Wall clock time and date at job start Mon Mar 30 2020 04:40:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08997 * 109.51949 * 2 1 4 4 C 1.53113 * 109.57376 * 239.83833 * 2 1 3 5 5 C 1.53042 * 109.27773 * 182.40787 * 4 2 1 6 6 N 1.46826 * 109.51153 * 59.18379 * 5 4 2 7 7 C 1.46847 * 111.21279 * 298.24437 * 6 5 4 8 8 H 1.08989 * 109.46402 * 181.76042 * 7 6 5 9 9 C 1.50693 * 109.46337 * 301.74835 * 7 6 5 10 10 O 1.21280 * 120.00319 * 355.78420 * 9 7 6 11 11 N 1.34782 * 120.00172 * 175.79609 * 9 7 6 12 12 C 1.46497 * 120.00192 * 179.97438 * 11 9 7 13 13 C 1.53005 * 109.47012 * 180.02562 * 12 11 9 14 14 C 1.52999 * 109.47110 * 60.00041 * 13 12 11 15 15 C 1.52999 * 109.46815 * 299.99964 * 13 12 11 16 16 C 1.50694 * 109.47235 * 179.97438 * 13 12 11 17 17 H 1.08004 * 120.00248 * 359.44935 * 16 13 12 18 18 C 1.37880 * 120.00449 * 179.44800 * 16 13 12 19 19 N 1.31510 * 119.99388 * 1.57979 * 18 16 13 20 20 Si 1.86799 * 120.00304 * 181.58135 * 18 16 13 21 21 H 1.48504 * 109.47035 * 270.00120 * 20 18 16 22 22 H 1.48501 * 109.47056 * 29.99750 * 20 18 16 23 23 H 1.48498 * 109.47130 * 149.99978 * 20 18 16 24 24 C 1.53039 * 109.50804 * 61.75493 * 7 6 5 25 25 H 1.08995 * 109.46909 * 299.87305 * 1 2 3 26 26 H 1.09003 * 109.46958 * 59.87270 * 1 2 3 27 27 H 1.09001 * 109.47163 * 179.87458 * 1 2 3 28 28 H 1.08993 * 109.51007 * 302.35262 * 4 2 1 29 29 H 1.08999 * 109.50183 * 62.47358 * 4 2 1 30 30 H 1.08997 * 109.46197 * 179.19535 * 5 4 2 31 31 H 1.08997 * 109.46413 * 299.17636 * 5 4 2 32 32 H 1.00910 * 110.97919 * 174.15502 * 6 5 4 33 33 H 0.97007 * 119.99557 * 359.97438 * 11 9 7 34 34 H 1.08995 * 109.47301 * 59.99642 * 12 11 9 35 35 H 1.09005 * 109.46940 * 299.99445 * 12 11 9 36 36 H 1.09004 * 109.47029 * 172.94273 * 14 13 12 37 37 H 1.09006 * 109.47015 * 292.93487 * 14 13 12 38 38 H 1.08989 * 109.47533 * 52.93436 * 14 13 12 39 39 H 1.08994 * 109.47100 * 307.06617 * 15 13 12 40 40 H 1.09001 * 109.47297 * 67.06744 * 15 13 12 41 41 H 1.09002 * 109.46856 * 187.06982 * 15 13 12 42 42 H 0.97002 * 120.00435 * 357.68559 * 19 18 16 43 43 H 1.08995 * 109.50953 * 60.76383 * 24 7 6 44 44 H 1.08998 * 109.50214 * 180.88594 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0430 -0.7248 -1.2473 5 6 3.5722 -0.7736 -1.2104 6 7 4.0113 -1.4766 0.0015 7 6 3.5709 -0.7731 1.2130 8 1 3.9378 -1.3010 2.0931 9 6 4.1179 0.6310 1.2051 10 8 4.8687 0.9844 0.3206 11 7 3.7730 1.4941 2.1811 12 6 4.3052 2.8590 2.1737 13 6 3.7621 3.6247 3.3819 14 6 4.1907 2.9171 4.6689 15 6 2.2345 3.6725 3.3107 16 6 4.3100 5.0285 3.3748 17 1 4.9858 5.3404 2.5922 18 6 3.9487 5.9147 4.3673 19 7 3.1504 5.5257 5.3373 20 14 4.5928 7.6678 4.3340 21 1 5.8743 7.7386 5.0811 22 1 4.8166 8.0863 2.9268 23 1 3.5998 8.5722 4.9675 24 6 2.0417 -0.7244 1.2483 25 1 -0.3633 0.5118 0.8911 26 1 -0.3633 0.5158 -0.8889 27 1 -0.3633 -1.0277 -0.0022 28 1 1.6470 -1.7401 -1.2671 29 1 1.7175 -0.1892 -2.1391 30 1 3.9401 -1.3016 -2.0901 31 1 3.9679 0.2420 -1.2045 32 1 5.0122 -1.6055 0.0019 33 1 3.1723 1.2115 2.8884 34 1 4.0003 3.3629 1.2566 35 1 5.3935 2.8249 2.2250 36 1 3.9128 3.5268 5.5287 37 1 3.6937 1.9491 4.7342 38 1 5.2708 2.7711 4.6609 39 1 1.9281 4.0620 2.3399 40 1 1.8329 2.6677 3.4422 41 1 1.8542 4.3219 4.0992 42 1 2.7890 4.6256 5.3366 43 1 1.6455 -1.7397 1.2678 44 1 1.7152 -0.1885 2.1395 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000316022277.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:40:04 Heat of formation + Delta-G solvation = -69.816757 kcal Electronic energy + Delta-G solvation = -22102.935050 eV Core-core repulsion = 19053.611072 eV Total energy + Delta-G solvation = -3049.323978 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.68917 -39.21799 -38.11755 -35.45495 -34.35326 -32.88254 -31.61703 -28.41628 -27.89100 -27.81198 -26.50418 -24.53854 -23.27509 -21.97335 -20.77490 -20.58913 -18.87957 -17.89111 -17.57645 -16.87593 -16.46524 -15.66965 -15.58034 -15.44835 -15.29649 -14.88213 -14.55515 -14.46768 -14.30531 -13.82147 -13.40100 -13.28217 -13.27122 -13.01900 -12.82560 -12.65879 -12.56008 -12.45261 -12.35495 -11.94984 -11.74257 -11.71136 -11.46865 -11.39842 -11.22422 -11.11323 -10.46987 -10.36968 -10.05943 -9.38436 -8.39962 -6.26551 1.54581 1.58716 1.60836 1.78767 2.28420 2.59737 3.14794 3.23732 3.71213 3.77135 3.86851 3.89963 4.17334 4.23369 4.29746 4.38525 4.45244 4.58394 4.69447 4.71007 4.75969 4.78723 4.80275 4.85508 4.86846 4.94890 5.00176 5.05333 5.13787 5.18173 5.18894 5.22004 5.32289 5.42318 5.50417 5.62181 5.80953 5.87067 6.13926 6.27141 6.30074 6.57196 6.74805 7.23018 7.49275 8.87760 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.029447 B = 0.004731 C = 0.004543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 950.629652 B = 5916.409108 C = 6161.713426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.100 4.100 3 H 0.034 0.966 4 C -0.105 4.105 5 C 0.034 3.966 6 N -0.650 5.650 7 C 0.072 3.928 8 H 0.131 0.869 9 C 0.477 3.523 10 O -0.590 6.590 11 N -0.707 5.707 12 C 0.159 3.841 13 C 0.035 3.965 14 C -0.135 4.135 15 C -0.132 4.132 16 C -0.605 4.605 17 H 0.033 0.967 18 C -0.014 4.014 19 N -0.937 5.937 20 Si 1.105 2.895 21 H -0.278 1.278 22 H -0.282 1.282 23 H -0.283 1.283 24 C -0.098 4.098 25 H 0.054 0.946 26 H 0.053 0.947 27 H 0.072 0.928 28 H 0.082 0.918 29 H 0.064 0.936 30 H 0.081 0.919 31 H 0.034 0.966 32 H 0.346 0.654 33 H 0.408 0.592 34 H 0.031 0.969 35 H 0.034 0.966 36 H 0.049 0.951 37 H 0.051 0.949 38 H 0.028 0.972 39 H 0.027 0.973 40 H 0.051 0.949 41 H 0.048 0.952 42 H 0.280 0.720 43 H 0.102 0.898 44 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.775 -15.151 -7.328 17.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.119 4.119 3 H 0.052 0.948 4 C -0.143 4.143 5 C -0.095 4.095 6 N -0.279 5.279 7 C -0.042 4.042 8 H 0.149 0.851 9 C 0.263 3.737 10 O -0.471 6.471 11 N -0.359 5.359 12 C 0.034 3.966 13 C 0.035 3.965 14 C -0.193 4.193 15 C -0.190 4.190 16 C -0.643 4.643 17 H 0.052 0.948 18 C -0.214 4.214 19 N -0.578 5.578 20 Si 0.929 3.071 21 H -0.204 1.204 22 H -0.207 1.207 23 H -0.208 1.208 24 C -0.136 4.136 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.091 0.909 28 H 0.101 0.899 29 H 0.083 0.917 30 H 0.099 0.901 31 H 0.052 0.948 32 H 0.164 0.836 33 H 0.245 0.755 34 H 0.049 0.951 35 H 0.052 0.948 36 H 0.068 0.932 37 H 0.070 0.930 38 H 0.047 0.953 39 H 0.046 0.954 40 H 0.070 0.930 41 H 0.067 0.933 42 H 0.096 0.904 43 H 0.121 0.879 44 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -4.810 -13.928 -7.131 16.371 hybrid contribution 0.769 -0.167 -0.600 0.990 sum -4.041 -14.095 -7.732 16.576 Atomic orbital electron populations 1.21749 0.93374 1.02733 1.01806 1.21197 0.97089 0.97824 0.95763 0.94767 1.21617 0.94065 1.01399 0.97214 1.22212 0.96516 0.98069 0.92717 1.60802 1.19259 1.47109 1.00699 1.21910 0.98091 0.87412 0.96771 0.85147 1.22732 0.80298 0.89892 0.80758 1.90593 1.38867 1.79980 1.37682 1.46243 1.49187 1.12383 1.28062 1.21043 0.96285 0.81211 0.98022 1.18522 0.93059 0.93873 0.91084 1.21909 0.99101 0.98436 0.99859 1.21877 0.97273 0.99706 1.00193 1.22088 1.31001 0.97861 1.13362 0.94847 1.26718 0.95124 1.07515 0.92027 1.70906 1.31487 1.22773 1.32630 0.83060 0.76091 0.71853 0.76083 1.20425 1.20723 1.20831 1.21684 0.90699 1.03130 0.98077 0.92666 0.92820 0.90882 0.89913 0.91697 0.90074 0.94752 0.83557 0.75523 0.95063 0.94787 0.93194 0.92991 0.95276 0.95398 0.93003 0.93277 0.90398 0.87943 0.90343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.50 9.21 71.98 0.66 -1.84 16 2 C -0.10 -2.20 2.54 -10.71 -0.03 -2.23 16 3 H 0.03 0.99 7.31 -2.39 -0.02 0.98 16 4 C -0.11 -2.20 5.38 30.65 0.16 -2.03 16 5 C 0.03 0.83 6.14 86.33 0.53 1.36 16 6 N -0.65 -14.67 6.48 -495.63 -3.21 -17.88 16 7 C 0.07 1.63 3.52 44.19 0.16 1.79 16 8 H 0.13 2.36 8.14 -2.39 -0.02 2.34 16 9 C 0.48 15.24 5.68 87.65 0.50 15.74 16 10 O -0.59 -23.58 13.83 -3.03 -0.04 -23.62 16 11 N -0.71 -23.37 4.90 -463.06 -2.27 -25.64 16 12 C 0.16 6.77 4.50 86.38 0.39 7.16 16 13 C 0.04 1.62 0.50 -52.93 -0.03 1.59 16 14 C -0.14 -5.81 7.89 71.98 0.57 -5.24 16 15 C -0.13 -5.70 7.88 71.98 0.57 -5.13 16 16 C -0.60 -32.69 8.01 25.60 0.21 -32.49 16 17 H 0.03 1.87 7.74 -2.91 -0.02 1.85 16 18 C -0.01 -0.75 5.10 84.66 0.43 -0.32 16 19 N -0.94 -52.61 12.13 21.45 0.26 -52.35 16 20 Si 1.10 49.54 29.90 68.60 2.05 51.59 16 21 H -0.28 -11.95 7.11 99.48 0.71 -11.25 16 22 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 23 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 24 C -0.10 -1.88 4.78 30.65 0.15 -1.73 16 25 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 26 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 27 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 28 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 29 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 31 H 0.03 1.12 5.33 -2.39 -0.01 1.10 16 32 H 0.35 7.84 8.81 -89.69 -0.79 7.05 16 33 H 0.41 11.50 5.44 -92.70 -0.50 10.99 16 34 H 0.03 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.03 1.57 8.14 -2.38 -0.02 1.55 16 36 H 0.05 2.40 5.21 -2.38 -0.01 2.39 16 37 H 0.05 1.81 7.05 -2.38 -0.02 1.79 16 38 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 39 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 40 H 0.05 1.81 7.05 -2.39 -0.02 1.79 16 41 H 0.05 2.36 5.23 -2.39 -0.01 2.35 16 42 H 0.28 15.18 3.54 -92.71 -0.33 14.85 16 43 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 44 H 0.08 1.39 7.31 -2.39 -0.02 1.38 16 Total: -1.00 -63.66 327.41 1.19 -62.47 By element: Atomic # 1 Polarization: 28.65 SS G_CDS: 0.14 Total: 28.79 kcal Atomic # 6 Polarization: -27.63 SS G_CDS: 4.26 Total: -23.37 kcal Atomic # 7 Polarization: -90.65 SS G_CDS: -5.22 Total: -95.87 kcal Atomic # 8 Polarization: -23.58 SS G_CDS: -0.04 Total: -23.62 kcal Atomic # 14 Polarization: 49.54 SS G_CDS: 2.05 Total: 51.59 kcal Total: -63.66 1.19 -62.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000316022277.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.342 kcal (2) G-P(sol) polarization free energy of solvation -63.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds