Wall clock time and date at job start Mon Mar 30 2020 05:51:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.47133 * 2 1 4 4 C 1.50699 * 109.47499 * 239.99894 * 2 1 3 5 5 H 1.07998 * 119.99977 * 240.00536 * 4 2 1 6 6 C 1.37882 * 120.00058 * 59.99888 * 4 2 1 7 7 N 1.31510 * 119.99719 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00024 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.46943 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47257 * 119.99813 * 8 6 4 11 11 H 1.48503 * 109.46988 * 240.00103 * 8 6 4 12 12 N 1.46496 * 109.46750 * 119.99588 * 2 1 3 13 13 C 1.46497 * 120.00031 * 60.00582 * 12 2 1 14 14 C 1.34784 * 120.00090 * 239.99877 * 12 2 1 15 15 O 1.21284 * 119.99758 * 0.02562 * 14 12 2 16 16 C 1.50697 * 119.99940 * 180.02562 * 14 12 2 17 17 C 1.52998 * 109.47059 * 180.02562 * 16 14 12 18 18 H 1.09006 * 109.47488 * 305.00292 * 17 16 14 19 19 C 1.52998 * 109.47034 * 64.99917 * 17 16 14 20 20 C 1.53006 * 109.46946 * 180.02562 * 19 17 16 21 21 C 1.52998 * 109.47064 * 299.99602 * 20 19 17 22 22 C 1.53008 * 109.46791 * 60.00410 * 21 20 19 23 23 C 1.52998 * 109.47070 * 299.99820 * 22 21 20 24 24 H 1.08995 * 109.47028 * 179.97438 * 23 22 21 25 25 N 1.46905 * 109.47084 * 299.99945 * 23 22 21 26 26 H 1.09005 * 109.46708 * 60.00618 * 1 2 3 27 27 H 1.08994 * 109.46870 * 180.02562 * 1 2 3 28 28 H 1.08992 * 109.47024 * 300.00802 * 1 2 3 29 29 H 0.97006 * 120.00000 * 179.97438 * 7 6 4 30 30 H 1.09000 * 109.47302 * 269.99373 * 13 12 2 31 31 H 1.08995 * 109.47388 * 29.99865 * 13 12 2 32 32 H 1.08999 * 109.47380 * 149.99806 * 13 12 2 33 33 H 1.08997 * 109.47101 * 60.00233 * 16 14 12 34 34 H 1.08993 * 109.47105 * 300.00005 * 16 14 12 35 35 H 1.09004 * 109.47281 * 60.00319 * 19 17 16 36 36 H 1.09001 * 109.47245 * 299.99776 * 19 17 16 37 37 H 1.09004 * 109.46991 * 180.02562 * 20 19 17 38 38 H 1.08999 * 109.47342 * 60.00299 * 20 19 17 39 39 H 1.08999 * 109.47610 * 300.00533 * 21 20 19 40 40 H 1.09002 * 109.47111 * 180.02562 * 21 20 19 41 41 H 1.09001 * 109.47080 * 179.97438 * 22 21 20 42 42 H 1.08999 * 109.46943 * 59.99715 * 22 21 20 43 43 H 1.00901 * 110.99869 * 300.00384 * 25 23 22 44 44 H 1.00896 * 110.99543 * 63.95506 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0325 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6994 -0.2394 -2.4827 7 7 0.9429 0.8295 -2.6034 8 14 2.3216 -1.1204 -4.0079 9 1 3.1467 -2.2870 -3.6036 10 1 1.1664 -1.5868 -4.8160 11 1 3.1469 -0.1874 -4.8164 12 7 2.0183 -0.6905 1.1962 13 6 1.6644 -2.0931 1.4281 14 6 2.7932 -0.0355 2.0834 15 8 3.0858 1.1258 1.8916 16 6 3.2958 -0.7460 3.3136 17 6 4.1452 0.2159 4.1468 18 1 4.9416 0.6277 3.5268 19 6 3.2646 1.3534 4.6678 20 6 4.1142 2.3157 5.5005 21 6 4.7268 1.5625 6.6830 22 6 5.6074 0.4249 6.1619 23 6 4.7579 -0.5373 5.3292 24 1 5.3854 -1.3474 4.9577 25 7 3.6850 -1.0922 6.1653 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 0.7088 1.1612 -3.4845 30 1 0.7376 -2.1443 1.9994 31 1 1.5296 -2.5968 0.4710 32 1 2.4628 -2.5817 1.9865 33 1 3.9016 -1.6021 3.0167 34 1 2.4483 -1.0888 3.9070 35 1 2.4682 0.9417 5.2878 36 1 2.8285 1.8903 3.8254 37 1 3.4867 3.1259 5.8720 38 1 4.9102 2.7274 4.8801 39 1 3.9307 1.1507 7.3033 40 1 5.3316 2.2481 7.2764 41 1 6.0442 -0.1115 7.0043 42 1 6.4035 0.8366 5.5416 43 1 4.0643 -1.5948 6.9537 44 1 3.0519 -0.3677 6.4690 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000310172400.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:51:35 Heat of formation + Delta-G solvation = -78.724109 kcal Electronic energy + Delta-G solvation = -21751.774192 eV Core-core repulsion = 18702.063962 eV Total energy + Delta-G solvation = -3049.710230 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.14566 -39.68783 -37.07098 -34.81142 -33.75890 -33.36485 -31.36891 -29.72309 -27.69950 -27.36013 -27.18638 -23.65264 -23.19863 -22.02725 -19.85301 -19.69450 -18.49330 -17.84834 -17.19783 -16.91884 -16.43701 -16.13975 -15.58509 -15.39837 -15.06991 -14.73954 -14.43596 -14.27258 -13.93928 -13.56951 -13.40324 -13.18778 -13.03442 -12.92293 -12.77744 -12.74275 -12.63259 -12.54244 -12.36240 -12.17804 -12.09659 -11.80701 -11.36490 -11.25871 -11.13939 -10.91500 -10.57577 -10.27277 -9.42755 -9.23828 -8.14115 -6.30734 1.40235 1.41733 1.53367 1.93561 2.35961 2.57326 3.13474 3.68487 3.73724 3.84815 3.95558 4.04108 4.22998 4.37130 4.44877 4.49618 4.54331 4.63219 4.71133 4.76547 4.77472 4.81667 4.87071 4.90804 4.97087 5.06787 5.07447 5.11542 5.17168 5.25847 5.28876 5.38485 5.48532 5.56858 5.60240 5.64243 5.71841 6.07497 6.18606 6.37983 6.76245 6.78295 6.93612 7.35370 7.58808 8.90340 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.032897 B = 0.004311 C = 0.004235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.944515 B = 6493.973204 C = 6610.356790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.260 3.740 3 H 0.006 0.994 4 C -0.537 4.537 5 H 0.060 0.940 6 C 0.013 3.987 7 N -0.919 5.919 8 Si 0.966 3.034 9 H -0.264 1.264 10 H -0.274 1.274 11 H -0.285 1.285 12 N -0.605 5.605 13 C 0.083 3.917 14 C 0.488 3.512 15 O -0.600 6.600 16 C -0.107 4.107 17 C -0.059 4.059 18 H 0.050 0.950 19 C -0.118 4.118 20 C -0.118 4.118 21 C -0.114 4.114 22 C -0.150 4.150 23 C 0.105 3.895 24 H 0.084 0.916 25 N -0.842 5.842 26 H 0.066 0.934 27 H 0.045 0.955 28 H 0.017 0.983 29 H 0.264 0.736 30 H 0.062 0.938 31 H 0.065 0.935 32 H 0.089 0.911 33 H 0.100 0.900 34 H 0.112 0.888 35 H 0.068 0.932 36 H 0.042 0.958 37 H 0.062 0.938 38 H 0.046 0.954 39 H 0.071 0.929 40 H 0.070 0.930 41 H 0.080 0.920 42 H 0.058 0.942 43 H 0.349 0.651 44 H 0.342 0.658 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.755 -5.925 19.282 20.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.158 3.842 3 H 0.024 0.976 4 C -0.575 4.575 5 H 0.078 0.922 6 C -0.186 4.186 7 N -0.558 5.558 8 Si 0.791 3.209 9 H -0.188 1.188 10 H -0.199 1.199 11 H -0.212 1.212 12 N -0.336 5.336 13 C -0.060 4.060 14 C 0.278 3.722 15 O -0.483 6.483 16 C -0.147 4.147 17 C -0.078 4.078 18 H 0.069 0.931 19 C -0.155 4.155 20 C -0.155 4.155 21 C -0.151 4.151 22 C -0.190 4.190 23 C -0.007 4.007 24 H 0.102 0.898 25 N -0.374 5.374 26 H 0.084 0.916 27 H 0.064 0.936 28 H 0.036 0.964 29 H 0.073 0.927 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.107 0.893 33 H 0.119 0.881 34 H 0.130 0.870 35 H 0.087 0.913 36 H 0.061 0.939 37 H 0.081 0.919 38 H 0.065 0.935 39 H 0.089 0.911 40 H 0.088 0.912 41 H 0.099 0.901 42 H 0.076 0.924 43 H 0.163 0.837 44 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 5.590 -5.675 18.391 20.042 hybrid contribution 0.463 0.818 -0.720 1.184 sum 6.054 -4.857 17.671 19.301 Atomic orbital electron populations 1.21849 0.97387 0.99934 0.99698 1.18485 0.91472 0.92179 0.82065 0.97578 1.21629 1.31702 1.12972 0.91240 0.92156 1.25762 0.95103 0.95669 1.02085 1.70040 1.37436 1.24013 1.24295 0.85394 0.78222 0.78488 0.78826 1.18841 1.19922 1.21162 1.48281 1.49446 1.13328 1.22535 1.21792 1.01151 0.80765 1.02273 1.21669 0.78018 0.86938 0.85572 1.90576 1.60075 1.19591 1.78077 1.21584 1.02039 0.98859 0.92214 1.20848 0.97013 0.94638 0.95336 0.93118 1.21608 0.98194 0.96615 0.99105 1.21515 0.98979 0.97993 0.97061 1.21508 0.99369 0.97392 0.96849 1.22309 0.98697 0.97596 1.00375 1.21304 0.91752 0.95259 0.92373 0.89791 1.58927 1.19500 1.32076 1.26894 0.91554 0.93593 0.96381 0.92702 0.91952 0.91613 0.89273 0.88148 0.87013 0.91305 0.93889 0.91923 0.93538 0.91080 0.91169 0.90142 0.92359 0.83666 0.84322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.53 8.97 71.98 0.65 -5.88 16 2 C 0.26 14.05 2.64 44.25 0.12 14.17 16 3 H 0.01 0.40 6.90 -2.39 -0.02 0.39 16 4 C -0.54 -30.01 7.99 25.60 0.20 -29.80 16 5 H 0.06 3.28 7.33 -2.91 -0.02 3.25 16 6 C 0.01 0.73 5.30 84.66 0.45 1.18 16 7 N -0.92 -54.21 11.32 21.45 0.24 -53.96 16 8 Si 0.97 43.87 29.54 68.60 2.03 45.90 16 9 H -0.26 -11.51 7.11 99.48 0.71 -10.80 16 10 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 11 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 12 N -0.61 -26.54 2.75 -826.80 -2.28 -28.82 16 13 C 0.08 2.72 9.24 127.77 1.18 3.90 16 14 C 0.49 20.64 7.39 87.65 0.65 21.29 16 15 O -0.60 -30.87 13.29 -3.04 -0.04 -30.91 16 16 C -0.11 -3.13 3.50 29.85 0.10 -3.03 16 17 C -0.06 -1.58 1.66 -10.80 -0.02 -1.60 16 18 H 0.05 1.64 7.96 -2.38 -0.02 1.62 16 19 C -0.12 -3.27 4.68 30.60 0.14 -3.13 16 20 C -0.12 -2.71 5.92 30.60 0.18 -2.52 16 21 C -0.11 -1.85 5.66 30.60 0.17 -1.68 16 22 C -0.15 -2.41 5.61 30.60 0.17 -2.24 16 23 C 0.10 1.94 3.14 44.91 0.14 2.08 16 24 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 25 N -0.84 -12.85 8.45 -168.68 -1.43 -14.28 16 26 H 0.07 3.68 6.07 -2.38 -0.01 3.66 16 27 H 0.05 2.09 7.67 -2.39 -0.02 2.07 16 28 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.26 14.68 8.31 -92.70 -0.77 13.91 16 30 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.07 2.33 7.02 -2.39 -0.02 2.31 16 32 H 0.09 2.30 6.44 -2.39 -0.02 2.29 16 33 H 0.10 2.59 7.40 -2.39 -0.02 2.57 16 34 H 0.11 2.90 7.73 -2.39 -0.02 2.88 16 35 H 0.07 1.68 6.57 -2.38 -0.02 1.66 16 36 H 0.04 1.61 5.95 -2.39 -0.01 1.59 16 37 H 0.06 1.36 8.14 -2.38 -0.02 1.34 16 38 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.07 0.98 6.76 -2.39 -0.02 0.96 16 40 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 41 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 42 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 43 H 0.35 3.84 9.04 -89.69 -0.81 3.03 16 44 H 0.34 5.24 5.44 -89.70 -0.49 4.75 16 Total: -1.00 -69.49 330.10 2.36 -67.13 By element: Atomic # 1 Polarization: 22.52 SS G_CDS: -0.31 Total: 22.21 kcal Atomic # 6 Polarization: -11.40 SS G_CDS: 4.14 Total: -7.26 kcal Atomic # 7 Polarization: -93.60 SS G_CDS: -3.46 Total: -97.06 kcal Atomic # 8 Polarization: -30.87 SS G_CDS: -0.04 Total: -30.91 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.90 kcal Total: -69.49 2.36 -67.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310172400.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.596 kcal (2) G-P(sol) polarization free energy of solvation -69.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds