Wall clock time and date at job start Mon Mar 30 2020 04:40:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53007 * 109.46840 * 2 1 4 4 N 1.46500 * 109.46951 * 119.99704 * 2 1 3 5 5 C 1.46503 * 120.00189 * 300.00063 * 4 2 1 6 6 C 1.50700 * 109.47190 * 270.00502 * 5 4 2 7 7 H 1.07999 * 119.99685 * 359.97438 * 6 5 4 8 8 C 1.37880 * 119.99994 * 179.97438 * 6 5 4 9 9 N 1.31511 * 119.99671 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 119.99921 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.46633 * 90.00449 * 10 8 6 12 12 H 1.48496 * 109.47177 * 209.99965 * 10 8 6 13 13 H 1.48498 * 109.47543 * 330.00481 * 10 8 6 14 14 C 1.34773 * 119.99810 * 120.00618 * 4 2 1 15 15 O 1.21286 * 119.99762 * 179.97438 * 14 4 2 16 16 C 1.50697 * 120.00135 * 359.97438 * 14 4 2 17 17 H 1.09000 * 109.46309 * 308.74654 * 16 14 4 18 18 C 1.53043 * 109.40740 * 68.68485 * 16 14 4 19 19 C 1.53125 * 109.27455 * 60.93531 * 18 16 14 20 20 H 1.08998 * 109.51954 * 297.61940 * 19 18 16 21 21 C 1.53002 * 109.52113 * 177.49254 * 19 18 16 22 22 C 1.53113 * 109.21262 * 57.55813 * 19 18 16 23 23 C 1.53043 * 109.28009 * 302.37195 * 22 19 18 24 24 N 1.46846 * 109.46053 * 188.76843 * 16 14 4 25 25 H 1.08998 * 109.47724 * 300.00120 * 1 2 3 26 26 H 1.09004 * 109.47265 * 60.00525 * 1 2 3 27 27 H 1.09001 * 109.47176 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47225 * 240.00034 * 2 1 3 29 29 H 1.08996 * 109.46770 * 179.97438 * 3 2 1 30 30 H 1.09004 * 109.46763 * 299.99782 * 3 2 1 31 31 H 1.08998 * 109.47060 * 59.99474 * 3 2 1 32 32 H 1.09004 * 109.46731 * 30.00211 * 5 4 2 33 33 H 1.08991 * 109.47395 * 150.00002 * 5 4 2 34 34 H 0.97000 * 119.99649 * 180.02562 * 9 8 6 35 35 H 1.08997 * 109.55717 * 300.95799 * 18 16 14 36 36 H 1.09005 * 109.44942 * 180.83990 * 18 16 14 37 37 H 1.08997 * 109.47167 * 300.12903 * 21 19 18 38 38 H 1.08993 * 109.47198 * 180.12234 * 21 19 18 39 39 H 1.09007 * 109.46719 * 60.12413 * 21 19 18 40 40 H 1.08992 * 109.50847 * 62.32243 * 22 19 18 41 41 H 1.09006 * 109.50100 * 182.44118 * 22 19 18 42 42 H 1.08997 * 109.46382 * 179.19409 * 23 22 19 43 43 H 1.08993 * 109.46149 * 299.18272 * 23 22 19 44 44 H 1.00902 * 110.99681 * 65.82907 * 24 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.6644 -0.1900 2.5268 6 6 2.7030 0.8020 2.9830 7 1 3.5430 1.0359 2.3457 8 6 2.5809 1.4111 4.2140 9 7 1.5578 1.1266 4.9897 10 14 3.8688 2.6402 4.7797 11 1 3.4765 4.0043 4.3432 12 1 3.9702 2.6045 6.2608 13 1 5.1834 2.2890 4.1850 14 6 2.7932 -1.7863 1.0726 15 8 3.1979 -2.3577 2.0629 16 6 3.1569 -2.3014 -0.2961 17 1 2.2528 -2.4116 -0.8948 18 6 4.1023 -1.3098 -0.9780 19 6 5.3800 -1.1749 -0.1450 20 1 5.1334 -0.7724 0.8375 21 6 6.3552 -0.2326 -0.8535 22 6 6.0256 -2.5541 0.0142 23 6 5.0239 -3.5085 0.6683 24 7 3.8205 -3.6051 -0.1677 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 3.1299 1.4426 0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6765 1.9564 0.8899 32 1 0.6903 0.2974 2.4843 33 1 1.6237 -1.0224 3.2292 34 1 1.4717 1.5553 5.8555 35 1 3.6156 -0.3378 -1.0581 36 1 4.3540 -1.6745 -1.9740 37 1 6.6011 -0.6358 -1.8359 38 1 7.2652 -0.1389 -0.2610 39 1 5.8938 0.7483 -0.9685 40 1 6.3085 -2.9388 -0.9655 41 1 6.9122 -2.4705 0.6429 42 1 5.4756 -4.4952 0.7701 43 1 4.7520 -3.1301 1.6536 44 1 3.1846 -4.3006 0.1929 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000126158702.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:40:28 Heat of formation + Delta-G solvation = -62.662873 kcal Electronic energy + Delta-G solvation = -22872.389809 eV Core-core repulsion = 19823.376046 eV Total energy + Delta-G solvation = -3049.013762 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.74004 -38.73709 -37.54017 -34.97370 -34.34308 -32.49597 -32.17742 -29.34038 -28.29014 -27.90000 -25.55552 -24.17680 -23.11284 -22.61515 -21.02052 -19.50442 -18.60935 -17.95023 -17.51294 -16.86397 -16.24537 -16.12477 -15.47359 -15.18773 -14.89284 -14.84170 -14.72210 -14.21581 -14.01513 -13.71130 -13.41468 -13.30286 -13.11976 -13.03361 -12.82226 -12.78465 -12.61542 -12.50170 -12.28199 -12.23480 -12.03101 -11.67184 -11.58778 -11.51450 -11.30981 -11.14755 -10.88806 -10.62583 -9.42018 -9.11737 -8.20853 -6.32234 1.31773 1.34481 1.44053 1.81593 2.30997 2.45882 3.08527 3.21703 3.67454 3.84996 3.87976 3.94559 4.00348 4.27372 4.33589 4.35945 4.45394 4.64030 4.76058 4.77834 4.80157 4.83448 4.86983 4.90001 4.97768 5.02775 5.06325 5.10630 5.15089 5.22023 5.23817 5.31081 5.34682 5.42966 5.52679 5.61382 5.65883 5.91642 5.95779 6.11132 6.33325 6.74016 6.86938 7.31331 7.52748 8.86095 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.016563 B = 0.007744 C = 0.006873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1690.118947 B = 3614.639867 C = 4072.836409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.120 3.880 3 C -0.152 4.152 4 N -0.591 5.591 5 C 0.265 3.735 6 C -0.517 4.517 7 H 0.052 0.948 8 C 0.006 3.994 9 N -0.931 5.931 10 Si 0.957 3.043 11 H -0.264 1.264 12 H -0.284 1.284 13 H -0.275 1.275 14 C 0.470 3.530 15 O -0.592 6.592 16 C 0.074 3.926 17 H 0.127 0.873 18 C -0.100 4.100 19 C -0.101 4.101 20 H 0.023 0.977 21 C -0.136 4.136 22 C -0.100 4.100 23 C 0.022 3.978 24 N -0.648 5.648 25 H 0.036 0.964 26 H 0.098 0.902 27 H 0.056 0.944 28 H 0.117 0.883 29 H 0.045 0.955 30 H 0.091 0.909 31 H 0.042 0.958 32 H 0.022 0.978 33 H -0.013 1.013 34 H 0.264 0.736 35 H 0.082 0.918 36 H 0.106 0.894 37 H 0.078 0.922 38 H 0.049 0.951 39 H 0.053 0.947 40 H 0.084 0.916 41 H 0.058 0.942 42 H 0.077 0.923 43 H 0.047 0.953 44 H 0.343 0.657 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.506 -3.147 -17.356 17.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.018 3.982 3 C -0.210 4.210 4 N -0.322 5.322 5 C 0.143 3.857 6 C -0.556 4.556 7 H 0.070 0.930 8 C -0.193 4.193 9 N -0.571 5.571 10 Si 0.782 3.218 11 H -0.189 1.189 12 H -0.210 1.210 13 H -0.200 1.200 14 C 0.258 3.742 15 O -0.474 6.474 16 C -0.041 4.041 17 H 0.144 0.856 18 C -0.138 4.138 19 C -0.120 4.120 20 H 0.041 0.959 21 C -0.193 4.193 22 C -0.138 4.138 23 C -0.107 4.107 24 N -0.276 5.276 25 H 0.055 0.945 26 H 0.117 0.883 27 H 0.075 0.925 28 H 0.135 0.865 29 H 0.064 0.936 30 H 0.110 0.890 31 H 0.061 0.939 32 H 0.040 0.960 33 H 0.005 0.995 34 H 0.073 0.927 35 H 0.101 0.899 36 H 0.124 0.876 37 H 0.097 0.903 38 H 0.068 0.932 39 H 0.072 0.928 40 H 0.103 0.897 41 H 0.076 0.924 42 H 0.095 0.905 43 H 0.065 0.935 44 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 3.974 -3.326 -17.282 18.042 hybrid contribution -0.060 0.721 2.429 2.535 sum 3.914 -2.605 -14.853 15.579 Atomic orbital electron populations 1.22143 0.94413 1.02222 1.02811 1.21539 0.95118 0.94124 0.87421 1.22100 1.00676 0.95774 1.02463 1.48478 1.48791 1.26955 1.07973 1.18594 0.95095 0.92405 0.79586 1.21597 1.08727 1.23241 1.02050 0.93024 1.25773 0.97734 0.99121 0.96624 1.70053 1.31323 1.44585 1.11156 0.85571 0.79295 0.79611 0.77322 1.18885 1.20983 1.19967 1.22710 0.77685 0.80444 0.93365 1.90502 1.54547 1.59969 1.42405 1.21845 0.99546 0.91652 0.91007 0.85563 1.21803 0.94144 0.98068 0.99752 1.21162 0.96504 0.96426 0.97861 0.95872 1.21727 0.98119 0.98629 1.00833 1.21551 0.96928 0.93839 1.01475 1.22399 0.91245 1.00163 0.96923 1.60840 1.08436 1.05514 1.52806 0.94456 0.88337 0.92483 0.86504 0.93626 0.89046 0.93913 0.95974 0.99484 0.92722 0.89917 0.87608 0.90338 0.93218 0.92766 0.89717 0.92365 0.90484 0.93463 0.83998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.29 9.17 71.98 0.66 -3.63 16 2 C 0.12 3.64 2.36 44.99 0.11 3.74 16 3 C -0.15 -4.69 8.10 71.98 0.58 -4.11 16 4 N -0.59 -24.58 2.39 -802.13 -1.91 -26.50 16 5 C 0.26 14.24 4.59 85.63 0.39 14.64 16 6 C -0.52 -29.54 7.83 25.60 0.20 -29.34 16 7 H 0.05 2.94 7.63 -2.91 -0.02 2.92 16 8 C 0.01 0.33 5.46 84.66 0.46 0.79 16 9 N -0.93 -56.97 13.29 21.45 0.28 -56.68 16 10 Si 0.96 45.66 29.54 68.60 2.03 47.69 16 11 H -0.26 -11.81 7.11 99.48 0.71 -11.10 16 12 H -0.28 -13.40 7.11 99.48 0.71 -12.69 16 13 H -0.27 -13.00 7.11 99.48 0.71 -12.30 16 14 C 0.47 19.24 5.68 87.66 0.50 19.73 16 15 O -0.59 -30.12 12.95 -3.05 -0.04 -30.16 16 16 C 0.07 2.11 2.64 44.19 0.12 2.23 16 17 H 0.13 2.90 7.31 -2.39 -0.02 2.88 16 18 C -0.10 -2.49 4.47 30.65 0.14 -2.35 16 19 C -0.10 -2.95 2.54 -10.71 -0.03 -2.98 16 20 H 0.02 0.92 7.32 -2.39 -0.02 0.90 16 21 C -0.14 -3.15 9.20 71.98 0.66 -2.49 16 22 C -0.10 -2.75 5.38 30.65 0.16 -2.59 16 23 C 0.02 0.68 6.16 86.33 0.53 1.21 16 24 N -0.65 -18.25 6.53 -495.56 -3.23 -21.49 16 25 H 0.04 1.24 6.66 -2.39 -0.02 1.22 16 26 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 27 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 28 H 0.12 2.69 4.38 -2.39 -0.01 2.68 16 29 H 0.04 1.47 7.46 -2.39 -0.02 1.46 16 30 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 31 H 0.04 1.64 6.92 -2.39 -0.02 1.63 16 32 H 0.02 1.23 6.43 -2.39 -0.02 1.21 16 33 H -0.01 -0.82 7.42 -2.39 -0.02 -0.84 16 34 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 35 H 0.08 1.98 4.72 -2.39 -0.01 1.97 16 36 H 0.11 2.05 8.14 -2.38 -0.02 2.03 16 37 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 38 H 0.05 1.16 8.14 -2.39 -0.02 1.15 16 39 H 0.05 1.25 8.14 -2.38 -0.02 1.23 16 40 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 41 H 0.06 1.59 8.14 -2.38 -0.02 1.57 16 42 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 43 H 0.05 1.98 4.88 -5.15 -0.03 1.96 16 44 H 0.34 9.53 8.89 -89.69 -0.80 8.73 16 Total: -1.00 -72.15 329.35 1.78 -70.36 By element: Atomic # 1 Polarization: 21.73 SS G_CDS: 0.17 Total: 21.90 kcal Atomic # 6 Polarization: -9.62 SS G_CDS: 4.49 Total: -5.13 kcal Atomic # 7 Polarization: -99.80 SS G_CDS: -4.86 Total: -104.67 kcal Atomic # 8 Polarization: -30.12 SS G_CDS: -0.04 Total: -30.16 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 2.03 Total: 47.69 kcal Total: -72.15 1.78 -70.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126158702.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.701 kcal (2) G-P(sol) polarization free energy of solvation -72.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds