Wall clock time and date at job start Mon Mar 30 2020 05:50:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52992 * 109.47299 * 2 1 4 4 C 1.52997 * 109.46947 * 120.00332 * 2 1 3 5 5 C 1.50691 * 110.63294 * 60.93499 * 4 2 1 6 6 O 1.21276 * 120.00640 * 233.51427 * 5 4 2 7 7 N 1.34782 * 120.00037 * 53.51816 * 5 4 2 8 8 C 1.46507 * 119.99666 * 5.36233 * 7 5 4 9 9 C 1.46494 * 120.00514 * 185.36017 * 7 5 4 10 10 H 1.09004 * 109.46739 * 0.02562 * 9 7 5 11 11 C 1.52996 * 109.47651 * 239.99933 * 9 7 5 12 12 C 1.50701 * 109.46933 * 119.99739 * 9 7 5 13 13 H 1.07998 * 120.00158 * 0.02562 * 12 9 7 14 14 C 1.37878 * 119.99826 * 179.97438 * 12 9 7 15 15 N 1.31518 * 119.99792 * 180.02562 * 14 12 9 16 16 Si 1.86792 * 120.00111 * 0.02562 * 14 12 9 17 17 H 1.48497 * 109.47442 * 269.99453 * 16 14 12 18 18 H 1.48502 * 109.47430 * 29.99825 * 16 14 12 19 19 H 1.48505 * 109.47384 * 149.99483 * 16 14 12 20 20 C 1.55138 * 110.85478 * 184.15094 * 4 2 1 21 21 C 1.54903 * 101.65509 * 154.10300 * 20 4 2 22 22 N 1.47841 * 104.79851 * 322.92825 * 21 20 4 23 23 C 1.47443 * 108.56464 * 24.09542 * 22 21 20 24 24 H 1.09001 * 109.46775 * 300.00288 * 1 2 3 25 25 H 1.09001 * 109.47153 * 59.99681 * 1 2 3 26 26 H 1.08995 * 109.47589 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46775 * 239.99712 * 2 1 3 28 28 H 1.09006 * 109.47398 * 302.35241 * 3 2 1 29 29 H 1.09004 * 109.47530 * 62.35559 * 3 2 1 30 30 H 1.08997 * 109.47523 * 182.35709 * 3 2 1 31 31 H 1.09000 * 109.47075 * 264.96611 * 8 7 5 32 32 H 1.08999 * 109.47036 * 24.96541 * 8 7 5 33 33 H 1.08995 * 109.46742 * 144.96367 * 8 7 5 34 34 H 1.08994 * 109.47036 * 300.00348 * 11 9 7 35 35 H 1.09003 * 109.46951 * 60.00089 * 11 9 7 36 36 H 1.08995 * 109.47599 * 179.97438 * 11 9 7 37 37 H 0.96998 * 120.00009 * 180.02562 * 15 14 12 38 38 H 1.08998 * 110.98839 * 272.19462 * 20 4 2 39 39 H 1.08998 * 110.99257 * 36.00771 * 20 4 2 40 40 H 1.08998 * 110.37435 * 204.09642 * 21 20 4 41 41 H 1.09003 * 110.47072 * 81.80599 * 21 20 4 42 42 H 1.00896 * 111.00361 * 146.36390 * 22 21 20 43 43 H 1.09005 * 109.89002 * 239.60230 * 23 22 21 44 44 H 1.09001 * 110.02384 * 118.49413 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.5711 -2.1533 1.2641 6 8 0.9821 -2.5886 2.2307 7 7 1.8063 -2.9506 0.2031 8 6 2.6185 -2.4623 -0.9141 9 6 1.2498 -4.3052 0.1670 10 1 0.6789 -4.4878 1.0775 11 6 2.3886 -5.3220 0.0660 12 6 0.3443 -4.4446 -1.0295 13 1 0.1984 -3.6079 -1.6966 14 6 -0.2969 -5.6406 -1.2732 15 7 -1.0867 -5.7624 -2.3177 16 14 -0.0438 -7.0880 -0.1198 17 1 1.1104 -7.8972 -0.5867 18 1 0.2256 -6.5867 1.2518 19 1 -1.2665 -7.9308 -0.1075 20 6 3.5873 -0.6498 1.3352 21 6 3.8224 -0.7836 2.8605 22 7 2.7099 -0.0336 3.4812 23 6 1.5864 0.0146 2.5276 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.6427 1.9684 -0.8682 29 1 1.7117 1.9440 0.9104 30 1 3.1292 1.4427 -0.0423 31 1 1.9660 -2.0616 -1.6899 32 1 3.2877 -1.6777 -0.5612 33 1 3.2062 -3.2845 -1.3225 34 1 2.9591 -5.1392 -0.8445 35 1 3.0435 -5.2211 0.9315 36 1 1.9746 -6.3299 0.0396 37 1 -1.5381 -6.6037 -2.4890 38 1 4.0470 -1.4776 0.7952 39 1 3.9552 0.3074 0.9659 40 1 4.7794 -0.3411 3.1372 41 1 3.7884 -1.8308 3.1610 42 1 2.4276 -0.4595 4.3513 43 1 1.3437 1.0510 2.2925 44 1 0.7147 -0.4830 2.9524 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000232754864.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:50:45 Heat of formation + Delta-G solvation = -17.420759 kcal Electronic energy + Delta-G solvation = -22911.705997 eV Core-core repulsion = 19864.654080 eV Total energy + Delta-G solvation = -3047.051917 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.76764 -37.57616 -35.67999 -34.70186 -32.74261 -30.74429 -29.47190 -28.20056 -27.05274 -26.40891 -25.15357 -23.37715 -21.53627 -21.25890 -19.41889 -18.17430 -16.85643 -16.51344 -16.14040 -15.81064 -15.25488 -14.64031 -14.35345 -13.84904 -13.47746 -13.16413 -13.05322 -12.86082 -12.75215 -12.51106 -12.32098 -12.27236 -11.99598 -11.77897 -11.66009 -11.42771 -11.24517 -11.16068 -10.98486 -10.81535 -10.73195 -10.38007 -10.18608 -10.02637 -9.68219 -9.36719 -8.93244 -8.66837 -8.35219 -7.74374 -6.17937 -4.18548 3.18953 3.20589 3.33945 3.36389 3.74885 4.28501 4.31915 4.59984 4.69671 4.83217 5.04581 5.15414 5.20364 5.34197 5.36929 5.49268 5.53136 5.71371 5.76243 5.79896 5.87011 5.90823 5.95255 5.99689 6.01965 6.15227 6.17965 6.18877 6.24338 6.25865 6.30820 6.44251 6.51520 6.58699 6.80425 6.89505 7.09235 7.31752 7.41256 7.59267 8.15777 8.44563 8.81100 8.87990 9.43313 10.94716 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.025354 B = 0.006644 C = 0.006079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.116627 B = 4213.217538 C = 4604.677760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.092 4.092 3 C -0.148 4.148 4 C -0.093 4.093 5 C 0.523 3.477 6 O -0.556 6.556 7 N -0.582 5.582 8 C 0.072 3.928 9 C 0.230 3.770 10 H 0.060 0.940 11 C -0.161 4.161 12 C -0.527 4.527 13 H 0.079 0.921 14 C 0.076 3.924 15 N -0.894 5.894 16 Si 0.882 3.118 17 H -0.277 1.277 18 H -0.264 1.264 19 H -0.294 1.294 20 C -0.127 4.127 21 C 0.045 3.955 22 N -0.680 5.680 23 C 0.061 3.939 24 H 0.053 0.947 25 H 0.056 0.944 26 H 0.064 0.936 27 H 0.092 0.908 28 H 0.055 0.945 29 H 0.060 0.940 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.070 0.930 33 H 0.068 0.932 34 H 0.056 0.944 35 H 0.032 0.968 36 H 0.050 0.950 37 H 0.266 0.734 38 H 0.083 0.917 39 H 0.090 0.910 40 H 0.077 0.923 41 H 0.042 0.958 42 H 0.339 0.661 43 H 0.083 0.917 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.814 11.690 4.908 16.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.111 4.111 3 C -0.205 4.205 4 C -0.097 4.097 5 C 0.310 3.690 6 O -0.435 6.435 7 N -0.312 5.312 8 C -0.071 4.071 9 C 0.128 3.872 10 H 0.078 0.922 11 C -0.219 4.219 12 C -0.565 4.565 13 H 0.097 0.903 14 C -0.127 4.127 15 N -0.532 5.532 16 Si 0.712 3.288 17 H -0.204 1.204 18 H -0.189 1.189 19 H -0.221 1.221 20 C -0.165 4.165 21 C -0.084 4.084 22 N -0.308 5.308 23 C -0.068 4.068 24 H 0.072 0.928 25 H 0.075 0.925 26 H 0.083 0.917 27 H 0.110 0.890 28 H 0.074 0.926 29 H 0.079 0.921 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.075 0.925 35 H 0.051 0.949 36 H 0.068 0.932 37 H 0.076 0.924 38 H 0.101 0.899 39 H 0.108 0.892 40 H 0.095 0.905 41 H 0.061 0.939 42 H 0.154 0.846 43 H 0.101 0.899 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 9.628 11.960 5.145 16.193 hybrid contribution -0.304 -1.950 0.331 2.001 sum 9.324 10.010 5.475 14.734 Atomic orbital electron populations 1.21863 0.94488 1.03010 1.01409 1.21347 0.96744 0.96092 0.96926 1.21989 1.00896 0.95689 1.01944 1.22014 0.96463 0.93453 0.97798 1.20088 0.79396 0.86851 0.82677 1.90612 1.43318 1.75621 1.33944 1.47746 1.50242 1.15575 1.17595 1.22037 0.94991 0.99765 0.90312 1.19276 0.91431 0.76874 0.99622 0.92180 1.22452 0.99641 0.99896 0.99936 1.21147 1.26328 0.99656 1.09372 0.90287 1.24857 0.94513 0.98391 0.94924 1.69871 1.29740 1.26268 1.27284 0.86934 0.76698 0.82785 0.82377 1.20420 1.18910 1.22109 1.23078 0.93532 1.03322 0.96570 1.22802 0.95436 0.96549 0.93600 1.61967 1.07813 1.54503 1.06557 1.22657 0.93990 0.99918 0.90212 0.92820 0.92503 0.91695 0.89015 0.92574 0.92082 0.92437 0.92321 0.91222 0.91298 0.92518 0.94929 0.93178 0.92431 0.89903 0.89212 0.90472 0.93928 0.84627 0.89917 0.91342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.22 8.77 37.16 0.33 -1.90 16 2 C -0.09 -1.22 2.03 -90.62 -0.18 -1.41 16 3 C -0.15 -1.55 8.57 37.15 0.32 -1.23 16 4 C -0.09 -1.36 0.08 -153.84 -0.01 -1.37 16 5 C 0.52 10.19 5.19 -10.99 -0.06 10.13 16 6 O -0.56 -12.90 14.82 5.56 0.08 -12.82 16 7 N -0.58 -11.67 2.75 -175.27 -0.48 -12.15 16 8 C 0.07 1.16 7.72 59.85 0.46 1.62 16 9 C 0.23 5.50 2.22 -69.09 -0.15 5.35 16 10 H 0.06 1.62 5.97 -51.93 -0.31 1.31 16 11 C -0.16 -3.47 8.64 37.16 0.32 -3.15 16 12 C -0.53 -14.39 8.95 -34.44 -0.31 -14.70 16 13 H 0.08 2.31 7.75 -52.49 -0.41 1.90 16 14 C 0.08 2.15 5.45 -17.82 -0.10 2.06 16 15 N -0.89 -26.73 13.96 55.43 0.77 -25.95 16 16 Si 0.88 21.87 24.37 -169.99 -4.14 17.72 16 17 H -0.28 -6.58 6.87 56.52 0.39 -6.19 16 18 H -0.26 -6.52 6.53 56.52 0.37 -6.15 16 19 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 20 C -0.13 -1.56 4.99 -24.60 -0.12 -1.68 16 21 C 0.05 0.57 7.38 -2.30 -0.02 0.55 16 22 N -0.68 -8.98 7.39 -110.79 -0.82 -9.80 16 23 C 0.06 0.88 5.37 -2.83 -0.02 0.86 16 24 H 0.05 0.74 7.20 -51.93 -0.37 0.36 16 25 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.06 1.21 7.31 -51.93 -0.38 0.83 16 27 H 0.09 1.23 4.29 -51.93 -0.22 1.01 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.64 5.96 -51.93 -0.31 0.33 16 30 H 0.06 0.54 6.17 -51.93 -0.32 0.22 16 31 H 0.06 0.97 6.91 -51.93 -0.36 0.61 16 32 H 0.07 0.89 3.54 -51.93 -0.18 0.71 16 33 H 0.07 1.09 6.45 -51.93 -0.33 0.75 16 34 H 0.06 1.13 6.69 -51.93 -0.35 0.78 16 35 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.05 1.13 3.27 -51.93 -0.17 0.96 16 37 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 38 H 0.08 1.00 5.84 -51.93 -0.30 0.70 16 39 H 0.09 0.94 5.76 -51.93 -0.30 0.64 16 40 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.34 4.36 8.91 -39.29 -0.35 4.01 16 43 H 0.08 1.07 5.41 -51.93 -0.28 0.79 16 44 H 0.07 1.14 6.92 -51.93 -0.36 0.78 16 LS Contribution 312.52 15.07 4.71 4.71 Total: -1.00 -31.30 312.52 -6.02 -37.32 By element: Atomic # 1 Polarization: 12.43 SS G_CDS: -6.60 Total: 5.83 kcal Atomic # 6 Polarization: -5.32 SS G_CDS: 0.46 Total: -4.86 kcal Atomic # 7 Polarization: -47.38 SS G_CDS: -0.53 Total: -47.91 kcal Atomic # 8 Polarization: -12.90 SS G_CDS: 0.08 Total: -12.82 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -4.14 Total: 17.72 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -31.30 -6.02 -37.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232754864.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.903 kcal (2) G-P(sol) polarization free energy of solvation -31.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds