Wall clock time and date at job start Mon Mar 30 2020 04:52:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.47810 * 2 1 4 4 C 1.50698 * 109.47487 * 120.00322 * 2 1 3 5 5 H 1.08001 * 120.00291 * 119.99347 * 4 2 1 6 6 C 1.37875 * 120.00096 * 300.00140 * 4 2 1 7 7 N 1.31519 * 119.99605 * 359.97438 * 6 4 2 8 8 Si 1.86795 * 120.00357 * 179.97438 * 6 4 2 9 9 H 1.48507 * 109.47029 * 60.00032 * 8 6 4 10 10 H 1.48504 * 109.47426 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.47659 * 299.99970 * 8 6 4 12 12 N 1.46904 * 109.46991 * 240.00195 * 2 1 3 13 13 C 1.47904 * 111.00037 * 187.39701 * 12 2 1 14 14 C 1.53988 * 107.06025 * 214.15706 * 13 12 2 15 15 H 1.08998 * 110.31613 * 120.14196 * 14 13 12 16 16 C 1.52999 * 110.31119 * 242.21303 * 14 13 12 17 17 C 1.54784 * 105.20989 * 1.36562 * 14 13 12 18 18 H 1.08996 * 110.65714 * 263.44600 * 17 14 13 19 19 N 1.46906 * 110.87363 * 140.10808 * 17 14 13 20 20 C 1.47018 * 110.99782 * 186.09339 * 19 17 14 21 21 C 1.53102 * 109.25579 * 177.60617 * 20 19 17 22 22 O 1.43015 * 109.25799 * 56.84973 * 21 20 19 23 23 C 1.43017 * 113.73806 * 301.32796 * 22 21 20 24 24 C 1.47011 * 111.00147 * 62.45946 * 19 17 14 25 25 C 1.48529 * 110.99742 * 70.00258 * 12 2 1 26 26 H 1.09002 * 109.46940 * 59.99500 * 1 2 3 27 27 H 1.08997 * 109.47367 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.47044 * 299.99712 * 1 2 3 29 29 H 0.97008 * 119.99364 * 180.02562 * 7 6 4 30 30 H 1.08997 * 109.91924 * 333.51114 * 13 12 2 31 31 H 1.09004 * 109.91768 * 94.80252 * 13 12 2 32 32 H 1.09000 * 109.47284 * 58.53843 * 16 14 13 33 33 H 1.09004 * 109.47686 * 178.54249 * 16 14 13 34 34 H 1.09004 * 109.47069 * 298.54658 * 16 14 13 35 35 H 1.08994 * 109.50940 * 297.54480 * 20 19 17 36 36 H 1.09002 * 109.50300 * 57.67898 * 20 19 17 37 37 H 1.09003 * 109.50525 * 296.91688 * 21 20 19 38 38 H 1.09003 * 109.50236 * 176.78873 * 21 20 19 39 39 H 1.08990 * 109.50680 * 298.73571 * 23 22 21 40 40 H 1.09003 * 109.50451 * 178.60324 * 23 22 21 41 41 H 1.08999 * 109.50523 * 302.32578 * 24 19 17 42 42 H 1.09004 * 109.50376 * 62.41592 * 24 19 17 43 43 H 1.09001 * 110.67021 * 278.15178 * 25 12 2 44 44 H 1.08993 * 110.67096 * 41.11809 * 25 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1313 6 6 1.6993 -0.2395 2.4827 7 7 0.9436 0.8300 2.6034 8 14 2.3215 -1.1205 4.0078 9 1 3.8065 -1.1210 4.0080 10 1 1.8261 -0.4209 5.2204 11 1 1.8260 -2.5204 4.0077 12 7 2.0196 -0.6925 -1.1995 13 6 3.4873 -0.8681 -1.1481 14 6 4.0068 -0.7537 -2.5932 15 1 4.7147 0.0708 -2.6767 16 6 4.6665 -2.0646 -3.0258 17 6 2.7525 -0.4689 -3.4543 18 1 2.3694 -1.3906 -3.8922 19 7 3.0484 0.5208 -4.4989 20 6 1.8280 0.9011 -5.2251 21 6 2.1709 1.9750 -6.2611 22 8 3.1887 1.4795 -7.1350 23 6 4.3917 1.1001 -6.4609 24 6 4.0713 0.0174 -5.4270 25 6 1.7499 0.1061 -2.4224 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 0.7096 1.1616 3.4845 30 1 3.9332 -0.0885 -0.5305 31 1 3.7298 -1.8506 -0.7431 32 1 3.9446 -2.8776 -2.9480 33 1 5.0058 -1.9775 -4.0580 34 1 5.5191 -2.2729 -2.3793 35 1 1.4172 0.0267 -5.7296 36 1 1.0940 1.2949 -4.5221 37 1 2.5314 2.8692 -5.7526 38 1 1.2805 2.2190 -6.8406 39 1 4.8167 1.9689 -5.9584 40 1 5.1076 0.7114 -7.1852 41 1 4.9748 -0.2340 -4.8714 42 1 3.6966 -0.8717 -5.9343 43 1 0.7239 -0.0412 -2.7597 44 1 1.9464 1.1630 -2.2429 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000246615972.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:52:44 Heat of formation + Delta-G solvation = -54.371029 kcal Electronic energy + Delta-G solvation = -21953.870845 eV Core-core repulsion = 18905.216644 eV Total energy + Delta-G solvation = -3048.654201 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.08956 -39.56786 -36.87073 -35.18012 -33.68139 -32.19065 -30.89007 -29.77470 -27.78193 -26.55925 -25.88189 -24.95944 -22.84758 -21.43375 -21.23096 -20.82832 -18.22984 -17.93378 -17.02457 -16.97681 -16.39400 -16.02742 -15.88522 -15.82948 -15.44963 -14.87265 -14.59145 -14.45616 -14.24688 -13.75747 -13.58371 -13.16995 -13.13004 -12.85857 -12.81293 -12.62558 -12.50052 -12.40705 -12.32217 -12.15912 -11.95727 -11.70043 -11.50190 -11.40625 -11.29932 -10.89070 -10.60924 -10.54683 -9.39698 -9.07706 -8.12804 -6.25063 1.41433 1.43367 1.50918 2.40786 2.64449 2.96898 3.15462 3.49615 3.59332 3.74470 3.96987 4.03794 4.05090 4.21146 4.29321 4.32531 4.36611 4.52722 4.56121 4.63120 4.72387 4.74171 4.78405 4.82571 4.84445 4.94193 4.95008 4.98377 5.02727 5.07778 5.12743 5.19841 5.23460 5.42164 5.44333 5.69755 5.71394 5.97907 6.01261 6.18207 6.19525 6.34379 6.61743 6.88445 7.44206 8.93333 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.032075 B = 0.004618 C = 0.004223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.743446 B = 6061.611188 C = 6628.769670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.212 3.788 3 H -0.038 1.038 4 C -0.522 4.522 5 H 0.057 0.943 6 C 0.012 3.988 7 N -0.920 5.920 8 Si 0.960 3.040 9 H -0.271 1.271 10 H -0.283 1.283 11 H -0.271 1.271 12 N -0.521 5.521 13 C 0.061 3.939 14 C -0.088 4.088 15 H 0.080 0.920 16 C -0.135 4.135 17 C 0.099 3.901 18 H 0.054 0.946 19 N -0.538 5.538 20 C 0.016 3.984 21 C 0.067 3.933 22 O -0.402 6.402 23 C 0.063 3.937 24 C 0.017 3.983 25 C 0.049 3.951 26 H 0.024 0.976 27 H 0.030 0.970 28 H 0.060 0.940 29 H 0.262 0.738 30 H 0.018 0.982 31 H 0.065 0.935 32 H 0.051 0.949 33 H 0.072 0.928 34 H 0.064 0.936 35 H 0.041 0.959 36 H 0.083 0.917 37 H 0.057 0.943 38 H 0.116 0.884 39 H 0.058 0.942 40 H 0.119 0.881 41 H 0.098 0.902 42 H 0.041 0.959 43 H 0.070 0.930 44 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.290 -1.011 -17.210 18.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.104 3.896 3 H -0.020 1.020 4 C -0.560 4.560 5 H 0.075 0.925 6 C -0.187 4.187 7 N -0.560 5.560 8 Si 0.786 3.214 9 H -0.196 1.196 10 H -0.209 1.209 11 H -0.196 1.196 12 N -0.245 5.245 13 C -0.068 4.068 14 C -0.108 4.108 15 H 0.098 0.902 16 C -0.192 4.192 17 C -0.010 4.010 18 H 0.072 0.928 19 N -0.264 5.264 20 C -0.112 4.112 21 C -0.010 4.010 22 O -0.321 6.321 23 C -0.014 4.014 24 C -0.111 4.111 25 C -0.079 4.079 26 H 0.043 0.957 27 H 0.049 0.951 28 H 0.078 0.922 29 H 0.071 0.929 30 H 0.037 0.963 31 H 0.084 0.916 32 H 0.071 0.929 33 H 0.091 0.909 34 H 0.083 0.917 35 H 0.059 0.941 36 H 0.101 0.899 37 H 0.076 0.924 38 H 0.134 0.866 39 H 0.076 0.924 40 H 0.137 0.863 41 H 0.116 0.884 42 H 0.059 0.941 43 H 0.089 0.911 44 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 6.097 -0.991 -17.047 18.131 hybrid contribution -0.002 -0.038 1.337 1.338 sum 6.094 -1.029 -15.710 16.882 Atomic orbital electron populations 1.21559 0.97282 0.99091 0.99480 1.19208 0.92824 0.90100 0.87449 1.02021 1.21371 1.31280 1.12378 0.91006 0.92450 1.25724 0.95294 0.95728 1.01946 1.70021 1.37683 1.24136 1.24143 0.85578 0.78734 0.78705 0.78423 1.19634 1.20874 1.19638 1.64760 1.12375 1.44816 1.02561 1.22622 0.88391 1.00137 0.95602 1.22042 0.96304 0.99454 0.92986 0.90214 1.21855 1.00391 0.95229 1.01741 1.22474 0.94929 0.92635 0.90931 0.92781 1.62259 1.10324 1.40779 1.13029 1.22815 0.92519 0.99096 0.96760 1.22730 0.91989 0.94908 0.91342 1.87940 1.25314 1.84079 1.34755 1.22810 0.86854 0.96767 0.94929 1.22915 0.96669 0.97243 0.94243 1.23088 0.98724 0.95198 0.90937 0.95667 0.95074 0.92152 0.92896 0.96330 0.91619 0.92947 0.90906 0.91734 0.94068 0.89890 0.92432 0.86635 0.92369 0.86298 0.88404 0.94058 0.91142 0.95375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.87 9.03 71.98 0.65 -5.22 16 2 C 0.21 11.12 1.82 44.17 0.08 11.20 16 3 H -0.04 -2.22 7.89 -2.39 -0.02 -2.24 16 4 C -0.52 -29.24 7.87 25.60 0.20 -29.04 16 5 H 0.06 3.18 6.84 -2.91 -0.02 3.16 16 6 C 0.01 0.66 5.30 84.65 0.45 1.11 16 7 N -0.92 -53.72 11.32 21.45 0.24 -53.48 16 8 Si 0.96 44.02 29.54 68.60 2.03 46.05 16 9 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 10 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 11 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 12 N -0.52 -22.94 5.10 -862.26 -4.40 -27.34 16 13 C 0.06 2.43 5.14 86.44 0.44 2.87 16 14 C -0.09 -2.63 2.45 -9.85 -0.02 -2.66 16 15 H 0.08 2.35 7.77 -2.39 -0.02 2.33 16 16 C -0.13 -3.15 8.69 71.98 0.63 -2.53 16 17 C 0.10 2.93 2.32 46.19 0.11 3.04 16 18 H 0.05 1.61 7.87 -2.39 -0.02 1.59 16 19 N -0.54 -13.74 4.56 -862.54 -3.94 -17.68 16 20 C 0.02 0.38 5.45 86.31 0.47 0.85 16 21 C 0.07 1.35 7.01 72.02 0.50 1.85 16 22 O -0.40 -8.85 10.83 -148.98 -1.61 -10.47 16 23 C 0.06 1.15 7.01 72.02 0.50 1.66 16 24 C 0.02 0.35 4.88 86.31 0.42 0.77 16 25 C 0.05 1.82 4.14 86.65 0.36 2.18 16 26 H 0.02 1.12 7.26 -2.39 -0.02 1.10 16 27 H 0.03 1.54 8.14 -2.39 -0.02 1.52 16 28 H 0.06 3.35 6.07 -2.38 -0.01 3.33 16 29 H 0.26 14.54 8.31 -92.70 -0.77 13.77 16 30 H 0.02 0.82 7.59 -2.39 -0.02 0.81 16 31 H 0.07 2.62 7.26 -2.39 -0.02 2.61 16 32 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.07 1.36 6.28 -2.39 -0.01 1.34 16 34 H 0.06 1.41 8.14 -2.38 -0.02 1.39 16 35 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.08 2.02 6.96 -2.39 -0.02 2.00 16 37 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 38 H 0.12 1.83 8.14 -2.39 -0.02 1.81 16 39 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 40 H 0.12 1.58 8.14 -2.39 -0.02 1.56 16 41 H 0.10 1.82 5.70 -2.39 -0.01 1.81 16 42 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 43 H 0.07 2.52 7.56 -2.39 -0.02 2.51 16 44 H 0.03 1.14 7.85 -2.39 -0.02 1.12 16 Total: -1.00 -62.88 328.27 -1.94 -64.82 By element: Atomic # 1 Polarization: 11.06 SS G_CDS: 0.95 Total: 12.01 kcal Atomic # 6 Polarization: -18.71 SS G_CDS: 4.79 Total: -13.92 kcal Atomic # 7 Polarization: -90.40 SS G_CDS: -8.09 Total: -98.49 kcal Atomic # 8 Polarization: -8.85 SS G_CDS: -1.61 Total: -10.47 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.05 kcal Total: -62.88 -1.94 -64.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000246615972.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.451 kcal (2) G-P(sol) polarization free energy of solvation -62.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds