004 * 109.46731 * 30.00211 * 5 4 2 33 33 H 1.08991 * 109.47395 * 150.00002 * 5 4 2 34 34 H 0.97000 * 119.99649 * 180.02562 * 9 8 6 35 35 H 1.08997 * 109.55717 * 300.95799 * 18 16 14 36 36 H 1.09005 * 109.44942 * 180.83990 * 18 16 14 37 37 H 1.08997 * 109.47167 * 300.12903 * 21 19 18 38 38 H 1.08993 * 109.47198 * 180.12234 * 21 19 18 39 39 H 1.09007 * 109.46719 * 60.12413 * 21 19 18 40 40 H 1.08992 * 109.50847 * 62.32243 * 22 19 18 41 41 H 1.09006 * 109.50100 * 182.44118 * 22 19 18 42 42 H 1.08997 * 109.46382 * 179.19409 * 23 22 19 43 43 H 1.08993 * 109.46149 * 299.18272 * 23 22 19 44 44 H 1.00902 * 110.99681 * 65.82907 * 24 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.6644 -0.1900 2.5268 6 6 2.7030 0.8020 2.9830 7 1 3.5430 1.0359 2.3457 8 6 2.5809 1.4111 4.2140 9 7 1.5578 1.1266 4.9897 10 14 3.8688 2.6402 4.7797 11 1 3.4765 4.0043 4.3432 12 1 3.9702 2.6045 6.2608 13 1 5.1834 2.2890 4.1850 14 6 2.7932 -1.7863 1.0726 15 8 3.1979 -2.3577 2.0629 16 6 3.1569 -2.3014 -0.2961 17 1 2.2528 -2.4116 -0.8948 18 6 4.1023 -1.3098 -0.9780 19 6 5.3800 -1.1749 -0.1450 20 1 5.1334 -0.7724 0.8375 21 6 6.3552 -0.2326 -0.8535 22 6 6.0256 -2.5541 0.0142 23 6 5.0239 -3.5085 0.6683 24 7 3.8205 -3.6051 -0.1677 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 3.1299 1.4426 0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6765 1.9564 0.8899 32 1 0.6903 0.2974 2.4843 33 1 1.6237 -1.0224 3.2292 34 1 1.4717 1.5553 5.8555 35 1 3.6156 -0.3378 -1.0581 36 1 4.3540 -1.6745 -1.9740 37 1 6.6011 -0.6358 -1.8359 38 1 7.2652 -0.1389 -0.2610 39 1 5.8938 0.7483 -0.9685 40 1 6.3085 -2.9388 -0.9655 41 1 6.9122 -2.4705 0.6429 42 1 5.4756 -4.4952 0.7701 43 1 4.7520 -3.1301 1.6536 44 1 3.1846 -4.3006 0.1929 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000126158702.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:40:29 Heat of formation + Delta-G solvation = -41.793917 kcal Electronic energy + Delta-G solvation = -22871.484863 eV Core-core repulsion = 19823.376046 eV Total energy + Delta-G solvation = -3048.108816 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.29560 -37.34106 -35.99319 -33.18589 -32.82684 -31.12238 -30.64889 -27.56372 -27.05532 -26.61750 -23.83430 -22.67579 -21.75941 -21.25003 -19.69487 -18.00162 -16.59967 -16.45523 -16.12635 -15.09094 -14.81906 -14.37246 -14.13226 -13.88665 -13.58100 -13.44879 -13.25708 -12.78479 -12.50083 -12.29646 -12.04104 -11.89915 -11.72062 -11.62113 -11.48683 -11.16449 -11.13214 -10.85433 -10.79472 -10.56254 -10.43198 -10.34877 -10.14370 -9.96966 -9.93199 -9.57466 -9.45229 -8.42796 -7.76503 -7.59114 -6.03998 -4.07075 3.28114 3.33935 3.36159 3.41502 3.95066 4.43742 4.46573 4.93818 5.03175 5.06468 5.15497 5.26331 5.30767 5.48559 5.54940 5.59392 5.65032 5.77677 5.85308 5.90316 5.93948 5.99776 6.02240 6.05740 6.16270 6.26062 6.32705 6.34022 6.37416 6.40324 6.55889 6.61664 6.77959 6.96035 7.09120 7.23976 7.47028 7.56255 7.60284 7.92953 8.25445 8.45589 8.91320 9.09892 9.57006 11.04108 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.016563 B = 0.007744 C = 0.006873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1690.118947 B = 3614.639867 C = 4072.836409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.127 3.873 3 C -0.158 4.158 4 N -0.587 5.587 5 C 0.245 3.755 6 C -0.515 4.515 7 H 0.057 0.943 8 C 0.060 3.940 9 N -0.895 5.895 10 Si 0.893 3.107 11 H -0.281 1.281 12 H -0.286 1.286 13 H -0.274 1.274 14 C 0.480 3.520 15 O -0.542 6.542 16 C 0.065 3.935 17 H 0.095 0.905 18 C -0.104 4.104 19 C -0.099 4.099 20 H 0.077 0.923 21 C -0.142 4.142 22 C -0.105 4.105 23 C 0.022 3.978 24 N -0.663 5.663 25 H 0.068 0.932 26 H 0.059 0.941 27 H 0.051 0.949 28 H 0.080 0.920 29 H 0.055 0.945 30 H 0.049 0.951 31 H 0.081 0.919 32 H 0.033 0.967 33 H 0.039 0.961 34 H 0.262 0.738 35 H 0.077 0.923 36 H 0.072 0.928 37 H 0.051 0.949 38 H 0.052 0.948 39 H 0.053 0.947 40 H 0.059 0.941 41 H 0.059 0.941 42 H 0.061 0.939 43 H 0.093 0.907 44 H 0.341 0.659 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.671 -3.535 -13.793 14.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.023 3.977 3 C -0.216 4.216 4 N -0.318 5.318 5 C 0.125 3.875 6 C -0.554 4.554 7 H 0.076 0.924 8 C -0.142 4.142 9 N -0.535 5.535 10 Si 0.721 3.279 11 H -0.207 1.207 12 H -0.212 1.212 13 H -0.199 1.199 14 C 0.266 3.734 15 O -0.422 6.422 16 C -0.049 4.049 17 H 0.113 0.887 18 C -0.142 4.142 19 C -0.118 4.118 20 H 0.095 0.905 21 C -0.199 4.199 22 C -0.143 4.143 23 C -0.107 4.107 24 N -0.292 5.292 25 H 0.087 0.913 26 H 0.078 0.922 27 H 0.070 0.930 28 H 0.098 0.902 29 H 0.074 0.926 30 H 0.068 0.932 31 H 0.099 0.901 32 H 0.051 0.949 33 H 0.057 0.943 34 H 0.072 0.928 35 H 0.096 0.904 36 H 0.091 0.909 37 H 0.070 0.930 38 H 0.071 0.929 39 H 0.072 0.928 40 H 0.078 0.922 41 H 0.078 0.922 42 H 0.080 0.920 43 H 0.110 0.890 44 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 3.147 -3.723 -13.673 14.516 hybrid contribution 0.211 0.897 1.315 1.605 sum 3.358 -2.826 -12.358 13.115 Atomic orbital electron populations 1.22170 0.95690 1.01744 1.02466 1.21142 0.94036 0.94240 0.88300 1.22164 1.01377 0.95687 1.02351 1.48444 1.48551 1.26334 1.08494 1.19222 0.95868 0.94902 0.77483 1.21404 1.08796 1.23244 1.01984 0.92439 1.24922 0.95717 0.97128 0.96403 1.69929 1.29531 1.43277 1.10740 0.86578 0.82101 0.81326 0.77929 1.20709 1.21204 1.19939 1.21619 0.78913 0.81206 0.91680 1.90496 1.53047 1.58538 1.40107 1.21674 0.97852 0.91374 0.94009 0.88676 1.21749 0.95343 0.98165 0.98928 1.21194 0.94855 0.95711 0.99989 0.90472 1.21772 0.99040 0.99162 0.99924 1.21568 0.97591 0.94611 1.00488 1.22487 0.90274 0.99144 0.98774 1.60755 1.08778 1.05776 1.53862 0.91338 0.92240 0.92982 0.90197 0.92616 0.93234 0.90052 0.94947 0.94306 0.92841 0.90446 0.90894 0.93024 0.92918 0.92771 0.92194 0.92198 0.92015 0.88991 0.84228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.35 9.17 37.16 0.34 -2.01 16 2 C 0.13 2.03 2.36 -67.93 -0.16 1.87 16 3 C -0.16 -2.54 8.10 37.16 0.30 -2.24 16 4 N -0.59 -11.92 2.39 -167.47 -0.40 -12.32 16 5 C 0.24 6.20 4.59 -5.19 -0.02 6.17 16 6 C -0.52 -14.06 7.83 -34.44 -0.27 -14.33 16 7 H 0.06 1.57 7.63 -52.49 -0.40 1.17 16 8 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 9 N -0.90 -26.32 13.29 55.43 0.74 -25.59 16 10 Si 0.89 21.72 29.54 -169.99 -5.02 16.70 16 11 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 12 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 13 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 14 C 0.48 9.64 5.68 -10.99 -0.06 9.58 16 15 O -0.54 -13.02 12.95 5.55 0.07 -12.95 16 16 C 0.07 1.01 2.64 -68.87 -0.18 0.82 16 17 H 0.10 1.29 7.31 -51.93 -0.38 0.92 16 18 C -0.10 -1.47 4.47 -26.64 -0.12 -1.58 16 19 C -0.10 -1.52 2.54 -90.50 -0.23 -1.75 16 20 H 0.08 1.50 7.32 -51.93 -0.38 1.12 16 21 C -0.14 -1.83 9.20 37.16 0.34 -1.49 16 22 C -0.10 -1.53 5.38 -26.65 -0.14 -1.67 16 23 C 0.02 0.35 6.16 -3.83 -0.02 0.32 16 24 N -0.66 -9.98 6.53 -107.99 -0.70 -10.68 16 25 H 0.07 1.14 6.66 -51.93 -0.35 0.79 16 26 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.08 1.08 4.38 -51.93 -0.23 0.85 16 29 H 0.05 0.93 7.46 -51.93 -0.39 0.55 16 30 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.08 1.56 6.92 -51.93 -0.36 1.20 16 32 H 0.03 0.84 6.43 -51.93 -0.33 0.51 16 33 H 0.04 1.14 7.42 -51.93 -0.39 0.75 16 34 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 35 H 0.08 1.07 4.72 -51.93 -0.25 0.82 16 36 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.05 0.69 8.14 -51.92 -0.42 0.27 16 40 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 43 H 0.09 1.83 4.88 -52.11 -0.25 1.58 16 44 H 0.34 4.96 8.89 -39.29 -0.35 4.61 16 LS Contribution 329.35 15.07 4.96 4.96 Total: -1.00 -30.53 329.35 -8.09 -38.62 By element: Atomic # 1 Polarization: 13.39 SS G_CDS: -7.41 Total: 5.98 kcal Atomic # 6 Polarization: -4.39 SS G_CDS: -0.33 Total: -4.72 kcal Atomic # 7 Polarization: -48.22 SS G_CDS: -0.37 Total: -48.59 kcal Atomic # 8 Polarization: -13.02 SS G_CDS: 0.07 Total: -12.95 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -30.53 -8.09 -38.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126158702.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.175 kcal (2) G-P(sol) polarization free energy of solvation -30.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds