Wall clock time and date at job start Mon Mar 30 2020 05:50:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52992 * 109.47299 * 2 1 4 4 C 1.52997 * 109.46947 * 120.00332 * 2 1 3 5 5 C 1.50691 * 110.63294 * 60.93499 * 4 2 1 6 6 O 1.21276 * 120.00640 * 233.51427 * 5 4 2 7 7 N 1.34782 * 120.00037 * 53.51816 * 5 4 2 8 8 C 1.46507 * 119.99666 * 5.36233 * 7 5 4 9 9 C 1.46494 * 120.00514 * 185.36017 * 7 5 4 10 10 H 1.09004 * 109.46739 * 0.02562 * 9 7 5 11 11 C 1.52996 * 109.47651 * 239.99933 * 9 7 5 12 12 C 1.50701 * 109.46933 * 119.99739 * 9 7 5 13 13 H 1.07998 * 120.00158 * 0.02562 * 12 9 7 14 14 C 1.37878 * 119.99826 * 179.97438 * 12 9 7 15 15 N 1.31518 * 119.99792 * 180.02562 * 14 12 9 16 16 Si 1.86792 * 120.00111 * 0.02562 * 14 12 9 17 17 H 1.48497 * 109.47442 * 269.99453 * 16 14 12 18 18 H 1.48502 * 109.47430 * 29.99825 * 16 14 12 19 19 H 1.48505 * 109.47384 * 149.99483 * 16 14 12 20 20 C 1.55138 * 110.85478 * 184.15094 * 4 2 1 21 21 C 1.54903 * 101.65509 * 154.10300 * 20 4 2 22 22 N 1.47841 * 104.79851 * 322.92825 * 21 20 4 23 23 C 1.47443 * 108.56464 * 24.09542 * 22 21 20 24 24 H 1.09001 * 109.46775 * 300.00288 * 1 2 3 25 25 H 1.09001 * 109.47153 * 59.99681 * 1 2 3 26 26 H 1.08995 * 109.47589 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46775 * 239.99712 * 2 1 3 28 28 H 1.09006 * 109.47398 * 302.35241 * 3 2 1 29 29 H 1.09004 * 109.47530 * 62.35559 * 3 2 1 30 30 H 1.08997 * 109.47523 * 182.35709 * 3 2 1 31 31 H 1.09000 * 109.47075 * 264.96611 * 8 7 5 32 32 H 1.08999 * 109.47036 * 24.96541 * 8 7 5 33 33 H 1.08995 * 109.46742 * 144.96367 * 8 7 5 34 34 H 1.08994 * 109.47036 * 300.00348 * 11 9 7 35 35 H 1.09003 * 109.46951 * 60.00089 * 11 9 7 36 36 H 1.08995 * 109.47599 * 179.97438 * 11 9 7 37 37 H 0.96998 * 120.00009 * 180.02562 * 15 14 12 38 38 H 1.08998 * 110.98839 * 272.19462 * 20 4 2 39 39 H 1.08998 * 110.99257 * 36.00771 * 20 4 2 40 40 H 1.08998 * 110.37435 * 204.09642 * 21 20 4 41 41 H 1.09003 * 110.47072 * 81.80599 * 21 20 4 42 42 H 1.00896 * 111.00361 * 146.36390 * 22 21 20 43 43 H 1.09005 * 109.89002 * 239.60230 * 23 22 21 44 44 H 1.09001 * 110.02384 * 118.49413 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.5711 -2.1533 1.2641 6 8 0.9821 -2.5886 2.2307 7 7 1.8063 -2.9506 0.2031 8 6 2.6185 -2.4623 -0.9141 9 6 1.2498 -4.3052 0.1670 10 1 0.6789 -4.4878 1.0775 11 6 2.3886 -5.3220 0.0660 12 6 0.3443 -4.4446 -1.0295 13 1 0.1984 -3.6079 -1.6966 14 6 -0.2969 -5.6406 -1.2732 15 7 -1.0867 -5.7624 -2.3177 16 14 -0.0438 -7.0880 -0.1198 17 1 1.1104 -7.8972 -0.5867 18 1 0.2256 -6.5867 1.2518 19 1 -1.2665 -7.9308 -0.1075 20 6 3.5873 -0.6498 1.3352 21 6 3.8224 -0.7836 2.8605 22 7 2.7099 -0.0336 3.4812 23 6 1.5864 0.0146 2.5276 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.6427 1.9684 -0.8682 29 1 1.7117 1.9440 0.9104 30 1 3.1292 1.4427 -0.0423 31 1 1.9660 -2.0616 -1.6899 32 1 3.2877 -1.6777 -0.5612 33 1 3.2062 -3.2845 -1.3225 34 1 2.9591 -5.1392 -0.8445 35 1 3.0435 -5.2211 0.9315 36 1 1.9746 -6.3299 0.0396 37 1 -1.5381 -6.6037 -2.4890 38 1 4.0470 -1.4776 0.7952 39 1 3.9552 0.3074 0.9659 40 1 4.7794 -0.3411 3.1372 41 1 3.7884 -1.8308 3.1610 42 1 2.4276 -0.4595 4.3513 43 1 1.3437 1.0510 2.2925 44 1 0.7147 -0.4830 2.9524 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000232754864.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:50:44 Heat of formation + Delta-G solvation = -41.126884 kcal Electronic energy + Delta-G solvation = -22912.733972 eV Core-core repulsion = 19864.654080 eV Total energy + Delta-G solvation = -3048.079892 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.09462 -38.98775 -37.34695 -35.87587 -34.68903 -32.48821 -30.65800 -29.33193 -28.11829 -27.81352 -27.18636 -24.73489 -22.95717 -22.35258 -20.89484 -19.60862 -18.77825 -17.85242 -17.64126 -17.15489 -16.81628 -16.18394 -15.81413 -15.04502 -14.89692 -14.79370 -14.52714 -14.21130 -14.09554 -13.92972 -13.74354 -13.63283 -13.51505 -13.09892 -13.02161 -12.88393 -12.63165 -12.46814 -12.22259 -12.15199 -12.08255 -11.95646 -11.62798 -11.45696 -11.41830 -11.13846 -10.83779 -10.46350 -9.46801 -9.37345 -8.38853 -6.42916 1.20733 1.30650 1.38769 1.68511 2.22827 2.23723 2.96106 3.21040 3.49629 3.51013 3.71581 3.92009 4.17468 4.21316 4.31429 4.35848 4.39684 4.44966 4.50773 4.55964 4.63634 4.69033 4.73105 4.78054 4.80986 4.88903 4.93566 4.96591 5.01908 5.05435 5.14797 5.15573 5.25373 5.28764 5.41612 5.45221 5.56191 5.68501 5.84027 6.17127 6.33228 6.59029 6.71371 7.17676 7.33866 8.77090 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.025354 B = 0.006644 C = 0.006079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.116627 B = 4213.217538 C = 4604.677760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.090 4.090 3 C -0.140 4.140 4 C -0.088 4.088 5 C 0.515 3.485 6 O -0.602 6.602 7 N -0.589 5.589 8 C 0.069 3.931 9 C 0.232 3.768 10 H 0.024 0.976 11 C -0.154 4.154 12 C -0.524 4.524 13 H 0.047 0.953 14 C 0.025 3.975 15 N -0.937 5.937 16 Si 0.938 3.062 17 H -0.253 1.253 18 H -0.267 1.267 19 H -0.295 1.295 20 C -0.121 4.121 21 C 0.043 3.957 22 N -0.674 5.674 23 C 0.065 3.935 24 H 0.059 0.941 25 H 0.070 0.930 26 H 0.014 0.986 27 H 0.091 0.909 28 H 0.068 0.932 29 H 0.063 0.937 30 H 0.078 0.922 31 H 0.050 0.950 32 H 0.109 0.891 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.053 0.947 36 H 0.041 0.959 37 H 0.268 0.732 38 H 0.088 0.912 39 H 0.121 0.879 40 H 0.104 0.896 41 H 0.021 0.979 42 H 0.338 0.662 43 H 0.103 0.897 44 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.647 13.214 5.115 18.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.109 4.109 3 C -0.197 4.197 4 C -0.092 4.092 5 C 0.305 3.695 6 O -0.485 6.485 7 N -0.318 5.318 8 C -0.072 4.072 9 C 0.129 3.871 10 H 0.042 0.958 11 C -0.212 4.212 12 C -0.562 4.562 13 H 0.065 0.935 14 C -0.174 4.174 15 N -0.576 5.576 16 Si 0.766 3.234 17 H -0.178 1.178 18 H -0.192 1.192 19 H -0.222 1.222 20 C -0.158 4.158 21 C -0.086 4.086 22 N -0.302 5.302 23 C -0.065 4.065 24 H 0.078 0.922 25 H 0.089 0.911 26 H 0.033 0.967 27 H 0.109 0.891 28 H 0.087 0.913 29 H 0.082 0.918 30 H 0.097 0.903 31 H 0.069 0.931 32 H 0.127 0.873 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.072 0.928 36 H 0.059 0.941 37 H 0.078 0.922 38 H 0.106 0.894 39 H 0.140 0.860 40 H 0.123 0.877 41 H 0.039 0.961 42 H 0.153 0.847 43 H 0.121 0.879 44 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 12.498 13.506 5.334 19.159 hybrid contribution -1.263 -2.344 0.265 2.675 sum 11.235 11.162 5.599 16.798 Atomic orbital electron populations 1.21842 0.96275 0.99939 1.02483 1.21376 0.95212 0.98305 0.95986 1.21941 1.02131 0.92902 1.02729 1.22018 0.98604 0.89797 0.98769 1.21028 0.78298 0.88604 0.81590 1.90581 1.45274 1.76888 1.35725 1.47787 1.50520 1.14452 1.19019 1.22278 0.94857 1.01038 0.89051 1.18921 0.91957 0.80138 0.96089 0.95760 1.22308 0.98864 0.98197 1.01798 1.21336 1.26760 0.98486 1.09624 0.93486 1.25602 0.94356 1.01177 0.96281 1.69993 1.31215 1.27205 1.29218 0.86021 0.77345 0.79849 0.80204 1.17782 1.19232 1.22229 1.23168 0.90928 1.05202 0.96537 1.22910 0.96288 0.95556 0.93840 1.62084 1.07470 1.54395 1.06300 1.22653 0.93335 1.00403 0.90102 0.92160 0.91054 0.96714 0.89077 0.91300 0.91800 0.90349 0.93144 0.87304 0.90766 0.90805 0.92813 0.94067 0.92246 0.89413 0.86048 0.87741 0.96065 0.84695 0.87946 0.94590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.38 8.77 71.98 0.63 -3.75 16 2 C -0.09 -2.20 2.03 -10.80 -0.02 -2.22 16 3 C -0.14 -2.33 8.57 71.98 0.62 -1.72 16 4 C -0.09 -2.43 0.08 -51.75 0.00 -2.43 16 5 C 0.52 20.29 5.19 87.65 0.45 20.75 16 6 O -0.60 -29.13 14.82 -3.02 -0.04 -29.17 16 7 N -0.59 -23.70 2.75 -826.81 -2.27 -25.97 16 8 C 0.07 2.13 7.72 127.77 0.99 3.12 16 9 C 0.23 11.31 2.22 44.25 0.10 11.41 16 10 H 0.02 1.36 5.97 -2.38 -0.01 1.35 16 11 C -0.15 -6.42 8.64 71.98 0.62 -5.80 16 12 C -0.52 -29.54 8.95 25.60 0.23 -29.31 16 13 H 0.05 2.88 7.75 -2.91 -0.02 2.86 16 14 C 0.02 1.44 5.45 84.65 0.46 1.90 16 15 N -0.94 -57.57 13.96 21.45 0.30 -57.27 16 16 Si 0.94 45.65 24.37 68.60 1.67 47.32 16 17 H -0.25 -11.22 6.87 99.48 0.68 -10.54 16 18 H -0.27 -13.03 6.53 99.48 0.65 -12.38 16 19 H -0.29 -14.28 7.11 99.48 0.71 -13.57 16 20 C -0.12 -2.51 4.99 31.98 0.16 -2.35 16 21 C 0.04 0.96 7.38 86.77 0.64 1.60 16 22 N -0.67 -16.48 7.39 -504.43 -3.73 -20.21 16 23 C 0.06 1.77 5.37 86.65 0.47 2.23 16 24 H 0.06 1.66 7.20 -2.39 -0.02 1.64 16 25 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 26 H 0.01 0.55 7.31 -2.39 -0.02 0.53 16 27 H 0.09 2.26 4.29 -2.39 -0.01 2.24 16 28 H 0.07 1.02 8.14 -2.38 -0.02 1.00 16 29 H 0.06 1.06 5.96 -2.39 -0.01 1.04 16 30 H 0.08 1.02 6.17 -2.39 -0.01 1.00 16 31 H 0.05 1.64 6.91 -2.39 -0.02 1.62 16 32 H 0.11 2.44 3.54 -2.39 -0.01 2.43 16 33 H 0.07 2.20 6.45 -2.39 -0.02 2.18 16 34 H 0.07 2.79 6.69 -2.39 -0.02 2.78 16 35 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 36 H 0.04 1.78 3.27 -2.39 -0.01 1.78 16 37 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 38 H 0.09 1.77 5.84 -2.39 -0.01 1.75 16 39 H 0.12 1.83 5.76 -2.39 -0.01 1.82 16 40 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 41 H 0.02 0.56 8.14 -2.39 -0.02 0.54 16 42 H 0.34 8.41 8.91 -89.70 -0.80 7.61 16 43 H 0.10 2.40 5.41 -2.38 -0.01 2.39 16 44 H 0.04 1.22 6.92 -2.39 -0.02 1.20 16 Total: -1.00 -71.71 312.52 1.41 -70.31 By element: Atomic # 1 Polarization: 21.44 SS G_CDS: 0.14 Total: 21.58 kcal Atomic # 6 Polarization: -11.92 SS G_CDS: 5.34 Total: -6.58 kcal Atomic # 7 Polarization: -97.75 SS G_CDS: -5.70 Total: -103.45 kcal Atomic # 8 Polarization: -29.13 SS G_CDS: -0.04 Total: -29.17 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 1.67 Total: 47.32 kcal Total: -71.71 1.41 -70.31 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232754864.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.179 kcal (2) G-P(sol) polarization free energy of solvation -71.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds