Wall clock time and date at job start Mon Mar 30 2020 05:51:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.47133 * 2 1 4 4 C 1.50699 * 109.47499 * 239.99894 * 2 1 3 5 5 H 1.07998 * 119.99977 * 240.00536 * 4 2 1 6 6 C 1.37882 * 120.00058 * 59.99888 * 4 2 1 7 7 N 1.31510 * 119.99719 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00024 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.46943 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47257 * 119.99813 * 8 6 4 11 11 H 1.48503 * 109.46988 * 240.00103 * 8 6 4 12 12 N 1.46496 * 109.46750 * 119.99588 * 2 1 3 13 13 C 1.46497 * 120.00031 * 60.00582 * 12 2 1 14 14 C 1.34784 * 120.00090 * 239.99877 * 12 2 1 15 15 O 1.21284 * 119.99758 * 0.02562 * 14 12 2 16 16 C 1.50697 * 119.99940 * 180.02562 * 14 12 2 17 17 C 1.52998 * 109.47059 * 180.02562 * 16 14 12 18 18 H 1.09006 * 109.47488 * 305.00292 * 17 16 14 19 19 C 1.52998 * 109.47034 * 64.99917 * 17 16 14 20 20 C 1.53006 * 109.46946 * 180.02562 * 19 17 16 21 21 C 1.52998 * 109.47064 * 299.99602 * 20 19 17 22 22 C 1.53008 * 109.46791 * 60.00410 * 21 20 19 23 23 C 1.52998 * 109.47070 * 299.99820 * 22 21 20 24 24 H 1.08995 * 109.47028 * 179.97438 * 23 22 21 25 25 N 1.46905 * 109.47084 * 299.99945 * 23 22 21 26 26 H 1.09005 * 109.46708 * 60.00618 * 1 2 3 27 27 H 1.08994 * 109.46870 * 180.02562 * 1 2 3 28 28 H 1.08992 * 109.47024 * 300.00802 * 1 2 3 29 29 H 0.97006 * 120.00000 * 179.97438 * 7 6 4 30 30 H 1.09000 * 109.47302 * 269.99373 * 13 12 2 31 31 H 1.08995 * 109.47388 * 29.99865 * 13 12 2 32 32 H 1.08999 * 109.47380 * 149.99806 * 13 12 2 33 33 H 1.08997 * 109.47101 * 60.00233 * 16 14 12 34 34 H 1.08993 * 109.47105 * 300.00005 * 16 14 12 35 35 H 1.09004 * 109.47281 * 60.00319 * 19 17 16 36 36 H 1.09001 * 109.47245 * 299.99776 * 19 17 16 37 37 H 1.09004 * 109.46991 * 180.02562 * 20 19 17 38 38 H 1.08999 * 109.47342 * 60.00299 * 20 19 17 39 39 H 1.08999 * 109.47610 * 300.00533 * 21 20 19 40 40 H 1.09002 * 109.47111 * 180.02562 * 21 20 19 41 41 H 1.09001 * 109.47080 * 179.97438 * 22 21 20 42 42 H 1.08999 * 109.46943 * 59.99715 * 22 21 20 43 43 H 1.00901 * 110.99869 * 300.00384 * 25 23 22 44 44 H 1.00896 * 110.99543 * 63.95506 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0325 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6994 -0.2394 -2.4827 7 7 0.9429 0.8295 -2.6034 8 14 2.3216 -1.1204 -4.0079 9 1 3.1467 -2.2870 -3.6036 10 1 1.1664 -1.5868 -4.8160 11 1 3.1469 -0.1874 -4.8164 12 7 2.0183 -0.6905 1.1962 13 6 1.6644 -2.0931 1.4281 14 6 2.7932 -0.0355 2.0834 15 8 3.0858 1.1258 1.8916 16 6 3.2958 -0.7460 3.3136 17 6 4.1452 0.2159 4.1468 18 1 4.9416 0.6277 3.5268 19 6 3.2646 1.3534 4.6678 20 6 4.1142 2.3157 5.5005 21 6 4.7268 1.5625 6.6830 22 6 5.6074 0.4249 6.1619 23 6 4.7579 -0.5373 5.3292 24 1 5.3854 -1.3474 4.9577 25 7 3.6850 -1.0922 6.1653 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 0.7088 1.1612 -3.4845 30 1 0.7376 -2.1443 1.9994 31 1 1.5296 -2.5968 0.4710 32 1 2.4628 -2.5817 1.9865 33 1 3.9016 -1.6021 3.0167 34 1 2.4483 -1.0888 3.9070 35 1 2.4682 0.9417 5.2878 36 1 2.8285 1.8903 3.8254 37 1 3.4867 3.1259 5.8720 38 1 4.9102 2.7274 4.8801 39 1 3.9307 1.1507 7.3033 40 1 5.3316 2.2481 7.2764 41 1 6.0442 -0.1115 7.0043 42 1 6.4035 0.8366 5.5416 43 1 4.0643 -1.5948 6.9537 44 1 3.0519 -0.3677 6.4690 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000310172400.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:51:35 Heat of formation + Delta-G solvation = -59.023685 kcal Electronic energy + Delta-G solvation = -21750.919917 eV Core-core repulsion = 18702.063962 eV Total energy + Delta-G solvation = -3048.855955 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.84490 -38.36034 -35.24730 -33.01096 -32.72428 -32.16773 -29.56845 -28.75648 -26.43313 -25.81000 -25.15708 -22.51650 -22.02265 -20.51760 -18.87076 -18.04611 -16.69961 -16.38569 -15.80909 -15.28032 -15.12748 -14.66416 -14.43822 -14.19699 -14.09582 -13.42291 -12.94328 -12.73526 -12.34770 -12.17943 -12.13938 -11.90069 -11.72426 -11.57030 -11.38494 -11.35252 -11.00606 -10.83192 -10.75778 -10.58211 -10.35272 -10.22566 -10.17376 -10.12195 -9.92190 -9.10005 -8.73842 -8.64089 -8.36828 -7.46097 -6.03218 -4.10760 3.28067 3.35855 3.38911 3.56581 4.08555 4.43300 4.53311 4.73046 4.74632 4.81007 5.15639 5.20766 5.27818 5.39037 5.45529 5.51663 5.58671 5.65138 5.69641 5.83406 5.91817 5.97196 5.99752 6.02777 6.15275 6.26070 6.27164 6.36844 6.46997 6.63418 6.72823 6.82169 6.90735 7.12566 7.14074 7.39859 7.53065 7.61593 7.78342 8.08494 8.26741 8.65943 8.89763 9.20753 9.56036 11.02023 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.032897 B = 0.004311 C = 0.004235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.944515 B = 6493.973204 C = 6610.356790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.256 3.744 3 H 0.062 0.938 4 C -0.523 4.523 5 H 0.059 0.941 6 C 0.064 3.936 7 N -0.888 5.888 8 Si 0.897 3.103 9 H -0.274 1.274 10 H -0.284 1.284 11 H -0.284 1.284 12 N -0.595 5.595 13 C 0.085 3.915 14 C 0.500 3.500 15 O -0.556 6.556 16 C -0.124 4.124 17 C -0.060 4.060 18 H 0.078 0.922 19 C -0.122 4.122 20 C -0.119 4.119 21 C -0.120 4.120 22 C -0.153 4.153 23 C 0.094 3.906 24 H 0.078 0.922 25 N -0.841 5.841 26 H 0.092 0.908 27 H 0.028 0.972 28 H 0.010 0.990 29 H 0.262 0.738 30 H 0.041 0.959 31 H 0.077 0.923 32 H 0.054 0.946 33 H 0.082 0.918 34 H 0.093 0.907 35 H 0.054 0.946 36 H 0.089 0.911 37 H 0.058 0.942 38 H 0.062 0.938 39 H 0.056 0.944 40 H 0.057 0.943 41 H 0.057 0.943 42 H 0.067 0.933 43 H 0.334 0.666 44 H 0.340 0.660 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.104 -3.464 17.357 18.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.156 3.844 3 H 0.080 0.920 4 C -0.562 4.562 5 H 0.077 0.923 6 C -0.139 4.139 7 N -0.527 5.527 8 Si 0.725 3.275 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.210 1.210 12 N -0.326 5.326 13 C -0.059 4.059 14 C 0.288 3.712 15 O -0.435 6.435 16 C -0.165 4.165 17 C -0.079 4.079 18 H 0.096 0.904 19 C -0.159 4.159 20 C -0.156 4.156 21 C -0.158 4.158 22 C -0.193 4.193 23 C -0.017 4.017 24 H 0.096 0.904 25 N -0.372 5.372 26 H 0.110 0.890 27 H 0.047 0.953 28 H 0.029 0.971 29 H 0.072 0.928 30 H 0.059 0.941 31 H 0.096 0.904 32 H 0.073 0.927 33 H 0.100 0.900 34 H 0.112 0.888 35 H 0.073 0.927 36 H 0.108 0.892 37 H 0.077 0.923 38 H 0.081 0.919 39 H 0.074 0.926 40 H 0.076 0.924 41 H 0.075 0.925 42 H 0.086 0.914 43 H 0.146 0.854 44 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 4.940 -3.174 16.431 17.448 hybrid contribution 0.682 -0.008 -0.134 0.695 sum 5.622 -3.182 16.296 17.530 Atomic orbital electron populations 1.22069 0.98371 0.99289 1.00641 1.18897 0.90768 0.94537 0.80185 0.92001 1.21383 1.31540 1.12892 0.90390 0.92269 1.24898 0.95002 0.95006 0.98945 1.69896 1.36512 1.22712 1.23531 0.86458 0.78579 0.79601 0.82853 1.19831 1.20966 1.20960 1.48238 1.49199 1.11584 1.23616 1.21569 0.98818 0.83443 1.02060 1.20613 0.78947 0.87220 0.84453 1.90588 1.58728 1.17298 1.76934 1.21607 1.01204 0.98800 0.94840 1.20875 0.98036 0.94617 0.94409 0.90378 1.21717 0.97508 0.96400 1.00290 1.21539 0.99623 0.97999 0.96488 1.21545 0.98890 0.97385 0.97945 1.22328 0.99179 0.97783 0.99984 1.21482 0.91551 0.95283 0.93412 0.90384 1.58986 1.19897 1.32083 1.26191 0.88984 0.95261 0.97124 0.92823 0.94065 0.90414 0.92711 0.90000 0.88827 0.92710 0.89238 0.92336 0.91880 0.92574 0.92399 0.92466 0.91436 0.85358 0.84464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.56 8.97 37.16 0.33 -3.23 16 2 C 0.26 6.69 2.64 -69.08 -0.18 6.51 16 3 H 0.06 1.87 6.90 -51.93 -0.36 1.51 16 4 C -0.52 -14.38 7.99 -34.44 -0.28 -14.65 16 5 H 0.06 1.61 7.33 -52.49 -0.38 1.22 16 6 C 0.06 1.76 5.30 -17.82 -0.09 1.66 16 7 N -0.89 -25.48 11.32 55.43 0.63 -24.85 16 8 Si 0.90 21.28 29.54 -169.99 -5.02 16.26 16 9 H -0.27 -6.39 7.11 56.52 0.40 -5.98 16 10 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 12 N -0.60 -12.97 2.75 -175.27 -0.48 -13.45 16 13 C 0.09 1.49 9.24 59.85 0.55 2.04 16 14 C 0.50 10.37 7.39 -10.98 -0.08 10.29 16 15 O -0.56 -13.44 13.29 5.55 0.07 -13.37 16 16 C -0.12 -1.90 3.50 -27.89 -0.10 -2.00 16 17 C -0.06 -0.83 1.66 -90.62 -0.15 -0.98 16 18 H 0.08 1.22 7.96 -51.93 -0.41 0.81 16 19 C -0.12 -1.68 4.68 -26.73 -0.13 -1.81 16 20 C -0.12 -1.38 5.92 -26.73 -0.16 -1.54 16 21 C -0.12 -1.13 5.66 -26.73 -0.15 -1.28 16 22 C -0.15 -1.44 5.61 -26.73 -0.15 -1.59 16 23 C 0.09 1.00 3.14 -67.71 -0.21 0.79 16 24 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 25 N -0.84 -7.96 8.45 -4.67 -0.04 -8.00 16 26 H 0.09 2.47 6.07 -51.93 -0.32 2.15 16 27 H 0.03 0.66 7.67 -51.93 -0.40 0.26 16 28 H 0.01 0.23 8.14 -51.93 -0.42 -0.20 16 29 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 30 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.08 1.44 7.02 -51.93 -0.36 1.08 16 32 H 0.05 0.80 6.44 -51.93 -0.33 0.46 16 33 H 0.08 1.17 7.40 -51.93 -0.38 0.79 16 34 H 0.09 1.35 7.73 -51.93 -0.40 0.95 16 35 H 0.05 0.70 6.57 -51.93 -0.34 0.36 16 36 H 0.09 1.58 5.95 -51.93 -0.31 1.27 16 37 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.06 0.49 6.76 -51.93 -0.35 0.13 16 40 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 42 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.33 2.56 9.04 -39.29 -0.36 2.20 16 44 H 0.34 3.21 5.44 -39.29 -0.21 3.00 16 LS Contribution 330.10 15.07 4.97 4.97 Total: -1.00 -30.33 330.10 -8.10 -38.43 By element: Atomic # 1 Polarization: 13.24 SS G_CDS: -7.44 Total: 5.80 kcal Atomic # 6 Polarization: -4.99 SS G_CDS: -0.79 Total: -5.79 kcal Atomic # 7 Polarization: -46.41 SS G_CDS: 0.11 Total: -46.31 kcal Atomic # 8 Polarization: -13.44 SS G_CDS: 0.07 Total: -13.37 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -30.33 -8.10 -38.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310172400.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.597 kcal (2) G-P(sol) polarization free energy of solvation -30.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds