Wall clock time and date at job start Mon Mar 30 2020 04:40:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08997 * 109.51949 * 2 1 4 4 C 1.53113 * 109.57376 * 239.83833 * 2 1 3 5 5 C 1.53042 * 109.27773 * 182.40787 * 4 2 1 6 6 N 1.46826 * 109.51153 * 59.18379 * 5 4 2 7 7 C 1.46847 * 111.21279 * 298.24437 * 6 5 4 8 8 H 1.08989 * 109.46402 * 181.76042 * 7 6 5 9 9 C 1.50693 * 109.46337 * 301.74835 * 7 6 5 10 10 O 1.21280 * 120.00319 * 355.78420 * 9 7 6 11 11 N 1.34782 * 120.00172 * 175.79609 * 9 7 6 12 12 C 1.46497 * 120.00192 * 179.97438 * 11 9 7 13 13 C 1.53005 * 109.47012 * 180.02562 * 12 11 9 14 14 C 1.52999 * 109.47110 * 60.00041 * 13 12 11 15 15 C 1.52999 * 109.46815 * 299.99964 * 13 12 11 16 16 C 1.50694 * 109.47235 * 179.97438 * 13 12 11 17 17 H 1.08004 * 120.00248 * 359.44935 * 16 13 12 18 18 C 1.37880 * 120.00449 * 179.44800 * 16 13 12 19 19 N 1.31510 * 119.99388 * 1.57979 * 18 16 13 20 20 Si 1.86799 * 120.00304 * 181.58135 * 18 16 13 21 21 H 1.48504 * 109.47035 * 270.00120 * 20 18 16 22 22 H 1.48501 * 109.47056 * 29.99750 * 20 18 16 23 23 H 1.48498 * 109.47130 * 149.99978 * 20 18 16 24 24 C 1.53039 * 109.50804 * 61.75493 * 7 6 5 25 25 H 1.08995 * 109.46909 * 299.87305 * 1 2 3 26 26 H 1.09003 * 109.46958 * 59.87270 * 1 2 3 27 27 H 1.09001 * 109.47163 * 179.87458 * 1 2 3 28 28 H 1.08993 * 109.51007 * 302.35262 * 4 2 1 29 29 H 1.08999 * 109.50183 * 62.47358 * 4 2 1 30 30 H 1.08997 * 109.46197 * 179.19535 * 5 4 2 31 31 H 1.08997 * 109.46413 * 299.17636 * 5 4 2 32 32 H 1.00910 * 110.97919 * 174.15502 * 6 5 4 33 33 H 0.97007 * 119.99557 * 359.97438 * 11 9 7 34 34 H 1.08995 * 109.47301 * 59.99642 * 12 11 9 35 35 H 1.09005 * 109.46940 * 299.99445 * 12 11 9 36 36 H 1.09004 * 109.47029 * 172.94273 * 14 13 12 37 37 H 1.09006 * 109.47015 * 292.93487 * 14 13 12 38 38 H 1.08989 * 109.47533 * 52.93436 * 14 13 12 39 39 H 1.08994 * 109.47100 * 307.06617 * 15 13 12 40 40 H 1.09001 * 109.47297 * 67.06744 * 15 13 12 41 41 H 1.09002 * 109.46856 * 187.06982 * 15 13 12 42 42 H 0.97002 * 120.00435 * 357.68559 * 19 18 16 43 43 H 1.08995 * 109.50953 * 60.76383 * 24 7 6 44 44 H 1.08998 * 109.50214 * 180.88594 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0430 -0.7248 -1.2473 5 6 3.5722 -0.7736 -1.2104 6 7 4.0113 -1.4766 0.0015 7 6 3.5709 -0.7731 1.2130 8 1 3.9378 -1.3010 2.0931 9 6 4.1179 0.6310 1.2051 10 8 4.8687 0.9844 0.3206 11 7 3.7730 1.4941 2.1811 12 6 4.3052 2.8590 2.1737 13 6 3.7621 3.6247 3.3819 14 6 4.1907 2.9171 4.6689 15 6 2.2345 3.6725 3.3107 16 6 4.3100 5.0285 3.3748 17 1 4.9858 5.3404 2.5922 18 6 3.9487 5.9147 4.3673 19 7 3.1504 5.5257 5.3373 20 14 4.5928 7.6678 4.3340 21 1 5.8743 7.7386 5.0811 22 1 4.8166 8.0863 2.9268 23 1 3.5998 8.5722 4.9675 24 6 2.0417 -0.7244 1.2483 25 1 -0.3633 0.5118 0.8911 26 1 -0.3633 0.5158 -0.8889 27 1 -0.3633 -1.0277 -0.0022 28 1 1.6470 -1.7401 -1.2671 29 1 1.7175 -0.1892 -2.1391 30 1 3.9401 -1.3016 -2.0901 31 1 3.9679 0.2420 -1.2045 32 1 5.0122 -1.6055 0.0019 33 1 3.1723 1.2115 2.8884 34 1 4.0003 3.3629 1.2566 35 1 5.3935 2.8249 2.2250 36 1 3.9128 3.5268 5.5287 37 1 3.6937 1.9491 4.7342 38 1 5.2708 2.7711 4.6609 39 1 1.9281 4.0620 2.3399 40 1 1.8329 2.6677 3.4422 41 1 1.8542 4.3219 4.0992 42 1 2.7890 4.6256 5.3366 43 1 1.6455 -1.7397 1.2678 44 1 1.7152 -0.1885 2.1395 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000316022277.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:40:05 Heat of formation + Delta-G solvation = -50.794429 kcal Electronic energy + Delta-G solvation = -22102.110180 eV Core-core repulsion = 19053.611072 eV Total energy + Delta-G solvation = -3048.499108 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.45727 -37.78098 -36.61008 -33.91782 -33.29321 -31.41762 -30.17881 -27.46917 -26.09783 -26.08342 -24.76731 -23.34042 -22.23714 -20.79345 -19.35164 -18.93681 -17.19104 -16.80241 -16.13482 -15.45898 -15.21475 -14.46135 -14.13113 -13.93243 -13.86007 -13.76506 -13.03896 -12.91568 -12.75169 -12.60122 -12.34575 -12.16729 -11.82743 -11.60576 -11.43060 -11.27274 -10.96028 -10.76094 -10.66552 -10.63858 -10.42589 -10.29215 -10.13837 -9.96236 -9.92445 -9.57429 -8.61148 -8.47931 -8.35152 -8.18330 -6.29515 -4.14707 2.89481 3.40839 3.43810 3.59396 3.66613 4.15196 4.48599 4.66866 4.71421 4.79744 5.04333 5.17922 5.29623 5.30891 5.50602 5.58328 5.59381 5.61370 5.74042 5.85317 5.96184 6.02235 6.07344 6.11755 6.12790 6.16332 6.21373 6.40029 6.51781 6.57450 6.65997 6.74402 6.85052 6.89516 7.03294 7.05768 7.28264 7.45850 7.61821 7.93515 8.15095 8.35884 8.56242 8.80173 9.56067 10.96469 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.029447 B = 0.004731 C = 0.004543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 950.629652 B = 5916.409108 C = 6161.713426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.098 4.098 3 H 0.069 0.931 4 C -0.109 4.109 5 C 0.034 3.966 6 N -0.660 5.660 7 C 0.066 3.934 8 H 0.105 0.895 9 C 0.478 3.522 10 O -0.554 6.554 11 N -0.714 5.714 12 C 0.139 3.861 13 C 0.041 3.959 14 C -0.145 4.145 15 C -0.144 4.144 16 C -0.586 4.586 17 H 0.051 0.949 18 C 0.026 3.974 19 N -0.918 5.918 20 Si 1.067 2.933 21 H -0.288 1.288 22 H -0.289 1.289 23 H -0.285 1.285 24 C -0.101 4.101 25 H 0.056 0.944 26 H 0.053 0.947 27 H 0.054 0.946 28 H 0.066 0.934 29 H 0.062 0.938 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.346 0.654 33 H 0.396 0.604 34 H 0.054 0.946 35 H 0.054 0.946 36 H 0.073 0.927 37 H 0.015 0.985 38 H 0.036 0.964 39 H 0.036 0.964 40 H 0.015 0.985 41 H 0.072 0.928 42 H 0.281 0.719 43 H 0.079 0.921 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.772 -13.106 -7.477 15.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.117 4.117 3 H 0.088 0.912 4 C -0.147 4.147 5 C -0.095 4.095 6 N -0.289 5.289 7 C -0.048 4.048 8 H 0.123 0.877 9 C 0.262 3.738 10 O -0.434 6.434 11 N -0.365 5.365 12 C 0.016 3.984 13 C 0.040 3.960 14 C -0.203 4.203 15 C -0.202 4.202 16 C -0.624 4.624 17 H 0.069 0.931 18 C -0.178 4.178 19 N -0.558 5.558 20 Si 0.896 3.104 21 H -0.215 1.215 22 H -0.215 1.215 23 H -0.210 1.210 24 C -0.139 4.139 25 H 0.075 0.925 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.084 0.916 29 H 0.081 0.919 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.164 0.836 33 H 0.231 0.769 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.091 0.909 37 H 0.034 0.966 38 H 0.055 0.945 39 H 0.055 0.945 40 H 0.034 0.966 41 H 0.090 0.910 42 H 0.097 0.903 43 H 0.098 0.902 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -3.795 -11.848 -7.284 14.416 hybrid contribution 0.436 -0.764 -0.483 1.003 sum -3.359 -12.612 -7.766 15.187 Atomic orbital electron populations 1.21786 0.94879 1.01590 1.01856 1.21203 0.95825 0.99690 0.94951 0.91234 1.21632 0.95294 1.00556 0.97230 1.22240 0.95414 0.99940 0.91888 1.60726 1.19130 1.48116 1.00933 1.21733 0.97050 0.90367 0.95693 0.87724 1.21852 0.81271 0.88602 0.82030 1.90593 1.37270 1.79044 1.36476 1.46438 1.48904 1.13920 1.27204 1.21574 0.97633 0.79233 0.99913 1.18519 0.92361 0.95161 0.89910 1.22068 0.99283 0.97244 1.01737 1.22044 0.98271 0.98205 1.01661 1.21769 1.31140 0.95604 1.13901 0.93064 1.25668 0.95227 1.04594 0.92299 1.70853 1.30575 1.22401 1.31965 0.83564 0.76136 0.75077 0.75615 1.21494 1.21509 1.21033 1.21629 0.92141 1.01865 0.98252 0.92519 0.92748 0.92703 0.91560 0.91907 0.91317 0.91158 0.83629 0.76853 0.92746 0.92718 0.90851 0.96606 0.94524 0.94519 0.96554 0.90968 0.90287 0.90192 0.91171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.48 9.21 37.16 0.34 -1.13 16 2 C -0.10 -1.17 2.54 -90.49 -0.23 -1.40 16 3 H 0.07 1.03 7.31 -51.93 -0.38 0.65 16 4 C -0.11 -1.25 5.38 -26.65 -0.14 -1.40 16 5 C 0.03 0.44 6.14 -3.84 -0.02 0.41 16 6 N -0.66 -8.17 6.48 -108.01 -0.70 -8.87 16 7 C 0.07 0.83 3.52 -68.88 -0.24 0.59 16 8 H 0.10 1.16 8.14 -51.93 -0.42 0.73 16 9 C 0.48 7.85 5.68 -10.99 -0.06 7.79 16 10 O -0.55 -10.93 13.83 5.56 0.08 -10.86 16 11 N -0.71 -12.17 4.90 -60.29 -0.30 -12.46 16 12 C 0.14 2.92 4.50 -4.04 -0.02 2.91 16 13 C 0.04 0.94 0.50 -155.66 -0.08 0.86 16 14 C -0.15 -3.19 7.89 37.16 0.29 -2.89 16 15 C -0.14 -3.13 7.88 37.16 0.29 -2.84 16 16 C -0.59 -15.53 8.01 -34.44 -0.28 -15.80 16 17 H 0.05 1.39 7.74 -52.48 -0.41 0.98 16 18 C 0.03 0.70 5.10 -17.82 -0.09 0.61 16 19 N -0.92 -25.63 12.13 55.43 0.67 -24.96 16 20 Si 1.07 24.42 29.90 -169.99 -5.08 19.34 16 21 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 22 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 23 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 24 C -0.10 -1.13 4.78 -26.65 -0.13 -1.26 16 25 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 26 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 27 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 28 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.07 1.13 5.33 -51.93 -0.28 0.85 16 32 H 0.35 4.21 8.81 -39.29 -0.35 3.87 16 33 H 0.40 6.09 5.44 -40.82 -0.22 5.87 16 34 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 35 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 36 H 0.07 1.78 5.21 -51.93 -0.27 1.51 16 37 H 0.01 0.28 7.05 -51.93 -0.37 -0.08 16 38 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.02 0.29 7.05 -51.93 -0.37 -0.07 16 41 H 0.07 1.75 5.23 -51.93 -0.27 1.47 16 42 H 0.28 7.57 3.54 -40.82 -0.14 7.42 16 43 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.07 0.76 7.31 -51.93 -0.38 0.38 16 LS Contribution 327.41 15.07 4.93 4.93 Total: -1.00 -28.92 327.41 -8.06 -36.98 By element: Atomic # 1 Polarization: 16.75 SS G_CDS: -7.30 Total: 9.46 kcal Atomic # 6 Polarization: -13.19 SS G_CDS: -0.36 Total: -13.56 kcal Atomic # 7 Polarization: -45.97 SS G_CDS: -0.32 Total: -46.29 kcal Atomic # 8 Polarization: -10.93 SS G_CDS: 0.08 Total: -10.86 kcal Atomic # 14 Polarization: 24.42 SS G_CDS: -5.08 Total: 19.34 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -28.92 -8.06 -36.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000316022277.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.819 kcal (2) G-P(sol) polarization free energy of solvation -28.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds